Family Search for PF04526 (DUF568)
PF04526 hits 28 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
LOC107801843 cytochrome b561 and DOMON domain-containing protein At5g47530-like from Nicotiana tabacum
Aligns to 85:184 / 404 (24.8%), covers 100.0% of PF04526, 103.8 bits
B9T494 Auxin-induced in root cultures protein 12, putative from Ricinus communis
Aligns to 89:188 / 237 (42.2%), covers 100.0% of PF04526, 103.6 bits
B561O_ARATH / Q9SV71 Cytochrome b561 and DOMON domain-containing protein At4g12980; Protein b561A.tha15 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT4G12980 auxin-responsive protein, putative (RefSeq) from Arabidopsis thaliana
Aligns to 90:195 / 394 (26.9%), covers 100.0% of PF04526, 100.9 bits
- function: May act as a catecholamine-responsive trans-membrane electron transporter.
cofactor: heme b (Binds 2 heme b groups non-covalently.) - Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison
Pilati, BMC genomics 2007 - “...protein (dormancy) 6,41E-44 1613204_at TC38341 2 O49235 2.4-D inducible glutathione S-transferase 1,74E-98 1619913_at TC46727 4 Q9SV71 auxin-responsive protein 5,97E-116 ARF (transcription factor) 1612180_at TC51304 8 Q6L8T9 Auxin response factor 5 1,24E-64 1616225_at TC44210 8 Q9C5W9 Auxin response factor 18 3,69E-88 Auxin receptor 1612090_s_at TC45186 8 Q9ZRA4...”
- Overexpression of a Novel Arabidopsis Gene SUPA Leads to Various Morphological and Abiotic Stress Tolerance Alternations in Arabidopsis and Poplar
Cai, Frontiers in plant science 2020 - “...genes ( ACS1, ACS2, and ACS4 ) and 6 auxin pathway genes ( LBD16, SAUR72, AT4G12980, WAG2, WAG1, SAUR72 ) had significant changes in the overexpression lines, indicating both hormones may be involved in the SUPA -mediated phenotypes. 25 cell wall related genes were identified (...”
- Mining of miRNAs from EST data in Dendrobium nobile
Krishnatreya, Bioinformation 2020 - “...AT2G41600.5 3 Mitochondrial glycoprotein family Cleavage dno-miR390.1 AT4G12980.1 3 cytochrome b561 and DOMON domain-containing protein At4g12980 Cleavage dno-miR390.1 AT5G11700.1 3 ephrin type-B receptor Cleavage dno-miR390.1 AT5G39862.1 3 putative non-LTR retroelement reverse transcriptase Cleavage dno-miR390b AT5G48480.1 3 Lactoylglutathionelyase / glyoxalase I family protein Cleavage dno-miR390b-5p AT3G52890.2 3...”
- Functional Insight of Nitric-Oxide Induced DUF Genes in Arabidopsis thaliana
Nabi, Frontiers in plant science 2020 - “...IPR007789); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF688) (TAIR : AT1G29240.1) AT4G12980 107.85 7.84000 13.75638 0.00000 3.78144 Auxin-responsive family protein; CONTAINS InterPro DOMAIN/s: Uncharacterized conserved protein UCP037471 (InterPro : IPR017214), Cytochrome b561, eukaryote (InterPro : IPR004877), Protein of unknown function DUF568, DOMON-like...”
- OXS2 is Required for Salt Tolerance Mainly through Associating with Salt Inducible Genes, CA1 and Araport11, in Arabidopsis
Jing, Scientific reports 2019 - “...AT3G44006 10.466369 CTTCTTCTC (1386-1394) DEG3 AT4G29200 10.464263 CTTCTTCTC (1143-1151) DEG4 AT4G34790 9.5341629 CTTCCTTTC (892900) DEG18 AT4G12980 6.902787 CTTCTTTTC (16091617) DEG10 AT3G01500 5.0696121 CTCGCTCTC (14271435) CTTCTTCTC (15251533) CTTCTTTTC (19271935) DEG19 AT5G25980 3.6420667 DEG24 AT5G38420 3.619712 CTTCTTCTC (10891097) DEG5 AT3G05945 3.2440316 DEG6 AT3G30720 3.0215489 CTCCTTTTC (19511959) DEG13 AT3G27690...”
- “...response to light stimulus, response to low light intensity stimulus, response to red light DEG18 AT4G12980 1.1046 0.465026703 Auxin-responsive family protein multicellular organism development, oxidation-reduction process DEG19 AT5G25980 1.0972 0.467436341 , glucoside glucohydrolase 2 abscisic acid-activated signaling pathway, carbohydrate metabolic process, defense response to insect, glucosinolate...”
- Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth
Guo, PloS one 2019 - “...[ 52 ]. Our proteomics data suggested that the auxin transport is affected (AT5G35735, AT3G07390, AT4G12980, AT5G35735) in the trm5 mutant. This can be inferred to the reduced auxin levels in attrm5a as reported by Jin et al . (2019) [ 45 ]. Ferric reduction oxidase...”
- Keeping Control: The Role of Senescence and Development in Plant Pathogenesis and Defense
Häffner, Plants (Basel, Switzerland) 2015 - “...(GH3.17) 0.27 at3g47620 (AtTCP14) 0.40 at4g34750 (SAUR_E) 0.31 at3g25290 0.31 at2g04852 0.49 at2g34680 (AIR9) 0.42 at4g12980 0.39 WRKY transcription factors at4g31800 (WRKY18) 2.38 at1g69810 (WRKY36) 2.05 at1g69310 (WRKY57) 1.69 at5g46350 (WRKY8) 3.85 at4g31800 (WRKY18) 2.76 at3g56400 (WRKY70) 2.48 at2g25000 (WRKY60) 4.09 at5g46350 (WRKY8) 4.19 at5g64810 (WRKY51)...”
- Transcriptomic signatures of transfer cells in early developing nematode feeding cells of Arabidopsis focused on auxin and ethylene signaling
Cabrera, Frontiers in plant science 2014 - “...a protein whose sequence is similar to cytokinin oxidase/dehydrogenase AT4G12410 IAA 2.8 Auxin-responsive family protein AT4G12980 IAA 0.7 Auxin-responsive protein AT4G27450 IAA 1.1 Unknown protein AT4G34760 IAA 1.5 Auxin-responsive family protein AT5G20810 IAA 0.4 Auxin-responsive protein AT5G54510 IAA 2.7 DFL1: Encodes an IAA-amido synthase that conjugates...”
- Unraveling the iron deficiency responsive proteome in Arabidopsis shoot by iTRAQ-OFFGEL approach
Zargar, Plant signaling & behavior 2013 - “...0.053 1.116 0.386 AT1G12230 Aldolase superfamily protein 3.3 0.1 0.182 0.009 0.371 0.058 0.811 0.324 AT4G12980 Auxin-responsive family protein 2.3 0.1 0.245 0.070 0.415 0.027 0.777 0.179 AT5G14120 Major facilitator superfamily protein 4.0 0.1 0.247 0.031 0.451 0.070 0.883 0.204 ATCG00490 ribulose-bisphosphate carboxylases 20.7 0.5 0.283...”
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B561H_ARATH / Q9LYS9 Cytochrome b561 and DOMON domain-containing protein At3g59070; Protein b561A.tha8 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 98:198 / 466 (21.7%), covers 100.0% of PF04526, 100.4 bits
- function: May act as a catecholamine-responsive trans-membrane electron transporter.
cofactor: heme b (Binds 2 heme b groups non-covalently.)
LOC102592722 cytochrome b561 and DOMON domain-containing protein At3g25290-like from Solanum tuberosum
Aligns to 90:189 / 392 (25.5%), covers 100.0% of PF04526, 96.0 bits
- Overexpression of a modified eIF4E regulates potato virus Y resistance at the transcriptional level in potato
Gutierrez, BMC genomics 2020 - “...activity 102,604,056 XP_006367342.1 cytochrome_P450_83B1-like (LOC102604056) A Up GO:0055114 F oxidative -reduction process 102,592,722 XP_006358835.1 cytochrome_b561_and_DOMON_domain-containing_protein_At3g25290-like (LOC102592722) AB Up/Up GO:0016709 F oxidoreductase activity 102,598,017 XP_006362126.1 cytochrome_P450_78A6-like (LOC102598017) A Down GO:00055114 F oxidative -reduction process 102,579,798 XP_006358956.1 homogentisate_12-dioxygenase (LOC102579798) A Up GO:0016705 F oxidoreductase activity 102,603,519 XP_006350395.1 premnaspirodiene_oxygenase-like...”
B561C_ARATH / Q9LSE7 Cytochrome b561 and DOMON domain-containing protein At3g25290; Protein b561A.tha3 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT3G25290 auxin-responsive family protein (RefSeq) from Arabidopsis thaliana
Aligns to 89:195 / 393 (27.2%), covers 100.0% of PF04526, 94.5 bits
- function: May act as a catecholamine-responsive trans-membrane electron transporter.
cofactor: heme b (Binds 2 heme b groups non-covalently.) - Noncoding RNAs responsive to nitric oxide and their protein-coding gene targets shed light on root hair formation in Arabidopsis thaliana
Santos, Frontiers in genetics 2022 - “...stress ( Biniaz et al., 2022 ). This miRNA precursor directly upregulates the expression of AT3G25290, a member of auxin-responsive gene family, by targeting its promoter. This activation may be involved in the development and growth of A. thaliana ( Yang et al., 2019 ). In...”
- “...seems to be an important regulator that represses the expression of numerous PCGs, but not AT3G25290 ( Supplementary Table S5 ). This precursor is also known for controlling the expression of transcription factors, as those related to growth and development in A. thaliana , such as...”
- Genetic Determinants of Fiber-Associated Traits in Flax Identified by Omics Data Integration
Kanapin, International journal of molecular sciences 2022 - “...(GhGDSL) li pase/hydrolase gene (CotAD_74480) is expressed during SCW biosynthesis Chr11:11843614 Lus10021553 auxin-responsive family protein AT3G25290 [ 101 ] TF, bind to AuxRE in the promoters of auxin-regulated genes Chr12:16474392 Lus10027867 reticulon family protein AT3G19460 [ 102 ] endoplasmic reticulum-Golgi trafficking, vesicle formation and membrane morphogenesis...”
- Transcriptome and Gene Regulatory Network Analyses Reveal New Transcription Factors in Mature Fruit Associated with Harvest Date in Prunus persica
Núñez-Lillo, Plants (Basel, Switzerland) 2022 - “...RALFL24 Ralf-like 24 533 475 360 Prupe.4G150200 AT1G78440 GA2ox1 Gibberellin 2--dioxygenase 917 862 391 Prupe.8G192500 AT3G25290 AUX Auxin-responsive family protein 161 165 412 Prupe.7G247500 AT4G28640 IAA11 Indole-3-acetic acid inducible 11 563 1409 1906 Prupe.5G233100 AT1G73590 PIN1 Auxin efflux carrier family protein 1553 2326 2743 Prupe.4G231800 AT5G55540...”
- Stigmatic Transcriptome Analysis of Self-Incompatible and Compatible Pollination in Corylus heterophylla Fisch. × Corylus avellana L
Hou, Frontiers in plant science 2022 - “...3), EVM0000979 (mitochondrial uncoupling protein 5), EVM0000443 (Expansin-B3), EVM0002638 (Cytochrome b561 and DOMON domain-containing protein At3g25290), EVM0008735 (stress-induced protein KIN2-like), EVM0005669 (sphinganine C4-monooxygenase 1 homologous gene), and EVM0000081 (pectate lyase homologous gene). These qPCR results indicated a strong consistency with those from the RNA-Seq analysis (...”
- Transcriptome analysis of Arabidopsis reveals freezing-tolerance related genes induced by root endophytic fungus Piriformospora indica
Jiang, Physiology and molecular biology of plants : an international journal of functional plant biology 2021 - “...actions (e.g. ERF5, ARR15, EIL1, ABI1, ABF4, CYP85A1, SAUR78, AT3G25290) (Fig. 7). Seventeen genes were upregulated by P. indica, 5 were downregulated and 3 did...”
- “...SAUR (AT1G72430) and the auxinresponsive protein AT3G25290, the brassinosteroid-6-oxidase (AT5G38970), the cytokinin-responsive GATA factor AT4G26150, as well...”
- Identification and the potential involvement of miRNAs in the regulation of artemisinin biosynthesis in A. annua
Khan, Scientific reports 2020 - “...promoters of genes, activate their expression at the transcriptional level. For instance, miR5658 directly activates AT3G25290 expression by targeting its promoter in Arabidopsis thaliana . 51 . Similarly, Place et al. 52 reported that miR-373 induces the expression of two genes, cold-shock domain-containing protein C2 (CSDC2)...”
- MicroRNAs transcriptionally regulate promoter activity in Arabidopsis thaliana
Yang, Journal of integrative plant biology 2019 (PubMed)- “...thaliana. For example, miR5658 was predominantly present in the nucleus and activated the expression of AT3G25290 directly by binding to its promoter. Our observations suggest that this mode of action may be a general feature of plant miRNAs, and thus provide insight into the vital roles...”
- Overexpression of a tomato miR171 target gene SlGRAS24 impacts multiple agronomical traits via regulating gibberellin and auxin homeostasis
Huang, Plant biotechnology journal 2017 - “...Solyc05g025920.2 AT5G20810 SAURlike auxinresponsive protein 1.55 1.59 Solyc06g063060.2 AT1G54070 Auxinrepressed proteinlike protein 1.58 1.28 Solyc09g056360.2* AT3G25290 Auxinresponsive family protein 1.05 1.21 Solyc10g011660.2 AT2G46370 Auxinresponsive GH3 family protein 1.29 1.18 Solyc12g009280.1* AT5G20810 SAURlike auxinresponsive protein 1.22 1.37 Solyc10g009640.1* AT2G46370 Jasmonic acidamido synthetase JAR1 1.52 1.33 Solyc03g044740.2 AT3G50440...”
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C5X4M5 DOMON domain-containing protein from Sorghum bicolor
Aligns to 98:200 / 265 (38.9%), covers 100.0% of PF04526, 93.3 bits
AIR12_ARATH / Q94BT2 Auxin-induced in root cultures protein 12 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
Aligns to 91:191 / 252 (40.1%), covers 100.0% of PF04526, 90.8 bits
- function: One-heme-containing cytochrome.
cofactor: heme (Binds 1 heme group non-covalently.) - Integrated Transcriptional and Proteomic Profiling Reveals Potential Amino Acid Transporters Targeted by Nitrogen Limitation Adaptation.
Liao, International journal of molecular sciences 2020 - “...0.00 AT5G07440 O82179 Glycine cleavage system H protein 2, mitochondrial 0.60 0.00 11.46 0.00 AT3G07390 Q94BT2 Auxin-induced in root cultures protein 12 0.59 0.00 5.75 0.00 At4g33500 Q93V88 Probable protein phosphatase 2C 62 0.59 0.01 0.39 0.00 AT2G23670 O64835 At2g23670/F26B6.32 0.57 0.02 0.31 0.00 AT2G26540 A0A1P8AZL4...”
- Profiling of advanced glycation end products uncovers abiotic stress-specific target proteins in Arabidopsis
Chaplin, Journal of experimental botany 2019 - “...(20% rSWC) THM1 O48737 AT1G03680 2.31 PDX11 O80448 AT2G38230 1.36 PsbB P56777 ATCG00680 2.30 AIR12 Q94BT2 AT3G07390 1.69 CSY4 P20115-2 AT2G44350 1.13 DHAR3 Q8LE52 AT5G16710 2.00 EMB1144 P57720 AT1G48850 1.67 FDH1 Q9S7E4 AT5G14780 2.18 FQR1 Q9LSQ5 AT5G54500 1.78 GRF10 P48347 AT1G22300 2.07 At14a P0DI79 AT3G28300 1.54...”
- Transcriptome Analysis of Calcium- and Hormone-Related Gene Expressions during Different Stages of Peanut Pod Development
Li, Frontiers in plant science 2017 - “...8.00 e - 91 comp35718 Q8H174 Auxin-responsive protein IAA31 Arabidopsis 3.00 e - 31 comp50484 Q94BT2 Auxin-induced in root cultures protein 12 Arabidopsis 3.00 e - 6 comp46184 Q94BT2 Auxin-induced in root cultures protein 12 Arabidopsis 8.00 e - 15 comp44924 Q94BT2 Auxin-induced in root cultures...”
- Auxin involvement in tepal senescence and abscission in Lilium: a tale of two lilies
Lombardi, Journal of experimental botany 2015 - “...protein 3 Medicago truncatula 3E83 6782 Q5SMQ9 Auxin efflux carrier component Oryza sativa 9E12 4681 Q94BT2 Auxin-induced in root cultures Arabidopsis thaliana 2E28 5083 Q6J163 Auxin-induced protein 5NG4 Pinus taeda 2E23 10928 Q6J163 Auxin-induced protein 5NG4 Pinus taeda 5E10 32 Q6J163 Auxin-induced protein 5NG4 Pinus taeda...”
- Genomic approach to study floral development genes in Rosa sp
Dubois, PloS one 2011 - “...1,30 0,49 2,62 0,80 CF349291 (Q9SGU9) Similar to O-succinylhomoserine sulfhydrylase 1,26 0,89 0,96 0,01 EC586448 (Q94BT2) Auxin-induced in root cultures protein 12 precursor 1,26 0,57 0,77 0,72 activators BI978967 (Q6Z2K3) Putative Avr9/Cf-9 rapidly elicited 1,06 0,27 0,75 0,04 BI977621 (Q8L5J6) Expansin 3 (Q8L5J6_MALDO) 1,08 0,50 1,01...”
NP_566306 auxin-induced in root cultures-like protein from Arabidopsis thaliana
AT3G07390 AIR12; extracellular matrix structural constituent (RefSeq) from Arabidopsis thaliana
Aligns to 112:212 / 273 (37.0%), covers 100.0% of PF04526, 90.6 bits
- AIR12, a b-type cytochrome of the plasma membrane of Arabidopsis thaliana is a negative regulator of resistance against Botrytis cinerea.
Costa, Plant science : an international journal of experimental plant biology 2015 (PubMed)- GeneRIF: Recombinant Auxin Induced in Root culture (AIR12)-knock out plants displayed a strongly decreased susceptibility to Botrytis cinerea infection, which in turn induced AIR12 expression in susceptible wild type plants.
- Respiratory Burst Oxidase Homolog D as a Modulating Component of Oxidative Response under Ammonium Toxicity
Burian, Antioxidants (Basel, Switzerland) 2022 - “...used to measure the transcript abundance of auxin-induced in root cultures 12 ( AIR12 , AT3G07390), feronia ( FER , AT3G51550), GR1 (AT3G24170), GR2 (AT3G54660), mitogen-activated protein kinase 3 ( MPK3 , AT3G45640), oxidation-related zinc finger 1 ( OZF1 , AT2G19810), POX33 (AT3G49110), POX34 (AT3G49120), and...”
- Transcriptome Dynamics of Epidermal Reprogramming during Direct Shoot Regeneration in Torenia fournieri
Morinaka, Plant & cell physiology 2021 - “...Significance AT4G36670 POLYOL/MONOSACCHARIDE TRANSPORTER 6 (PMT6) TfB096621 + AT4G36670 POLYOL/MONOSACCHARIDE TRANSPORTER 6 (PMT6) TfB101385 + AT3G07390 AUXIN-INDUCED IN ROOT CULTURES 12 (AIR12) TfA043399 + AT1G21750 PDI-LIKE 1-1 (PDIL1-1) TfA023511 + AT2G15760 TfB102428 + AT1G09970 LRR XI-23 TfB077885 + AT1G09970 LRR XI-23 TfA029790 + AT3G44750 HISTONE DEACETYLASE...”
- “...TfA011629 + AT3G54960 PDI-LIKE 1-3 (PDIL1-3) TfB087184 + AT4G36670 POLYOL/MONOSACCHARIDE TRANSPORTER 6 (PMT6) TfB089190 ns AT3G07390 AUXIN-INDUCED IN ROOT CULTURES 12 (AIR12) TfB097832 + AT3G44750 HISTONE DEACETYLASE 3 (HDA3) TfA014513 + AT4G36670 POLYOL/MONOSACCHARIDE TRANSPORTER 6 (PMT6) TfB077745 ns AT3G44750 HISTONE DEACETYLASE 3 (HDA3) TfB086922 ns Genes...”
- Genome-Wide Association Study of Natural Variation in Arabidopsis Exposed to Acid Mine Drainage Toxicity and Validation of Associated Genes with Reverse Genetics.
Ghimire, Plants (Basel, Switzerland) 2021 - “...lateral root formation [ 78 ]. Also, auxin-induced in root cultures 12 ( AIR12 , At3g07390 ) is early expressed during auxin-induced lateral root formation in Arabidopsis [ 79 ]. GWAS also identified brassinosteroid (BR)-associated genes involved in AMD tolerance. BR enhanced expression 3 (BEE 3...”
- Comparative Label-Free Quantitative Proteomics Analysis Reveals the Essential Roles of N-Glycans in Salt Tolerance by Modulating Protein Abundance in Arabidopsis
Liu, Frontiers in plant science 2021 - “...function mutations lacks ER bodies. - 0.54 0.03 4.15 0.27 Auxin biosynthesis and signaling (3) AT3G07390 Auxin-responsive family protein, AIR12 - - 6.00 0.39 AT4G24670 TAR2, auxin biosynthetic process - 2.77 0.28 - AT4G02980 Auxin binding protein 1, ABP1 - 2.87 0.72 - Indicates glycoprotein abundance...”
- The critical function of the plastid rRNA methyltransferase, CMAL, in ribosome biogenesis and plant development
Zou, Nucleic acids research 2020 - “...1.70 AT5G20820 SAUR76 3.97E-06 1.92 Auxin metabolism genes AT5G17300 RVE1 ( REVEILLE1 ) 1.31E-06 1.08 AT3G07390 AIR12 ( AUXIN-INDUCED IN ROOT CULTURES 12 ) 2.61E-24 1.27 AT4G31500 SUR2 ( SUPERROOT 2 ) 1.59E-57 1.14 AT1G44350 ILL6 [ IAA-LEUCINE RESISTANT (ILR)-LIKE GENE 6 ] 9.57E-65 2.49 AT1G51760...”
- Integrated Transcriptional and Proteomic Profiling Reveals Potential Amino Acid Transporters Targeted by Nitrogen Limitation Adaptation.
Liao, International journal of molecular sciences 2020 - “...0.20 0.00 AT5G07440 O82179 Glycine cleavage system H protein 2, mitochondrial 0.60 0.00 11.46 0.00 AT3G07390 Q94BT2 Auxin-induced in root cultures protein 12 0.59 0.00 5.75 0.00 At4g33500 Q93V88 Probable protein phosphatase 2C 62 0.59 0.01 0.39 0.00 AT2G23670 O64835 At2g23670/F26B6.32 0.57 0.02 0.31 0.00 AT2G26540...”
- Genetic Analysis of the Transition from Wild to Domesticated Cotton (Gossypium hirsutum L.)
Grover, G3 (Bethesda, Md.) 2020 - “...protein-like 2 FB2 PHTN,TN,TNFB TNFF SW Gohir.A11G234300 AT5G19770 TUA3 tubulin alpha-3 AA,DGE,SWEEP FB2 TrS Gohir.D07G166500 AT3G07390 AIR12 auxin-responsive family protein PH PHTN Gohir.D07G165000 AT4G31940 CYP82C4 cytochrome P450, family 82, subfamily C, polypeptide 4 AA,SNP PH PHTN Gohir.D07G167500 AT3G07500 Far-red impaired responsive (FAR1) family protein PH PHTN...”
- Glycosylphosphatidylinositol-Anchored Proteins in Arabidopsis and One of Their Common Roles in Signaling Transduction
Zhou, Frontiers in plant science 2019 - “...Borner et al. (2003 ). Other 6 At5g07190 SEED GENE 3 At5g62200 ATS3B At5g62210 ATS3 At3g07390 At1g24520 BCP1 Active in both diploid tapetum and haploid microspores and required for pollen fertility ( Theerakulpisut et al., 1991 ; Xu et al., 1995 ; Luo et al., 2000...”
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B561J_ARATH / Q9FGK4 Cytochrome b561 and DOMON domain-containing protein At5g47530; Protein b561A.tha10 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT5G47530 Auxin-responsive family protein from Arabidopsis thaliana
Aligns to 88:187 / 395 (25.3%), covers 100.0% of PF04526, 90.0 bits
B561Q_ARATH / Q9FKC1 Cytochrome b561 and DOMON domain-containing protein At5g48750; Protein b561A.tha17 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 95:195 / 255 (39.6%), covers 100.0% of PF04526, 89.3 bits
B561P_ARATH / Q9FKH6 Cytochrome b561 and DOMON domain-containing protein At5g35735; Protein b561A.tha16 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT5G35735 auxin-responsive family protein (RefSeq) from Arabidopsis thaliana
Aligns to 90:189 / 404 (24.8%), covers 100.0% of PF04526, 87.5 bits
- function: May act as a catecholamine-responsive trans-membrane electron transporter.
cofactor: heme b (Binds 2 heme b groups non-covalently.) - Genome-Wide Analysis of SAUR Gene Family Identifies a Candidate Associated with Fruit Size in Loquat (Eriobotrya japonica Lindl.)
Peng, International journal of molecular sciences 2022 - “...the STRING database ( Figure 11 ). Among the top interacting proteins with AT4G34810 were AT5G35735, an auxin-responsive family protein that may act as a catecholamine-responsive trans-membrane electron transporter, and AT4G02330, which may act in the modification of cell walls via demethylesterification of cell wall pectin....”
- Ethylene Response Factor109 Attunes Immunity, Photosynthesis, and Iron Homeostasis in Arabidopsis Leaves
Yang, Frontiers in plant science 2022 - “...et al., 2017a , b ). DEGs in the erf109 transcriptome related to hormones are At5g35735 (auxin), ERF13 , and ERF13/109 (ethylene), JAZ2/5 , LOX2/3/4 , and AOC3 (jasmonic acid; JA) ( Supplementary Tables 1 , 2 ). Both ERF13 and ERF109 are under the regulation...”
- Transcriptomes of Saussurea (Asteraceae) Provide Insights into High-Altitude Adaptation.
Zhang, Plants (Basel, Switzerland) 2021 - “...of A. thaliana that are important for species adaptation. For example, RAD54, RUP2, TT5, and AT5G35735 are involved in DNA repair, response to UV-B, flavonoid biosynthesis, and cellular response to hypoxia. 3. Discussion Despite de novo assembly due to the lack of whole-genome sequence, transcriptomes of...”
- Mild drought in the vegetative stage induces phenotypic, gene expression, and DNA methylation plasticity in Arabidopsis but no transgenerational effects
Van, Journal of experimental botany 2020 - “...did not correspond to annotated TE sequences. One DMR mapped to the promoter region of AT5G35735 , which encodes an auxin responsive protein of unknown function. The other DMR was located within the first intron of AT3G10340 , which encodes a putative phenylalanine ammonia-lyase that may...”
- “...regulatory sequences ( Morello and Breviario, 2008 ). Moreover, hypermethylation of the promoter DMR of AT5G35735 and hypomethylation of the intronic DMR of AT3G10340 in response to mild drought were associated with down- and up-regulation, respectively ( Supplementary Fig. S3b ). Taken together, these findings suggested...”
- Overexpression of rice jacalin-related mannose-binding lectin (OsJAC1) enhances resistance to ionizing radiation in Arabidopsis
Jung, BMC plant biology 2019 - “...Disease resistance protein (TIR-NBS-LRR class) family AT4G34150 1.23 1.20 Calcium-dependent lipid-binding (CaLB domain) family protein AT5G35735 1.22 1.46 Auxin-responsive family protein AT1G61890 1.19 1.50 MATE efflux family protein AT2G38470 1.06 1.10 WRKY DNA-binding protein 33 AT5G45110 1.06 1.22 NPR1-like protein 3 AT4G29780 1.05 1.93 Unknown AT4G33920...”
- Arabidopsis TRM5 encodes a nuclear-localised bifunctional tRNA guanine and inosine-N1-methyltransferase that is important for growth
Guo, PloS one 2019 - “...plant growth [ 52 ]. Our proteomics data suggested that the auxin transport is affected (AT5G35735, AT3G07390, AT4G12980, AT5G35735) in the trm5 mutant. This can be inferred to the reduced auxin levels in attrm5a as reported by Jin et al . (2019) [ 45 ]. Ferric...”
- Ca2+/Calmodulin-Dependent AtSR1/CAMTA3 Plays Critical Roles in Balancing Plant Growth and Immunity.
Yuan, International journal of molecular sciences 2018 - “...In addition, four auxin-related genes in the auxin-mediated pathway were induced in atsr1 , including At5g35735 (auxin-responsive family protein but function is unknown), INDOLE-3-ACETIC ACID INDUCIBLE 19 (IAA19) and two Small Auxin Upregulated (SAUR) genes, SAUR41 and SAUR9 ; while IAA1 is repressed in atsr1 ....”
- “...triggered by pathogen in atsr1 is also similar to that in WT. Only three genes (At5g35735, BRL3, and DFW4) displayed differential expression in these comparisons. However, in Sr1_T vs. Sr1_U against WT_T vs. WT_U ( Figure 5 , lane 5), most of the growth-related genes displayed...”
- Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development
Castro, Journal of experimental botany 2018 - “...P -value Description Hormone metabolism Auxin At1g77690 LAX3 0.65 2.41 10 4 Auxin influx carrier At5g35735 0.58 9.44 10 3 Auxin-responsive At1g56150 0.59 6.19 10 3 SAUR-like auxin-responsive At4g14560 AXR5, IAA1 0.88 2.49 10 10 Aux/IAA protein At5g18060 SAUR23 0.96 <0.01 10 11 SAUR-like auxin-responsive Brassinosteroid...”
- More
C5YI64 DOMON domain-containing protein from Sorghum bicolor
Aligns to 86:189 / 258 (40.3%), covers 99.0% of PF04526, 85.8 bits
GRMZM2G427451 AIR12 precursor from Zea mays
Aligns to 88:189 / 258 (39.5%), covers 99.0% of PF04526, 84.8 bits
- Comparative Transcriptome Analysis of Iron and Zinc Deficiency in Maize (Zea mays L.).
Mallikarjuna, Plants (Basel, Switzerland) 2020 - “...Fe (3.48) and FeZn (5.35) in the root. The repression or non-significant expression of AIR12 (GRMZM2G427451) was observed in the root under Fe and FeZn stresses. Ethylene is another important class of hormones mediating plants adaptation under Fe and Zn deficiencies. The Fe and FeZn stresses...”
- “...GRMZM2G074267 Zm.7858.1.A1_at 1.25 3.48 5.35 1.26 1.50 3.40 Auxin efflux carrier component PIN1bA: J 2 GRMZM2G427451 Zm.16735.1.A1_at 1.57 1.96 99.75 1.30 4.24 112.22 Auxin induced in root cultures 12 3 GRMZM2G035465 Zm.2321.2.A1_a_at 2.08 1.32 9.13 3.87 1.03 1.35 Auxin-responsive protein 4 GRMZM2G077356 Zm.4896.1.A1_at 1.30 2.17 9.12...”
GRMZM2G050159 uncharacterized protein LOC100281813 precursor from Zea mays
Aligns to 86:187 / 386 (26.4%), covers 100.0% of PF04526, 84.2 bits
B651B_ARATH / Q8VYH6 Cytochrome b561 and DOMON domain-containing protein At4g17280; Protein b561A.tha2 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT4G17280 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 95:196 / 402 (25.4%), covers 100.0% of PF04526, 83.9 bits
- function: May act as a catecholamine-responsive trans-membrane electron transporter.
cofactor: heme b (Binds 2 heme b groups non-covalently.) - GDSL-domain proteins have key roles in suberin polymerization and degradation
Ursache, Nature plants 2021 - “...PLIP3 , AT3G62590; CASPL4B1 , AT2G38480; CASPL1A1 , AT1G14160; Cytochrome b561 and DOMON domain-containing protein At4g17280; Cytochrome b561 and DOMON domain-containing protein At5g47530. 1 Castrillo G Root microbiota drive direct integration of phosphate stress and immunity Nature 2017 543 513 518 10.1038/nature21417 28297714 2 Duran P...”
- Keeping Control: The Role of Senescence and Development in Plant Pathogenesis and Defense
Häffner, Plants (Basel, Switzerland) 2015 - “...at1g77690 (LAX3) 0.37 at3g10870 (MES17) 0.49 at3g12955 0.34 at5g47530 0.29 at1g05560 (UGT1) 0.45 at3g02250 0.45 at4g17280 0.17 at1g77690 (LAX3) 0.42 at4g00880 0.30 at1g16510 0.48 at5g16530 (PIN5) 0.42 at1g19830 0.26 at2g14960 0.24 at1g73590 (PIN1) 0.47 at3g61900 0.45 at3g02250 0.46 at5g47530 0.21 at1g14970 0.31 at4g00880 0.46 at4g17280 0.21...”
- Quantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells
Böhmer, The Plant journal : for cell and molecular biology 2011 - “...DESSICATION 20 (RD20) At5g09520 186.8 0.0 7.5 0.0 0.9 0.9 sec hydroxyproline-rich glycoprotein family protein At4g17280 176.2 0.0 9.7 0.0 1.0 1.0 sec unknown protein At5g59220 169.7 0.0 46.3 0.0 1.1 0.7 chl HIGHLY ABA-INDUCED PP2C GENE 1 (HAI1) At5g66400 148.0 0.0 47.9 0.0 1.0 0.9...”
- The ASH1 HOMOLOG 2 (ASHH2) histone H3 methyltransferase is required for ovule and anther development in Arabidopsis
Grini, PloS one 2009 - “...pollen 1.29 2.45 At4g14080 MEE48 Pagnussat et al., Development 132: 603614 (2004) flower 1.69 3.22 At4g17280 similar to AIR12 seeds 0.88 1.84 At4g19230 CYP707A1 Okamoto et al., Plant Physiol 141: 97107 (2006) stamens 0.77 1.71 At4g20050 QRT3 Rhee et al., Plant Physiol 133: 11701180 (2003) stamens...”
- Genome-wide analysis of the auxin-responsive transcriptome downstream of iaa1 and its expression analysis reveal the diversity and complexity of auxin-regulated gene expression
Lee, Journal of experimental botany 2009 - “...g Auxin-regulated At4g31320 253515_at Small auxin up RNA (SAUR_C) 0.28 0.034 1.18 0.012 1 0 At4g17280 245412_at Auxin-responsive protein 0.45 0.013 0.73 0.036 0 1 Boitic and abiotic At5g45210 248990_at Disease resistance protein 0.28 5.46E-04 0.52 0.157 0 1 At4g39030 252921_at Salicylic acid induction deficient 1...”
C5HU39 AIR12 from Glycine max
NP_001237825 plasma membrane ascorbate-reducible b-type cytochrome family protein precursor from Glycine max
Aligns to 91:190 / 244 (41.0%), covers 97.0% of PF04526, 83.5 bits
B6UBU0 AIR12 from Zea mays
Aligns to 99:203 / 274 (38.3%), covers 100.0% of PF04526, 82.8 bits
Q9AR57 Cytochrome b561 and DOMON domain-containing protein from Solanum tuberosum
Aligns to 90:188 / 400 (24.8%), covers 100.0% of PF04526, 82.4 bits
- Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development.
Deluc, BMC genomics 2007 - “...2.88 1611582_s_at CB970190 TC70959 Q02060 22 kDa protein Photosystem II 3 2.69 1607926_at CF202256 CF202256 Q9AR57 Putative membrane protein Photosystem II 2 2.56 1621978_at CB837910 TC56626 Q9M3M7 Uncharacterized protein Photosystem II 16 2.31 1607803_at CB975690 TC52112 Q06364 26S proteasome non-ATPase regulatory subunit 3 Photosystem II 21...”
F2CZ96 Cytochrome b561 and DOMON domain-containing protein from Hordeum vulgare subsp. vulgare
Aligns to 88:186 / 384 (25.8%), covers 100.0% of PF04526, 81.7 bits
- Identification of the Genetic Basis of Response to De-Acclimation in Winter Barley.
Wójcik-Jagła, International journal of molecular sciences 2021 - “...Tauschii ] HORVU4HR1G052490 A0A287P258 N/A Unknown function protein R2R3-MYB protein [ Triticum aestivum ] HORVU4HR1G071360 F2CZ96 N/A Cytochrome b561 and DOMON domain-containing protein cytochrome b561 and DOMON domain-containing protein At4g12980-like [ Aegilops tauschii subsp. tauschii ] HORVU4HR1G072880 A0A287PM62 N/A Phosphoserine aminotransferase phosphoserine aminotransferase 1, chloroplastic [...”
B6SN55 AIR12 from Zea mays
Aligns to 88:189 / 258 (39.5%), covers 98.0% of PF04526, 81.1 bits
GRMZM2G003506 uncharacterized protein LOC100285512 precursor from Zea mays
Aligns to 84:185 / 385 (26.5%), covers 100.0% of PF04526, 79.4 bits
- Chilling Tolerance in Maize: Insights into Advances-Toward Physio-Biochemical Responses' and QTL/Genes' Identification
Ma, Plants (Basel, Switzerland) 2022 - “...chlorophyll concentration, leaf color, tissue damage linkage analysis and RNA-seq 2 QTLs 27 candidate genes: GRMZM2G003506, GRMZM2G331652, GRMZM2G331638, GRMZM2G155242, GRMZM2G107774, GRMZM2G103079, GRMZM2G395121, GRMZM2G094444, GRMZM2G098714, GRMZM2G173067, GRMZM2G163043, GRMZM2G095382, GRMZM2G014560, GRMZM2G096753, GRMZM2G170692, GRMZM2G153488, GRMZM2G153359, GRMZM2G153263, GRMZM2G098474, GRMZM2G165290, GRMZM2G175177, GRMZM2G159904, GRMZM5G841914, GRMZM2G178603, GRMZM2G178509, GRMZM2G178497 and GRMZM2G139837 [ 64 ]...”
XP_003534866 cytochrome b561 and DOMON domain-containing protein At5g47530 from Glycine max
Aligns to 95:193 / 404 (24.5%), covers 100.0% of PF04526, 78.7 bits
B6U5U8 Cytochrome b561 and DOMON domain-containing protein from Zea mays
Aligns to 84:185 / 387 (26.4%), covers 100.0% of PF04526, 77.1 bits
B561G_ARATH / Q9SJ74 Cytochrome b561 and DOMON domain-containing protein At2g04850; Protein b561A.tha7 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G04850 auxin-responsive protein-related (RefSeq) from Arabidopsis thaliana
Aligns to 85:199 / 404 (28.5%), covers 99.0% of PF04526, 73.4 bits
- function: May act as a catecholamine-responsive trans-membrane electron transporter.
cofactor: heme b (Binds 2 heme b groups non-covalently.) - New insights on the expression patterns of specific Arabinogalactan proteins in reproductive tissues of Arabidopsis thaliana
Moreira, Frontiers in plant science 2022 - “..., AGP25 (AT5G18690), leucine-rich repeat (LRR) family proteins (AT1G49750), and an Auxin Responsive Factor (ARF; AT2G04850) ( Supplemental Table7 ). Differential expression patterns of AGPs in Arabidopsis reproductive tissues The expression patterns of the AGPs selected for this study were analysed at distinct stages (stages 11,...”
- “...one belonging to the LRR family (AT1G49750) and the other to the auxin-responsive gene family (AT2G04850). The LRR family is an important family of proteins in the reproductive process. LRR kinase-like receptors (LRR-RLKs) such as MALE DISCOVERER 1 (MDIS1), MDIS1-INTERACTING RECEPTOR LIKE KINASE (MIK1, MIK2) (...”
- Expression and Role of Biosynthetic, Transporter, Receptor, and Responsive Genes for Auxin Signaling during Clubroot Disease Development
Robin, International journal of molecular sciences 2020 - “...TGATCTCCGGTCTAGTTCTT At4g27450 BrARG10-like Bra026348 753 CTCTGACAACACTTTCTCCA 175 GGTCAGACCATATTGCTTG At3g16500 BrIAA3 Bra001634 819 GAGGTCAAGTCAACAAGAGT 171 CTCTGAAGAGTTGGTCTACG At2g04850 BrARP1 Bra013191 1212 GAATGTGTTCCAAGGGTTTG 189 CTGCTGCATCTATCATCAGT At2g46690 BrSAUR3 Bra039264 360 GCTCTGAAAGGCTTCCATTTAC 222 AACGTCGCATGGAATTGTGATG At5g25890 BrIAA4 Bra009867 531 TTCGTCGGATCTAAACAGAC 167 CCTTGCAGTTCTTTCTAGGT At1g04240 BrIAA5 Bra032521 543 ATCCCCTCCTAGAAAGACTC 152 TTTTCCTCAAGTATGGTGCA At3g60690 BrSAUR4 Bra014476...”
- Species-Wide Variation in Shoot Nitrate Concentration, and Genetic Loci Controlling Nitrate, Phosphorus and Potassium Accumulation in Brassica napus L
Alcock, Frontiers in plant science 2018 - “...3; also required for tip growth of root hairs A1 GEM_Cab024257.1 Leaf K concentration Cab001225.1 AT2G04850 2 10 200 Au in-responsive family protein A3 GEM_Cab001225.1 Leaf K concentration Cab002494.2 AT2G30320 3 10 207 Pseudouridine synthase family protein A3 GEM_Cab002494.2 Leaf K concentration Cab037725.3 AT1G05940 9 10...”
- “...threshold. The GEM most highly associated with leaf K concentration is orthologous to A. thaliana At2g04850. Whilst relatively little is known about this gene, data from the SMART web-based tool (Schultz et al., 1998 ) indicates that it is membrane bound, and that it contains a...”
- Keeping Control: The Role of Senescence and Development in Plant Pathogenesis and Defense
Häffner, Plants (Basel, Switzerland) 2015 - “...at1g17345 2.57 at5g54510 GH3.6 2.78 at2g23170 (GH3.3) 15.67 at4g37390 (YDK1/GH3.2) 5.77 at1g17345 2.48 at1g10810 3.26 at2g04850 2.06 at2g04850 2.69 at5g13320 (PBS3) 6.08 at4g12410 2.09 at4g12410 3.37 at1g60730 2.48 at5g13370 4.57 at5g01100 2.93 at4g27450 3.94 at1g77690 (LAX3) 0.37 at3g10870 (MES17) 0.49 at3g12955 0.34 at5g47530 0.29 at1g05560 (UGT1)...”
- ARACNe-based inference, using curated microarray data, of Arabidopsis thaliana root transcriptional regulatory networks
Chávez, BMC plant biology 2014 - “...family protein 0.375002 1e-60 yes bcd AT1G54790 GDSL-like lipase/acylhydrolase superfamily protein 0.364787 1e-60 yes abcd AT2G04850 Auxin-responsive family protein 0.363144 1e-60 yes acd AT3G27200 Cupredoxin superfamily protein 0.362569 1e-60 yes abcd AT2G27740 Family of unknown function, DUF662 0.328449 1e-50 yes c AT5G01930 Glycoside hydrolase, family 5...”
- Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis
Cassan-Wang, Frontiers in plant science 2013 - “...AT1G56720 0.71 Protein kinase superfamily protein 251069_at AT5G01930 MAN6 0.70 Glycosyl hydrolase superfamily protein 263629_at AT2G04850 0.70 Auxin-responsive family protein 250933_at AT5G03170 FLA11 0.69 FASCICLIN-like arabinogalactan-protein 11 262796_at AT1G20850 XCP2 0.68 xylem cysteine peptidase 2 245864_at AT1G58070 0.68 Unknown protein 258938_at AT3G10080 0.68 RmlC-like cupins superfamily...”
GRMZM2G057467 AIR12 precursor from Zea mays
Aligns to 92:192 / 216 (46.8%), covers 100.0% of PF04526, 69.5 bits
K7VGM8 AIR12 from Zea mays
Aligns to 92:192 / 216 (46.8%), covers 100.0% of PF04526, 69.5 bits
GRMZM2G331638 uncharacterized protein LOC100217044 precursor from Zea mays
Aligns to 91:203 / 408 (27.7%), covers 99.0% of PF04526, 60.2 bits
- Chilling Tolerance in Maize: Insights into Advances-Toward Physio-Biochemical Responses' and QTL/Genes' Identification
Ma, Plants (Basel, Switzerland) 2022 - “...leaf color, tissue damage linkage analysis and RNA-seq 2 QTLs 27 candidate genes: GRMZM2G003506, GRMZM2G331652, GRMZM2G331638, GRMZM2G155242, GRMZM2G107774, GRMZM2G103079, GRMZM2G395121, GRMZM2G094444, GRMZM2G098714, GRMZM2G173067, GRMZM2G163043, GRMZM2G095382, GRMZM2G014560, GRMZM2G096753, GRMZM2G170692, GRMZM2G153488, GRMZM2G153359, GRMZM2G153263, GRMZM2G098474, GRMZM2G165290, GRMZM2G175177, GRMZM2G159904, GRMZM5G841914, GRMZM2G178603, GRMZM2G178509, GRMZM2G178497 and GRMZM2G139837 [ 64 ] 2022 seed...”
Or search for genetic data about PF04526 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory