Family Search for PF04759 (DUF617)
PF04759 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
LOC100263245 protein MIZU-KUSSEI 1 from Vitis vinifera
Aligns to 65:222 / 223 (70.9%), covers 100.0% of PF04759, 235.9 bits
MIZ1_ARATH / O22227 Protein MIZU-KUSSEI 1 from Arabidopsis thaliana (Mouse-ear cress) (see 5 papers)
AT2G41660 MIZ1 (mizu-kussei 1) from Arabidopsis thaliana
NP_565953 MIZU-KUSSEI-like protein (Protein of unknown function, DUF617) from Arabidopsis thaliana
Aligns to 129:296 / 297 (56.6%), covers 100.0% of PF04759, 228.6 bits
- function: Plays a role in lateral root development by maintaining auxin levels. This function requires GNOM (GN/MIZ2) activity. Negatively regulates cytokinin sensitivity on root development. Positively regulates hydrotropism in roots.
disruption phenotype: No visible phenotype under normal growth conditions, but mutant plants are impaired in hydrotropic response. - The link between hydrotropism and phototropism in Arabidopsis roots
Yadav, Journal of experimental botany 2023 - “...al., 2007 ). The phenotypic changes result from a single recessive mutation in MIZ1 , At2g41660, which encodes a protein containing a domain (the MIZ domain) that is highly conserved among terrestrial plants such as rice and moss. Unfortunately, MIZ1 is a protein with an uncharacterized...”
- Unraveling the Diverse Roles of Neglected Genes Containing Domains of Unknown Function (DUFs): Progress and Perspective
Lv, International journal of molecular sciences 2023 - “...trichome development Arabidopsis [ 18 , 38 ] Other essential growth and development MIZ1 ( At2g41660 ) DUF617 PF04759 MIZ1 regulates lateral root development in Arabidopsis Arabidopsis [ 20 ] REL2 ( NP_001065395.1 ) DUF630; DUF632 PF04783; PF04782 Controls leaf rolling in rice Oryza sativa [...”
- Transcriptional network underpinning ploidy-related elevated leaf potassium in neo-tetraploids
Fischer, Plant physiology 2022 - “...MOT1 (AT2G25680), CASP3 (AT2G27370), FRU (AT2G28160), (AT2G28990), ZIP3 (AT2G32270), UCC1 (AT2G32300), (AT2G37820), (AT2G39430), (AT2G40240), MIZ1 (AT2G41660), (AT2G43590), VQ18 (AT2G44340), (AT2G45180), NF-YB5 (AT2G47810), (AT3G01345), (AT3G01572), RGF7 (AT3G02240), ABR (AT3G02480), HSFA1E (AT3G02990), (AT3G11150), (AT3G18450), (AT3G24020), NIMIN-2 (AT3G25882), NUDX13 (AT3G26690), (AT3G29647), QQS (AT3G30720), (AT3G46280), (AT3G51340), CYP76G1 (AT3G52970), (AT3G56730), (AT4G07820),...”
- Root electrotropism in Arabidopsis does not depend on auxin distribution but requires cytokinin biosynthesis
Salvalaio, Plant physiology 2022 - “...) under accession numbers: AUX1 , AT2G38120; PIN2 , AT5G57090; CYP735A1 , AT5G38450; MIZ1 , AT2G41660; ATIPT1 , AT1G68460; ATIPT3 , AT3G63110; ATIPT5 , AT5G19040; and ATIPT7 , AT3G23630. Supplemental data The following materials are available in the online version of this article. Supplemental Figure S1...”
- Root Plasticity in the Pursuit of Water
Fromm, Plants (Basel, Switzerland) 2019 - “...response first revealed an ahydrotropic mutant with a point mutation in a gene named MIZ1 (At2g41660) [ 68 ], until recently of unknown cellular or biochemical function. The mutation in MIZ1 that abolished hydrotropism substitutes a Glycine to Glutamic acid at position 235 [ 68 ]....”
- BR-INSENSITIVE1 regulates hydrotropic response by interacting with plasma membrane H+-ATPases in Arabidopsis
Yuan, Plant signaling & behavior 2018 - “...Arabidopsis, such as the Mizu-kussei1 (MIZ1; AT2G41660), Mizu-kussei2 (MIZ2/GNOM; AT1G13980), and altered hydrotropic response1 (ahr1), no hydrotropic response1...”
- A gene essential for hydrotropism in roots
Kobayashi, Proceedings of the National Academy of Sciences of the United States of America 2007 - “...in miz1, one in At2g41570 and the other in At2g41660. Mutant lines for At2g41570 and At2g41660 are shown with their T-DNA insertion sites: SALK113906 for...”
- “...in miz1 plants with an introduced At2g41570 or At2g41660 gene and hydrotropic response of the T-DNA insertion lines. (A) Complementation of miz1 by introduction...”
- Arabidopsis SHORT INTEGUMENTS 2 is a mitochondrial DAR GTPase
Hill, Genetics 2006 - “...comprises four complete predicted coding regions (At2g41660, 41670, 41680, and 41690; TAIR, http://www.arabidopsis. org/). Subclones spanning these coding...”
- Recovery of root hydrotropism in miz1 mutant by eliminating root gravitropism.
Li, Journal of plant physiology 2024 (PubMed)- GeneRIF: Recovery of root hydrotropism in miz1 mutant by eliminating root gravitropism.
- MIZU-KUSSEI1 (MIZ1) and GNOM/MIZ2 control not only positive hydrotropism but also phototropism in Arabidopsis roots.
Pang, Journal of experimental botany 2023 (PubMed)- GeneRIF: MIZU-KUSSEI1 (MIZ1) and GNOM/MIZ2 control not only positive hydrotropism but also phototropism in Arabidopsis roots.
- MIZ1 acts downstream of PGM1 in regulating root hydrotropism.
Liu, Biochemical and biophysical research communications 2023 (PubMed)- GeneRIF: MIZ1 acts downstream of PGM1 in regulating root hydrotropism.
- MIZ1 regulates ECA1 to generate a slow, long-distance phloem-transmitted Ca2+ signal essential for root water tracking in Arabidopsis.
Shkolnik, Proceedings of the National Academy of Sciences of the United States of America 2018 - GeneRIF: the inhibition of ECA1 by MIZ1 changes the balance between cytosolic Ca(2+) influx and efflux and generates the cytosolic Ca(2+) signal required for water tracking.
- MIZ1-regulated hydrotropism functions in the growth and survival of Arabidopsis thaliana under natural conditions.
Iwata, Annals of botany 2013 - GeneRIF: MIZ1-regulated hydrotropism functions in the growth and survival of Arabidopsis thaliana
- MIZ1, an essential protein for root hydrotropism, is associated with the cytoplasmic face of the endoplasmic reticulum membrane in Arabidopsis root cells.
Yamazaki, FEBS letters 2012 (PubMed)- GeneRIF: MIZ1-GFP was detected at high levels in cortical cells and lateral root cap cells and accumulated in compartments in cortical cells.
- Overexpression of MIZU-KUSSEI1 enhances the root hydrotropic response by retaining cell viability under hydrostimulated conditions in Arabidopsis thaliana.
Miyazawa, Plant & cell physiology 2012 (PubMed)- GeneRIF: Overexpression of MIZ1 enhances tolerance to osmotic stress.
- Hormonal regulation of lateral root development in Arabidopsis modulated by MIZ1 and requirement of GNOM activity for MIZ1 function.
Moriwaki, Plant physiology 2011 - GeneRIF: MIZ1 plays a role in lateral root development by maintaining auxin levels and its function requires GNOM activity.
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AT5G23100 hypothetical protein from Arabidopsis thaliana
Aligns to 90:276 / 277 (67.5%), covers 100.0% of PF04759, 225.9 bits
AT3G25640 hypothetical protein from Arabidopsis thaliana
Aligns to 98:266 / 267 (63.3%), covers 100.0% of PF04759, 224.4 bits
- Genome-Wide Transcriptional Response of Avocado to <i>Fusarium</i> sp. Infection
Pale, Plants (Basel, Switzerland) 2024 - “..., AT2G34710 , AT2G34710 , AT2G34710 , AT3G53920 , AT4G37170 , AT5G01530 , AT3G04650 , AT3G25640 , AT5G43680 , AT5G60690 , and AT5G60690 ), followed by the duo Ctg0854_RaGOO_5920 and miR157d , which share three target genes ( AT3G44730 , ATKP1 , and AT5G42940 ). chr11_RaGOO_17754...”
AT5G42680 hypothetical protein from Arabidopsis thaliana
Aligns to 77:236 / 238 (67.2%), covers 99.4% of PF04759, 219.0 bits
- Differential transcriptome analysis reveals insight into monosymmetric corolla development of the crucifer Iberis amara
Busch, BMC plant biology 2014 - “..., (H) Rcd1-like and (I) a contig with homology to a protein of unknown function (At5g42680). aBp, abaxial petal; aDp, adaxial petal. From these data, a general picture emerges, where adaxial petals are characterized by a pool of transcripts enriched in genes involved in cell wall...”
- “...expression in adaxial petals of a gene that shows highest homology to the Arabidopsis gene At5G42680 encoding for a protein of unknown function (Figure 4 I), confirms the differential expression of a member of this highly abundant class of transcripts upregulated in adaxial petals. In summary,...”
AT1G21050 hypothetical protein from Arabidopsis thaliana
Aligns to 87:244 / 245 (64.5%), covers 100.0% of PF04759, 218.8 bits
GRMZM2G043117 plant-specific domain TIGR01570 family protein from Zea mays
Aligns to 117:292 / 293 (60.1%), covers 100.0% of PF04759, 218.0 bits
AT5G65340 hypothetical protein from Arabidopsis thaliana
Aligns to 83:249 / 253 (66.0%), covers 99.4% of PF04759, 204.0 bits
AT2G22460 hypothetical protein from Arabidopsis thaliana
Aligns to 85:242 / 245 (64.5%), covers 99.4% of PF04759, 201.6 bits
- The heat is on: a simple method to increase genome editing efficiency in plants
Blomme, BMC plant biology 2022 - “...vectors targeting PDS3 as well as seven additional Cas9 targets: GLABRA1 ( GL1-2; AT3G27920 ), AT2G22460 , IMMUTANS1 ( IM1; AT4G22260 ), VARIEGATED1-1 ( VAR1; AT5G42270 ) and VAR1-2 , TRANSPORT INHIBITOR RESPONSE 1-1 ( TIR1-1; AT3G62980 ) or AT4G12990 (Fig. 3 ). All transformants were...”
- “...results obtained in T2 lines (Figs. 1 and 3 ). For two targets, VAR1-1 and AT2G22460 , the average increase in indels was 27% upon 3xHS. For the four remaining targets, the effect of 3xHS was more pronounced: 44% for IM-1 , 55% for VAR1-2 ,...”
AT1G76610 hypothetical protein from Arabidopsis thaliana
Aligns to 76:225 / 226 (66.4%), covers 100.0% of PF04759, 198.2 bits
Or search for genetic data about PF04759 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory