Family Search for PF04783 (DUF630)

PF04783 hits 17 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AT2G19090 hypothetical protein from Arabidopsis thaliana
Aligns to 1:58 / 814 (7.1%), covers 94.9% of PF04783, 94.8 bits

• Genome-Wide Association Studies and Transcriptome Changes during Acclimation and Deacclimation in Divergent Brassica napus Varieties
  Horvath, International journal of molecular sciences 2020
  • “...to 9387697 AT5G04120 Phosphoglycerate mutase family protein S1_38158858 C03 57859505 57759505-5799505 BnaC03g68090D 57742606 to 57744811 AT2G19090 Protein of unknown function (DUF630 and DUF632) BnaC03g68100D 57751536 to 57752049 AT4G30074 low-molecular-weight cysteine-rich 19 BnaC03g68110D 57761207 to 57764215 AT4G30060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase protein BnaC03g68120D 57765406 to 57766578 AT4G30010 LOCATED IN:...”
• Identification of Loci and Candidate Genes Responsible for Pod Dehiscence in Soybean via Genome-Wide Association Analysis Across Multiple Environments
  Hu, Frontiers in plant science 2019
  • “...small nucleolar RNA-associated protein Glyma09g06460 AT3G20250 Arabidopsis Pumilio (APUM) protein Glyma09g06470 AT2G19080 Metaxin-like protein Glyma09g06480 AT2G19090 DUF630 family protein Glyma09g06491 ATCG00905 / Glyma09g06500 / Chloroplast gene encoding ribosomal protein s12 Glyma09g06521 AT5G54780 Gyp1p superfamily protein Expression Patterns of Putative Genes According to the Soybase 7 ,...”
• Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator Noccaea caerulescens
  Ó, PloS one 2011
  • “...5 region of NcHMA4 -3 in addition to four orthologues to At2g19060, At2g19070, At2g19080 and At2g19090, which were syntenic to this region in A. thaliana ( Figure S4 , Data S4 ). As indicated through locus specific PCR analysis ( Figure 2 ), sequence data from...”
  • “...the 5 end of NcHMA4 -3. Brown arrows illustrate flanking genes At2g19060, At2g19070, At2g19080 and At2g19090 and their transcriptional directions. Flanking genes are labelled according to their A. thaliana orthologues. Blue script and lines highlight sites in the fosmid which were 100% specific for that primer....”

AT4G30130 hypothetical protein from Arabidopsis thaliana
Aligns to 1:59 / 725 (8.1%), covers 100.0% of PF04783, 93.5 bits

• Genome-wide association studies identify heavy metal ATPase3 as the primary determinant of natural variation in leaf cadmium in Arabidopsis thaliana
  Chao, PLoS genetics 2012
  • “...Heavy Metal ATPase 2 12074 AT4G30120 14730401 14733510 Reverse HMA3, Heavy Metal ATPase 3 3148 AT4G30130 14734819 14737978 Forward unknown protein 1839 AT4G30140 14738387 14740676 Reverse CDEF1, Cuticle Destructing Factor 1 4018 AT4G30150 14742452 14749987 Forward unknown protein 5794 AT4G30160 14753432 14760189 Forward VLN4,Villin-Like actin-bindingprotein 4...”

bZIP107 uncharacterized protein LOC778196 from Glycine max
Aligns to 1:59 / 783 (7.5%), covers 100.0% of PF04783, 93.3 bits

• Hydrogen Sulfide in Plants: Crosstalk with Other Signal Molecules in Response to Abiotic Stresses
  Wang, International journal of molecular sciences 2021
  • “..., CsH8 , CsH9 and CsHA10 [ 83 ] dehydration Trifolium repens seedlings bZIP37 , bZIP107 , DREB2 , DREB4 and WRKY108715 [ 84 ] H 2 S and ETH osmotic stress S. lycopersicum seedlings LeACO1 and LeACO2 [ 94 ] H 2 S and Pro...”

AT1G21740 hypothetical protein from Arabidopsis thaliana
Aligns to 1:59 / 953 (6.2%), covers 100.0% of PF04783, 92.2 bits

• Floral heteromorphy in Primula vulgaris: progress towards isolation and characterization of the S locus
  Li, Annals of botany 2011
  • “...Primula S locus BAC-end Contig 51M17-F 46L18-F 1 1 AT1G21740 AT1G21750 1e-20 9e-24 20E12-R 20L16-R 1 1 AT1G44414 AT1G77390 2e-25 9e-24 82I1-R 28H15-F 2 2...”
• Prediction of the plant beta-barrel proteome: a case study of the chloroplast outer envelope
  Schleiff, Protein science : a publication of the Protein Society 2003
  • “...soluble test protein, the transcription factor encoded by At1g21740 containing a -sheet structure and a calculated BBS of 0.662 by using the standard algorithm,...”

AT4G35240 hypothetical protein from Arabidopsis thaliana
Aligns to 1:59 / 828 (7.1%), covers 100.0% of PF04783, 91.8 bits

• Transcriptome-wide high-throughput deep m(6)A-seq reveals unique differential m(6)A methylation patterns between three organs in Arabidopsis thaliana
  Wan, Genome biology 2015
  • “...AT1G77680 Nucleotide binding, regulation of transcription AT3G08940, AT3G07650, AT5G66570, AT5G12400, AT2G42270, AT1G70060, AT2G40770, AT5G04290, AT1G33700, AT4G35240, AT1G14790 [ 18 ] sn (o) RNA or other ncRNA AT4G13495, AT5G09585 ATP binding, ATPase or kinase activity AT2G20850, AT2G42270, AT2G40770, AT1G17750 Signaling transduction AT5G22690, AT2G20850, AT5G13000, AT1G64060, AT1G17750 [...”

LOC18042616 nitrate regulatory gene2 protein from Citrus x clementina
Aligns to 1:58 / 637 (9.1%), covers 98.3% of PF04783, 91.1 bits

• Transcriptome and Metabolome Comparison of Smooth and Rough Citrus limon L. Peels Grown on Same Trees and Harvested in Different Seasons
  Liu, Frontiers in plant science 2021
  • “...(TF) (ERF003, LOC18053793 ), GPI-anchored protein LLG1 ( LOC18055492 ), nitrate regulatory gene 2 ( LOC18042616 ), protein GRAVITROPIC IN THE LIGHT 1 (GIL1, LOC18046532 ), syntaxin-related protein KNOLLE ( LOC18049273 ), TF bHLH62 ( LOC18033163 ), and zinc transporter 1 ( LOC18032278 ) ( Supplementary...”

NRG2_ARATH / Q93YU8 Nitrate regulatory gene2 protein; NRG2 protein from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G60320 DNA binding from Arabidopsis thaliana
Aligns to 1:59 / 796 (7.4%), covers 100.0% of PF04783, 90.7 bits

• function: Required for nitrate signaling. Regulates expression of the nitrate-responsive genes NIA1, NIR1, NRT2.1 and NPF6.3/NRT1.1.
  subunit: Interacts with NLP7.
  disruption phenotype: Under high nitrate concentration, seedlings are slightly smaller and display later flowering than wild-type. Under low nitrate concentration, seedlings appear normal. Nitrate accumulation of the seedlings and roots is significantly lower than in wild-type, however no difference of nitrate accumulation in leaves. Nitrate content differences in roots and leaves may be due to the reduced expression of NPF6.3/NRT1.1 in roots and the increased expression of NPF7.2/NRT1.8 in leaves. After nitrate treatment, altered expression of many genes involved in nitrogen-related clusters including nitrate transport and response to nitrate.
• Alkaloid production and response to natural adverse conditions in Peganum harmala: in silico transcriptome analyses
  Jazayeri, Biotechnologia 2022
  • “...most abundant proteins found as UniProtKB hits with more than 20 top-matched hits were Q9SZL8, Q93YU8, Q9ZT94, A0A1P8AUY4, P0C2F6, Q6NQJ8, Q9S7I6, and O23372, as presented in Table 2 . These proteins were chosen because they were the most abundant in the generated integrated transcriptome. These proteins...”
  • “...processes (BP) such as growth and development and stress resistance (Ma and Li, 2018 ). Q93YU8 or nitrate regulatory gene 2 protein is involved in nitrate signaling and regulation (Xu et al., 2016 ). It causes nitrate accumulation in plants by modulating nitrate uptake by roots...”
• Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana
  Mattei, Frontiers in plant science 2016
  • “...NU Q93ZG7 25 ADTVEKVPTVVES(0.005)S(0.004)S(0.007)S(0.013)S(0.011)T(0.011)VEAS(0.186)N S (0.762)AEK Tr Tr Tr ns Putative bZIP protein At3g60320 NU Q93YU8 147 IPHIIS(0.15)ES(0.649)S(0.189)PS(0.019)S(0.08) S (0.912)PR Tr Tr Tr 3.0/ns Nuclear/nucleolar GTPase (AtNug2) At1g52980 NU Q9C923 116 ERKIPM S (1)IIT(1)DNK Tr Tr Tr ns Nuclear/nucleolar GTPase (AtNug2) At1g52980 NU Q9C923 119 ERKIPMS(1)II...”
• Mapping of a novel clubroot disease resistance locus in Brassica napus and related functional identification
  Jiang, Frontiers in plant science 2022
  • “...WRKY family transcription factor LOC106441903 AT2G44770 91.61 ELMO/CED-12 family LOC106438229 AT2G44790 77.99 uclacyanin 2 LOC106438230 AT3G60320 80.50 bZIP domain class transcription factor (DUF630 and DUF632) LOC106438231 AT2G44940 78.01 Ethylene-responsive transcription factor 34 LOC106441904 AT2G45060 88.52 alanine-tRNA ligase LOC106438232 AT2G45060 85.02 alanine-tRNA ligase LOC106438234 AT2G45070 85.88 Preprotein...”
• Alkaloid production and response to natural adverse conditions in Peganum harmala: in silico transcriptome analyses
  Jazayeri, Biotechnologia 2022
  • “...FAR1-RELATED SEQUENCE 5, (FAR1: FAR-RED IMPAIRED RESPONSE 1) AT4G38180 Q93YU8 25 nitrate regulatory gene2 protein AT3G60320 Q9ZT94 24 retrovirus-related Pol polyprotein from transposon RE2 (retro element 2) (AtRE2) [includes: protease RE2 (EC 3.4.23.-); reverse transcriptase RE2 (EC 2.7.7.49); endonuclease RE2] AT4G02960 A0A1P8AUY4 23 midasin (AtMDN1) (dynein-related...”
• WGCNA Analysis of Salt-Responsive Core Transcriptome Identifies Novel Hub Genes in Rice
  Zhu, Genes 2019
  • “...AT2G41010 Calmodulin (CAM)-binding protein of 25 kDa LOC_Os02g13800 AT3G24520 Heat shock transcription factor C1 LOC_Os02g43770 AT3G60320 Protein of unknown function (DUF630 and DUF632) Grey LOC_Os02g51080 AT1G74470 Pyridine nucleotide-disulphide oxidoreductase family protein LOC_Os03g20700 AT5G13630 Magnesium-chelatase subunit chlH, chloroplast, putative/Mg-protoporphyrin IX chelatase, LOC_Os01g17170 AT3G56940 Dicarboxylate diiron protein CRD1...”
• Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana
  Mattei, Frontiers in plant science 2016
  • “...At3g53110 CY; NU Q93ZG7 25 ADTVEKVPTVVES(0.005)S(0.004)S(0.007)S(0.013)S(0.011)T(0.011)VEAS(0.186)N S (0.762)AEK Tr Tr Tr ns Putative bZIP protein At3g60320 NU Q93YU8 147 IPHIIS(0.15)ES(0.649)S(0.189)PS(0.019)S(0.08) S (0.912)PR Tr Tr Tr 3.0/ns Nuclear/nucleolar GTPase (AtNug2) At1g52980 NU Q9C923 116 ERKIPM S (1)IIT(1)DNK Tr Tr Tr ns Nuclear/nucleolar GTPase (AtNug2) At1g52980 NU Q9C923...”
• Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure
  Dumas, BMC genomics 2016
  • “...b Glycine cleavage T-protein family 0.00 1.00E+00 0.16 1.00E+00 0.32 1.00E+00 1.17 7.45E-12 1.14 0.00E+00 AT3G60320 Protein of unknown function (DUF630 and DUF632) 0.03 1.00E+00 0.18 1.00E+00 0.72 1.00E+00 1.10 3.72E-10 0.77 6.14E-04 AT5G24760 GroES-like zinc-binding dehydrogenase family protein 0.04 1.00E+00 0.50 1.00E+00 0.34 1.00E+00 1.08...”
• Coronatine-insensitive 1 (COI1) mediates transcriptional responses of Arabidopsis thaliana to external potassium supply
  Armengaud, Molecular plant 2010
  • “...protein 10.9 0.6 0.6 0.7 0.7 At1g48610 Regulatory protein HAL3B 2.9 0.7 0.9 1.5 1.6 At3g60320 bZIP protein 11.1 0.6 0.5 1.4 1.7 At4g17980 NAM-TF NAM (no apical meristem)-like 11.5 0.5 0.7 1.3 1.6 At5g14260 Putative protein 2.1 0.5 0.8 1.4 1.5 At2g31680 RABA5D GTP-binding protein,...”
• Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana
  Mayer, Genome research 2001
  • “...C AT2g44830 (1.4e-170) W AT4g17510 (3.8e-71) C AT3g60320 (9.6e-74) C AT4g17500 (6.6e-35) W; AT5g47220 (4.7e-31) C; AT2g44840 (4.1e-30) W AT2g44850 (8.9e-63)...”

AT1G52320 hypothetical protein from Arabidopsis thaliana
Aligns to 1:59 / 798 (7.4%), covers 100.0% of PF04783, 87.0 bits

• IQD1 Involvement in Hormonal Signaling and General Defense Responses Against Botrytis cinerea
  Barda, Frontiers in plant science 2022
  • “...(Spindly) 2.026 Brassinosteroids AT4G25420 GA20OX1 (Gibberellin 20-Oxidase 1) 2.309 AT3G20730 BIN3 (Brassinosteroid Insensitive 3) 2.064 AT1G52320 2OG-Fe(ll)-dependent oxygenase 2.565 AT1G74360 Leucine-rich repeat transmembrane protein kinase 3.282 AT3G10185 Gibberellin-regulated family protein 2.795 Hormone biosynthesis or metabolism genes are in red and hormone response genes are in black....”

AT2G27090 hypothetical protein from Arabidopsis thaliana
Aligns to 1:59 / 743 (7.9%), covers 100.0% of PF04783, 85.9 bits

• The family of LSU-like proteins
  Sirko, Frontiers in plant science 2014
  • “...GU066886 Joka 38 144 DUF248/methyltransferase At4g18030 At1g26850 GU066887 Joka 39 119 DUF632/Function unknown, leucine zipper At2g27090 GU066888 Joka 40 515 Function unknown, nucleoporin-like At4g37130 GU066889 Joka 41 99 Poly A binding At1g49760 At4g34110 At2g23350 At1g22760 At1g71770 GU066890 Joka 42 77 FtsH protease At2g26140 GU066891 Joka 43...”

AT1G77500 hypothetical protein from Arabidopsis thaliana
Aligns to 1:59 / 879 (6.7%), covers 100.0% of PF04783, 85.1 bits

• The Arabidopsis wall associated kinase-like 10 gene encodes a functional guanylyl cyclase and is co-expressed with pathogen defense related genes
  Meier, PloS one 2010
  • “...finger (C2H2 type) family protein 22 AT5G67080 0.852 Similar to mitogen-activated PKKK 20 (MAPKKK20) 23 AT1G77500 0.850 N-terminal protein myristoylation 24 AT5G48400 0.848 Glutamate receptor family protein (GLR1.2) 25 AT4G17500 0.845 Ethylene-Response-Factor -1A ( ERF-1A ) 26 AT5G64890 0.844 Elicitor peptide 2 precursor (PROPEP2) 27 AT1G66090...”

REL2_ORYSJ / Q9AQW1 Protein ROLLING AND ERECT LEAF 2 from Oryza sativa subsp. japonica (Rice) (see paper)
Aligns to 1:59 / 767 (7.7%), covers 100.0% of PF04783, 85.0 bits

• function: Involved in the regulation of leaf shape formation (PubMed:27473144). May function by coordinating the expression of genes associated with leaf and bulliform cell development (PubMed:27473144).
  disruption phenotype: Adaxially rolling and erect leaves which leads to plants with erect architecture and reduced lamina joint angle (PubMed:27473144). Abnormal bulliform cell number, size and arrangement in leaf blades (PubMed:27473144). Dark-green leaves with increased levels of chlorophylls (PubMed:27473144). Reduced number of tillers, altered grain morphology, and reduced number of grains per main panicle (PubMed:27473144). Reduced number and length of adventitious roots (PubMed:27473144).

AT4G39790 hypothetical protein from Arabidopsis thaliana
Aligns to 9:70 / 657 (9.4%), covers 100.0% of PF04783, 84.6 bits

• Integrating Genome-Wide Association Study, Transcriptome and Metabolome Reveal Novel QTL and Candidate Genes That Control Protein Content in Soybean
  Zhao, Plants (Basel, Switzerland) 2024
  • “...1.20 1.12 1.65 AT5G10250 Phototropic-responsive NPH3 family protein Glyma.08G137900 rs8158 8 10,476,797 1.32 1.58 1.09 AT4G39790 Protein of unknown function (DUF630 and DUF632) Glyma.12G114100 rs12338 12 11,269,928 6.26 NA NA AT4G28350 Concanavalin A-like lectin protein kinase family protein Glyma.08G135800 rs8158 8 104,76,797 2.89 1.97 2.46 AT5G65000...”

AT1G20530 hypothetical protein from Arabidopsis thaliana
Aligns to 1:59 / 614 (9.6%), covers 98.3% of PF04783, 78.1 bits

• Identification of immunity-related genes in Arabidopsis and cassava using genomic data
  Leal, Genomics, proteomics & bioinformatics 2013
  • “...CLV2, AT4G09150, AT1G63280, AT2G33600, AT3G43890, AT1G24650 RPS4 AT5G45250 TIR-NBS-LRR class disease resistance protein APX3, BAM1, AT1G20530, ATKDSA2 ER AT2G26330 Homologous to receptor protein kinases; contains a cytoplasmic protein kinase catalytic domain, a transmembrane region and an extracellular LRR AT2G20110, TUBG1, TSD2, AT4G04170, AT2G38000, AT1G17210, AT3G06540, SWI2,...”

APSR1_ARATH / A0A178VBJ0 Protein ALTERED PHOSPHATE STARVATION RESPONSE 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 1:59 / 640 (9.2%), covers 100.0% of PF04783, 77.8 bits

• function: Required for the coordination of cell differentiation and cell elongation in the root tip (PubMed:23498857). Required for the coordination of cell processes necessary for correct root growth in response to phosphate starvation, through the modulation of the auxin transporter protein PIN7 (PubMed:23498857).
  disruption phenotype: Defects in primary root elongation and enhanced root hair elongation.

NP_001190052 pyridoxal-phosphate-dependent serine hydroxymethyltransferase, putative (DUF632) from Arabidopsis thaliana
Aligns to 1:59 / 798 (7.4%), covers 100.0% of PF04783, 76.9 bits

• APSR1, a novel gene required for meristem maintenance, is negatively regulated by low phosphate availability.
  González-Mendoza, Plant science : an international journal of experimental plant biology 2013 (PubMed)
  • GeneRIF: APSR1 is required for the coordination of cell processes necessary for correct root growth in response to phosphate starvation conceivably by direct or indirect modulation of PIN7. [APSR1]

AT3G51290 proline-rich family protein from Arabidopsis thaliana
Aligns to 1:59 / 602 (9.8%), covers 100.0% of PF04783, 72.1 bits

• Comprehensive Analysis of Subcellular Localization, Immune Function and Role in Bacterial wilt Disease Resistance of Solanum lycopersicum Linn. ROP Family Small GTPases
  Wang, International journal of molecular sciences 2022
  • “...CA00g82910, CA00g84620, CA01g27430, CA02g04310, CA02g05500, CA02g21300, CA03g28070, CA04g05500, and CA08g19280; AtAPSR1 and AtRop1 11 : At3g51290, At3g51300, At1g20090, At2g17800, At1g75840, At4g35950, At4g35020, At5g45970, At2g44690, At4g28950, At3g48040, and At5g62880. Acknowledgments We are very grateful to Tsuyoshi Nakagawa and Rosa Lozano-Duran for kindly providing the Gateway-pGWB vectors. We...”
• Braving the attitude of altitude: Caragana jubata at work in cold desert of Himalaya
  Bhardwaj, Scientific reports 2013
  • “...3, 6, 12, and 24h for aerial tissues. Microarray data for Arabidopsis genes At4g04720 and At3g51290, homologues of CjCDPK and CjMce family , respectively were not available in database and hence could not be included in the analysis ( Supplementary Fig. S4 and Supplementary Table S4...”

Q8BGH1 Uncharacterized protein from Mus musculus
Aligns to 13:75 / 642 (9.8%), covers 83.1% of PF04783, 59.1 bits

• Differential proteomic and behavioral effects of long-term voluntary exercise in wild-type and APP-overexpressing transgenics.
  Rao, Neurobiology of disease 2015
  • “...<.05 MAPK/PI3K signaling Q9CQQ8 U6 snRNA-associated Sm-like LSm7 Lsm7 11.6 2 9.3 <.01 RNA degradation Q8BGH1 Uncharacterized 73.3 2 3.6 <.05 Unknown All proteins are listed that had significantly different main or interaction effects using 2 2 ANOVAs followed by Fisher's protected LSD; df = 13...”

Or search for genetic data about PF04783 in the Fitness Browser