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Family Search for PF04852 (ALOG_dom)

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Running HMMer for PF04852

PF04852 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NP_001306073 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 from Solanum lycopersicum
Aligns to 47:172 / 208 (60.6%), covers 99.2% of PF04852, 228.7 bits

LOC107943309, XP_016732548 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like from Gossypium hirsutum
Aligns to 54:179 / 216 (58.3%), covers 99.2% of PF04852, 227.1 bits

LOC21408627 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 from Morus notabilis
Aligns to 39:164 / 245 (51.4%), covers 96.8% of PF04852, 226.7 bits

GRMZM2G359892 putative protein of unknown function (DUF640) domain family protein from Zea mays
Aligns to 36:161 / 247 (51.0%), covers 99.2% of PF04852, 225.8 bits

LOC18774140 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 from Prunus persica
Aligns to 42:167 / 232 (54.3%), covers 98.4% of PF04852, 224.8 bits

AT1G07090 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) from Arabidopsis thaliana
Aligns to 19:144 / 196 (64.3%), covers 96.8% of PF04852, 223.8 bits

LSH3_ARATH / O82268 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3; Protein ORGAN BOUNDARY 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G31160 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) from Arabidopsis thaliana
NP_565716 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) from Arabidopsis thaliana
Aligns to 42:167 / 219 (57.5%), covers 96.8% of PF04852, 223.6 bits

GRMZM2G147241 putative protein of unknown function (DUF640) domain family protein from Zea mays
Aligns to 27:152 / 200 (63.0%), covers 96.0% of PF04852, 223.2 bits

XP_012089329 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 from Jatropha curcas
Aligns to 35:161 / 198 (64.1%), covers 96.8% of PF04852, 222.9 bits

G1L6_ORYSJ / Q6K5X1 Protein G1-like6; OsG1L6; Protein ABNORMAL FLOWER AND DWARF 1; Protein BEAK LIKE SPIKELET 1; Protein BEAK-SHAPED GRAIN 1; Protein TRIANGULAR HULL 1 from Oryza sativa subsp. japonica (Rice) (see 6 papers)
XP_015624971 protein G1-like6 from Oryza sativa Japonica Group
Aligns to 69:193 / 248 (50.4%), covers 97.6% of PF04852, 222.4 bits

GRMZM2G162109 uncharacterized protein LOC100273939 from Zea mays
Aligns to 40:165 / 247 (51.0%), covers 99.2% of PF04852, 222.3 bits

AT2G42610 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) from Arabidopsis thaliana
NP_565978 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) from Arabidopsis thaliana
Aligns to 13:138 / 177 (71.2%), covers 98.4% of PF04852, 222.2 bits

LSH4_ARATH / Q9LW68 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4; Protein ORGAN BOUNDARY 4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_001078202 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) from Arabidopsis thaliana
AT3G23290 LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4) from Arabidopsis thaliana
Aligns to 33:161 / 195 (66.2%), covers 93.7% of PF04852, 222.1 bits

AT3G04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) from Arabidopsis thaliana
NP_187101 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) from Arabidopsis thaliana
Aligns to 21:146 / 201 (62.7%), covers 98.4% of PF04852, 221.5 bits

LSH1_ARATH / Q6NNI3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; Protein ORGAN BOUNDARY 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_198201 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) from Arabidopsis thaliana
AT5G28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) from Arabidopsis thaliana
Aligns to 13:138 / 190 (66.3%), covers 99.2% of PF04852, 221.5 bits

AT5G58500 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) from Arabidopsis thaliana
Aligns to 7:133 / 182 (69.8%), covers 97.6% of PF04852, 220.5 bits

8p5qA / O82268 8p5qA
Aligns to 1:116 / 129 (89.9%), covers 91.3% of PF04852, 220.5 bits

LOC4338491 protein G1-like9 from Oryza sativa Japonica Group
Aligns to 53:180 / 284 (45.1%), covers 96.8% of PF04852, 219.7 bits

LOC21387330 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 from Morus notabilis
Aligns to 29:155 / 194 (65.5%), covers 96.0% of PF04852, 218.8 bits

LOC4341811 protein G1-like2 from Oryza sativa Japonica Group
Aligns to 14:135 / 277 (44.0%), covers 94.4% of PF04852, 217.4 bits

AT1G78815 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) from Arabidopsis thaliana
Aligns to 28:153 / 195 (64.6%), covers 99.2% of PF04852, 217.3 bits

XP_004233194 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like from Solanum lycopersicum
Aligns to 28:151 / 181 (68.5%), covers 96.0% of PF04852, 215.5 bits

XP_004239743 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like from Solanum lycopersicum
Aligns to 30:154 / 211 (59.2%), covers 94.4% of PF04852, 214.1 bits

AT4G18610 LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9) from Arabidopsis thaliana
Aligns to 21:151 / 191 (68.6%), covers 97.6% of PF04852, 210.2 bits

AT1G16910 LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8) from Arabidopsis thaliana
Aligns to 11:136 / 164 (76.8%), covers 96.0% of PF04852, 209.3 bits

G1_ORYSJ / Q8GVZ6 Protein G1; Protein ELONGATED EMPTY GLUME from Oryza sativa subsp. japonica (Rice) (see 2 papers)
Aligns to 12:169 / 276 (57.2%), covers 92.9% of PF04852, 186.3 bits

RPP2A_ARATH / F4JT78 Disease resistance protein RPP2A; EC 3.2.2.6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_193685 nucleoside-triphosphatase/transmembrane receptor/nucleotide binding/ATP binding protein from Arabidopsis thaliana
AT4G19500 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor from Arabidopsis thaliana
Aligns to 482:535 / 1309 (4.1%), covers 33.3% of PF04852, 43.5 bits

Or search for genetic data about PF04852 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory