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Family Search for PF04852 (DUF640)

PF04852.12 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NP_001306073 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 from Solanum lycopersicum
Aligns to 47:172 / 208 (60.6%), covers 99.2% of PF04852, 225.7 bits

LOC21408627 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 from Morus notabilis
Aligns to 39:164 / 245 (51.4%), covers 96.8% of PF04852, 224.7 bits

LSH3_ARATH / O82268 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3; Protein ORGAN BOUNDARY 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G31160 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) (RefSeq) from Arabidopsis thaliana
NP_565716 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) from Arabidopsis thaliana
Aligns to 42:167 / 219 (57.5%), covers 96.8% of PF04852, 221.1 bits

GRMZM2G147241 putative protein of unknown function (DUF640) domain family protein from Zea mays
Aligns to 28:152 / 200 (62.5%), covers 96.0% of PF04852, 221.0 bits

AT1G07090 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) (RefSeq) from Arabidopsis thaliana
Aligns to 20:144 / 196 (63.8%), covers 96.0% of PF04852, 221.0 bits

GRMZM2G162109 uncharacterized protein LOC100273939 from Zea mays
Aligns to 40:165 / 247 (51.0%), covers 99.2% of PF04852, 220.0 bits

G1L6_ORYSJ / Q6K5X1 Protein G1-like6; OsG1L6; Protein ABNORMAL FLOWER AND DWARF 1; Protein BEAK LIKE SPIKELET 1; Protein BEAK-SHAPED GRAIN 1; Protein TRIANGULAR HULL 1 from Oryza sativa subsp. japonica (Rice) (see 6 papers)
XP_015624971 protein G1-like6 from Oryza sativa Japonica Group
Aligns to 69:193 / 248 (50.4%), covers 96.8% of PF04852, 219.9 bits

LSH4_ARATH / Q9LW68 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4; Protein ORGAN BOUNDARY 4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_001078202 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) from Arabidopsis thaliana
AT3G23290 LSH4 (LIGHT SENSITIVE HYPOCOTYLS 4) (RefSeq) from Arabidopsis thaliana
Aligns to 33:161 / 195 (66.2%), covers 93.7% of PF04852, 219.5 bits

AT2G42610 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) (RefSeq) from Arabidopsis thaliana
Aligns to 13:138 / 177 (71.2%), covers 98.4% of PF04852, 218.2 bits

LSH1_ARATH / Q6NNI3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; Protein ORGAN BOUNDARY 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) (RefSeq) from Arabidopsis thaliana
Aligns to 13:138 / 190 (66.3%), covers 98.4% of PF04852, 218.0 bits

AT5G58500 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) (RefSeq) from Arabidopsis thaliana
Aligns to 7:133 / 182 (69.8%), covers 97.6% of PF04852, 217.4 bits

AT3G04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) (RefSeq) from Arabidopsis thaliana
Aligns to 21:146 / 201 (62.7%), covers 98.4% of PF04852, 216.8 bits

LOC4338491 protein G1-like9 from Oryza sativa Japonica Group
Aligns to 53:180 / 284 (45.1%), covers 96.0% of PF04852, 216.8 bits

LOC21387330 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 from Morus notabilis
Aligns to 29:155 / 194 (65.5%), covers 96.8% of PF04852, 214.7 bits

XP_004233194 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like from Solanum lycopersicum
Aligns to 28:151 / 181 (68.5%), covers 96.0% of PF04852, 213.1 bits

AT1G78815 LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7) (RefSeq) from Arabidopsis thaliana
Aligns to 27:153 / 195 (65.1%), covers 98.4% of PF04852, 212.3 bits

XP_004239743 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like from Solanum lycopersicum
Aligns to 30:154 / 211 (59.2%), covers 94.4% of PF04852, 210.7 bits

AT4G18610 LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9) (RefSeq) from Arabidopsis thaliana
Aligns to 21:151 / 191 (68.6%), covers 96.8% of PF04852, 205.7 bits

AT1G16910 LSH8 (LIGHT SENSITIVE HYPOCOTYLS 8) (RefSeq) from Arabidopsis thaliana
Aligns to 11:136 / 164 (76.8%), covers 95.2% of PF04852, 203.5 bits

G1_ORYSJ / Q8GVZ6 Protein G1; Protein ELONGATED EMPTY GLUME from Oryza sativa subsp. japonica (Rice) (see 2 papers)
Aligns to 13:169 / 276 (56.9%), covers 92.9% of PF04852, 192.4 bits

Or search for genetic data about PF04852 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory