Family Search for PF04852 (ALOG_dom)

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Running HMMer for PF04852

PF04852 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing hits to curated sequences only. Or see all hits or try another family.

LSH3_ARATH / O82268 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3; Protein ORGAN BOUNDARY 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
Aligns to 42:167 / 219 (57.5%), covers 96.8% of PF04852, 223.6 bits

• function: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). Required for the maintenance of the shoot apical meristem and for the formation of lateral organs. Promotes petal formation and growth, but may suppress organ differentiation in the boundary region.
  disruption phenotype: No phenotype, probably due to redundant function of paralogs.

G1L6_ORYSJ / Q6K5X1 Protein G1-like6; OsG1L6; Protein ABNORMAL FLOWER AND DWARF 1; Protein BEAK LIKE SPIKELET 1; Protein BEAK-SHAPED GRAIN 1; Protein TRIANGULAR HULL 1 from Oryza sativa subsp. japonica (Rice) (see 6 papers)
Aligns to 69:193 / 248 (50.4%), covers 97.6% of PF04852, 222.4 bits

• function: Transcription factor required for lateral development of the lemma and palea (PubMed:22203474, Ref.9, PubMed:23526395, PubMed:25224972, PubMed:26486996, PubMed:29057928, PubMed:30725309). Involved in the regulation of grain hull development (PubMed:23526395). Possesses transactivation activity in yeast, and may determine grain shape and size by modifying gene expression in the grain hull (PubMed:23526395). Regulates the expression of cell proliferation and expansion related genes (PubMed:26486996). Acts as a transcriptional repressor and regulates cell expansion during the lateral development of spikelet (PubMed:29057928). May act upstream of hormone-related genes and starch and sucrose metabolism-related genes, which may be responsible for lemma and palea development, and grain filling, respectively (PubMed:30725309). Does not seem to function at stages of floral-organ initiation and patterning (Ref.9).
  subunit: Homodimer.
  disruption phenotype: Triangular hull with tortuous lemma and palea (PubMed:22203474, PubMed:29057928). Defects in development of lemma and palea, which have a beak-like form (Ref.9, PubMed:25224972, PubMed:30725309). Beak-shaped grains of decreased width, thickness and weight with a loosely interlocked lemma and palea that are unable to close tightly (PubMed:23526395, PubMed:26486996, PubMed:29057928). Poor grain filling (PubMed:22203474, Ref.9, PubMed:23526395, PubMed:25224972, PubMed:26486996, PubMed:29057928, PubMed:30725309).

LSH4_ARATH / Q9LW68 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4; Protein ORGAN BOUNDARY 4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 33:161 / 195 (66.2%), covers 93.7% of PF04852, 222.1 bits

• function: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). May suppress organ differentiation in the boundary region.

LSH1_ARATH / Q6NNI3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1; Protein ORGAN BOUNDARY 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 13:138 / 190 (66.3%), covers 99.2% of PF04852, 221.5 bits

• function: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to continuous red (cR), far-red (cFR) and blue (cB) light in a phytochrome-dependent manner, at least during seedling development.

G1_ORYSJ / Q8GVZ6 Protein G1; Protein ELONGATED EMPTY GLUME from Oryza sativa subsp. japonica (Rice) (see 2 papers)
Aligns to 12:169 / 276 (57.2%), covers 92.9% of PF04852, 186.3 bits

• function: Probable transcription regulator that acts as a developmental regulator by promoting cell growth in response to light (By similarity). Transcription regulator that restrains empty glumes growth, lemmas of the sterile florets located at the lateral side of the rice spikelet, to maintain their small size, probably by repressing lemma identity via transcription regulation.
  disruption phenotype: Enlarged sterile lemma in florets of the spikelet, caused by homeotic transformation of the sterile lemma into a lemma. Elongated empty glumes, which mimic the lemmas and have the epidermal morphology of lemmas with four or five vascular bundles.

RPP2A_ARATH / F4JT78 Disease resistance protein RPP2A; EC 3.2.2.6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 482:535 / 1309 (4.1%), covers 33.3% of PF04852, 43.5 bits

• function: Disease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2.
  catalytic activity: H2O + NAD(+) = ADP-D-ribose + H(+) + nicotinamide (RHEA:16301)

Or search for genetic data about PF04852 in the Fitness Browser