PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF04884 (DUF647)

PF04884.14 hits 12 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PADG_04473 hypothetical protein from Paracoccidioides brasiliensis Pb18
Aligns to 58:298 / 500 (48.2%), covers 98.8% of PF04884, 359.9 bits

An18g06120 hypothetical protein from Aspergillus niger CBS 513.88
Aligns to 62:303 / 525 (46.1%), covers 98.8% of PF04884, 356.0 bits

RUSF1_DICDI / Q86K80 RUS family member 1 from Dictyostelium discoideum (Slime mold) (see paper)
Aligns to 49:292 / 527 (46.3%), covers 98.8% of PF04884, 328.2 bits

Q499P8 RUS family member 1 from Rattus norvegicus
Aligns to 61:301 / 466 (51.7%), covers 97.1% of PF04884, 316.4 bits

Q96GQ5 RUS family member 1 from Homo sapiens
NP_073581 RUS family member 1 from Homo sapiens
Aligns to 66:303 / 468 (50.9%), covers 95.9% of PF04884, 309.5 bits

AT1G13770 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 43:283 / 440 (54.8%), covers 98.3% of PF04884, 289.2 bits

B4FMW4 Uncharacterized protein from Zea mays
Aligns to 41:279 / 451 (53.0%), covers 98.8% of PF04884, 250.1 bits

RUS1_ARATH / Q7X6P3 Protein root UVB sensitive 1, chloroplastic; Protein WEAK AUXIN RESPONSE 3 from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
AT3G45890 RUS1 (ROOT UVB SENSITIVE 1) (RefSeq) from Arabidopsis thaliana
NP_190175 root UVB sensitive-like protein (Protein of unknown function, DUF647) from Arabidopsis thaliana
Aligns to 185:422 / 608 (39.1%), covers 97.1% of PF04884, 248.6 bits

GRMZM5G833124 uncharacterized protein LOC100278802 from Zea mays
Aligns to 113:346 / 511 (45.8%), covers 97.9% of PF04884, 226.8 bits

RUS2_ARATH / Q9SJX7 Protein root UVB sensitive 2, chloroplastic; Protein WEAK AUXIN RESPONSE 1 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
NP_565718 root UVB sensitive protein (Protein of unknown function, DUF647) from Arabidopsis thaliana
Aligns to 58:294 / 433 (54.7%), covers 97.9% of PF04884, 223.7 bits

RUS6_ARATH / Q93YU2 Protein root UVB sensitive 6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G49820 root UVB sensitive protein (Protein of unknown function, DUF647) from Arabidopsis thaliana
Aligns to 100:333 / 497 (47.1%), covers 96.3% of PF04884, 217.3 bits

AT2G23470 hypothetical protein (RefSeq) from Arabidopsis thaliana
NP_179928 root UVB sensitive protein (Protein of unknown function, DUF647) from Arabidopsis thaliana
Aligns to 109:349 / 520 (46.3%), covers 96.7% of PF04884, 216.8 bits

Or search for genetic data about PF04884 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory