Family Search for PF05077 (DUF678)

PF05077 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DpV83gp120, YP_227495 hypothetical protein from Deerpox virus W-848-83
Aligns to 1:74 / 75 (98.7%), covers 100.0% of PF05077, 130.7 bits

• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...NP_039147), canarypox virus (CNPV258, NP_955281), VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15....”
  • “...canarypox virus (CNPV258, NP_955281), VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15. Statistical...”

NP_938366 111L from Yaba monkey tumor virus
Aligns to 1:73 / 74 (98.6%), covers 100.0% of PF05077, 120.2 bits

• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...(DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15. Statistical Analysis To determine the significance of differences between experimental groups, a ShapiroWilk normality test...”

LSDV111 LSDV111 hypothetical protein from Lumpy skin disease virus NI-2490
Aligns to 1:73 / 74 (98.6%), covers 100.0% of PF05077, 118.1 bits

• Constitutive proteins of lumpy skin disease virion assessed by next-generation proteomics
  Schlosser-Perrin, Journal of virology 2023
  • “...M106L Putative myristylated membrane protein 43,909 21 27 3 35 2.3458 3.2340 5.5797 AOE47684.1 YES LSDV111 A19L M109L Hypothetical protein 8,162 3 3 3 76 0.9802 0.9802 1.9603 AOE47687.1 YES LSDV113 A21L M110L IMV membrane protein 13,550 7 7 4 29 2.1402 3.9852 6.1255 AOE47688.1 YES...”
  • “...VACWR126 A7L C S LSDV098; S VACWR138 A18R C S LSDV110; D VACWR139 A19L D LSDV111; S VACWR144 A24R C S LSDV116; D VACWR152 A29L C S LSDV119; S VACWR171 A45R C S LSDV131; S VACWR183 B1R C S LSDV139; S VACWR191 B9R ND LSDV003; S...”
• Retrospective genomic analysis of the first Lumpy skin disease virus outbreak in China (2019)
  Wei, Frontiers in veterinary science 2022
  • “...100 100 99.5100 99.5100 LSDV110 Putative DNA helicase transcriptional elongation factor 100 100 99.499.6 99.6100 LSDV111 Hypothetical protein 100 100 99.6100 100 LSDV113 IMV membrane protein 100 100 98.3100 100 LSDV113 Putative DNA polymerase processivity factor 100 100 99.5100 99.8100 LSDV114 Hypothetical protein 94.4100 100 93.999.8...”
• Genome of deerpox virus
  Afonso, Journal of virology 2005
  • “...LSDV119 LSDV116 LSDV113 LSDV114 LSDV115 LSDV109 LSDV110 LSDV111 LSDV112 LSDV100 LSDV101 LSDV102 LSDV103 LSDV104 LSDV105 LSDV106 LSDV107 LSDV108 LSDV099 LSDV097...”
• Complete genomic sequence and comparative analysis of the tumorigenic poxvirus Yaba monkey tumor virus
  Brunetti, Journal of virology 2003
  • “...ORF % Identity LSDV109 50 A17L 37 62 81 44 46 LSDV110 LSDV111 LSDV113 LSDV112 57 75 47 51 A18R A19L A21L A20R 55 58 44 46 M112R M113R 60 58 LSDV114 LSDV115 65...”
• The genome of swinepox virus
  Afonso, Journal of virology 2002
  • “...M107L 54 A17L 42 LSDV110 65 110R 63 M108R 61 A18R 57 LSDV111 76 LSDV112 57 111L 113R 72 48 M109L 76 A19L M111R 54 A20R 63 46 L E Continued on following page...”
• Genome of lumpy skin disease virus
  Tulman, Journal of virology 2001
  • “...LSDV104 LSDV105 LSDV106 LSDV107 LSDV108 LSDV109 LSDV110 LSDV111 LSDV112 LSDV113 LSDV114 LSDV115 LSDV116 LSDV117 LSDV118 LSDV119 LSDV120 LSDV121 LSDV122 LSDV123...”

NP_659683 A19 family protein from Sheeppox virus
SPPV_106 hypothetical protein from Sheeppox virus
Aligns to 1:73 / 74 (98.6%), covers 100.0% of PF05077, 112.5 bits

• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15. Statistical Analysis To determine the...”
• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...NP_955281), VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15. Statistical Analysis To determine...”

SPV108 SPV108 hypothetical protein from Swinepox virus
NP_570268 SPV108 hypothetical protein from Swinepox virus
Aligns to 1:71 / 72 (98.6%), covers 100.0% of PF05077, 111.8 bits

• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15. Statistical Analysis To determine the significance of differences...”
• Genome of deerpox virus
  Afonso, Journal of virology 2005
  • “...SPV115 SPV116 SPV113 SPV110 SPV111 SPV112 SPV106 SPV107 SPV108 SPV109 SPV097 SPV098 SPV099 SPV100 SPV101 SPV102 SPV103 SPV104 SPV105 SPV096 SPV094 SPV095 SPV093...”
• Complete genomic sequence and comparative analysis of the tumorigenic poxvirus Yaba monkey tumor virus
  Brunetti, Journal of virology 2003
  • “...111L 112L 113R 839 102 167 668 85 68 71 75 SPV107 SPV108 SPV110 SPV109 61 69 49 48 M108R M109L M110L M111R 114R 115R 259 614 77 80 SPV111 SPV112 66 59 116R 2179...”
• The genome of swinepox virus
  Afonso, Journal of virology 2002
  • “...69 SPV107 100207-101643 (479) LSDV AF325528 1,623 65 SPV108 101845-101630 (72) SPV109 102189-103472 (428) LSDV AF325528 LSDV AF325528 292 1,266 76 57 P23332...”
• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15. Statistical Analysis To determine the significance of differences between...”

P33842 Protein OPG146 from Variola virus (isolate Human/India/Ind3/1967)
Aligns to 1:75 / 76 (98.7%), covers 98.6% of PF05077, 111.7 bits

• The genome of fowlpox virus
  Afonso, Journal of virology 2000
  • “...1,034 52 27 45 43 53 73 429 113 143 381 P33842 U60315 U60315 P33845 P20998 VAR MCV MCV VAR VV FPV189 219326-222808 (1161) 4,855 76 1,156 U60315 MCV FPV190...”

PG146_VACCW / P68714 Protein OPG146 from Vaccinia virus (strain Western Reserve) (VACV) (Vaccinia virus (strain WR)) (see 2 papers)
VACWR139 hypothetical protein from Vaccinia virus
P20994 Protein OPG146 from Vaccinia virus (strain Copenhagen)
CPXV152 CPXV152 protein from Cowpox virus
Aligns to 1:76 / 77 (98.7%), covers 95.9% of PF05077, 110.9 bits

• function: Plays a role in the maturation of immature virions to infectious particles. May also participate in viral transcription.
  subunit: Interacts with capping enzyme RAP94/OPG109, the two large RNA polymerase subunits RPO147/OPG105 and RPO132/OPG151, the two early transcription factor subunits OPG185 and OPG133, one of the capping enzyme subunits OPG113, the nucleoside triphosphate phosphohydrolase OPG123, two core proteins OPG129 and OPG138, and a virion protein OPG064.
• Constitutive proteins of lumpy skin disease virion assessed by next-generation proteomics
  Schlosser-Perrin, Journal of virology 2023
  • “...S LSDV096; D VACWR126 A7L C S LSDV098; S VACWR138 A18R C S LSDV110; D VACWR139 A19L D LSDV111; S VACWR144 A24R C S LSDV116; D VACWR152 A29L C S LSDV119; S VACWR171 A45R C S LSDV131; S VACWR183 B1R C S LSDV139; S VACWR191 B9R...”
• Immunodomination during peripheral vaccinia virus infection
  Lin, PLoS pathogens 2013
  • “...LMYIFAAL K b VACWR086 N2 60 FLMMNKDEL D b VACWR029 A19 47 VSLDYINTM K b VACWR139 gB 498 SSIEFARL K b HSV-1 gB OVA 257 SIINFEKL K b ovalbumin Next we wanted to explore whether this phenomenon was related to the particular selection of epitopes used...”
• The genome of Yoka poxvirus
  Zhao, Journal of virology 2011
  • “...112246-112028 116 112600-112253 68 70 71 VACWR138 (A18R) VACWR139 (A19L) VACWR140 (A21L) 493 77 117 YKV125 YKV126 425 112599-113873 188 113809-114372 72 81...”
• Identification of core therapeutic targets for Monkeypox virus and repurposing potential of drugs against them: An in silico approach
  Sahu, Computers in biology and medicine 2023
  • “...Virion membrane protein A17 precursor, 23kDa late protein A17L 97.45 196 4 1.3E-96 OG070 77 P20994 Zinc finger-like protein, Protein A19 A19L 97.40 77 2 3.5E-51 2DFY_C (42.86, 54) OG071 426 P68709 DNA polymerase processivity factor component A20 A20R 97.18 426 12 0.0E+00 6ZXP_A (96.75, 28)...”
• ISG15 Is Required for the Dissemination of Vaccinia Virus Extracellular Virions
  Bécares, Microbiology spectrum 2023
  • “...and virulence 1 42.96 P21065 Protein A43 A43R Enhancement of intradermal lesion formation 1 31.23 P68714 Protein A19 A19L Maturation of immature virions 1 30.03 a Extracts from IHD-J-V5-ISG15 were immunoprecipitated using an V5 specific antibody and analyzed by LC-ESI-MS/MS. Table3 lists the protein ID, the...”
• Structure-Based Deep Mining Reveals First-Time Annotations for 46 Percent of the Dark Annotation Space of the 9,671-Member Superproteome of the Nucleocytoplasmic Large DNA Viruses
  Mirzakhanyan, Journal of virology 2020 (secret)
• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...indicated viruses are as follows: fowlpox virus (FPV184, NP_039147), canarypox virus (CNPV258, NP_955281), VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus...”
• Generation of a complete single-gene knockout bacterial artificial chromosome library of cowpox virus and identification of its essential genes
  Xu, Journal of virology 2014
  • “...CPXV144 CPXV145 CPXV146 CPXV147 CPXV148 CPXV149 CPXV150 CPXV151 CPXV152 CPXV152A CPXV153 CPXV154 CPXV155 CPXV156 D11L D12L Pseudo? D13L A1L A2L A2.5L A3L A4L...”

NP_039147 ORF FPV184 from Fowlpox virus
FPV184 hypothetical protein from Fowlpox virus
Aligns to 2:86 / 88 (96.6%), covers 98.6% of PF05077, 102.0 bits

• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...Denmark). Protein sequence accession numbers for the indicated viruses are as follows: fowlpox virus (FPV184, NP_039147), canarypox virus (CNPV258, NP_955281), VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366),...”
• Modulation of early host innate immune response by a Fowlpox virus (FWPV) lateral body protein
  Giotis, 2020
• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...gene expression in cells infected with 59 different, nonessential FWPV gene knockout mutants revealed that FPV184 confers immunomodulatory capacity. We report that the FPV184 -knockout virus (FWPV184) induces the cellular IFN response as early as 2 h postinfection. The wild-type, uninduced phenotype can be rescued by...”
  • “...of the chicken Mx1 promoter. Confocal and correlative super-resolution light and electron microscopy demonstrated that FPV184 has a functional nuclear localisation signal domain and is packaged in the lateral bodies of the virions. Taken together, these results provide a paradigm for a late poxvirus structural protein...”
• Chicken cGAS Senses Fowlpox Virus Infection and Regulates Macrophage Effector Functions
  Oliveira, Frontiers in immunology 2020
  • “...Fowlpox Virus Growth and Titration Fowlpox WT (FP9) and mutants [FPV012 ( 19 ) and FPV184 ( 20 )] were propagated in primary chicken embryonic fibroblasts (CEFs) and grown in DMEM-F12 (Thermo Fisher Scientific, Waltham, MA, USA) containing 1% FBS and 5% P/S, and harvested 5...”
  • “...a virus that stimulates host IFN-I signaling. We made use of FWPV mutants FPV012 and FPV184 ( 19 , 20 ), each deficient in single genes that are proposed immunomodulators, and both of which induce IFN-I production from infected cells ( 19 ), including HD11 cells...”
• The genome of canarypox virus
  Tulman, Journal of virology 2004
  • “...A18R CNPV258 CNPV259 288447-288181 (89) 288792-290093 (434) FPV184 (88) FPV185 (433) 67 64 A19L A20R CNPV260 CNPV261 CNPV262 288793-288458 (112) 290093-290548...”
• The genome of fowlpox virus
  Afonso, Journal of virology 2000
  • “...179 P16711 VV FPV183 214396-215781 (462) 1,269 53 458 U60315 MCV FPV184 FPV185 FPV186 FPV187 FPV188 159 489 255 318 1,034 52 27 45 43 53 73 429 113 143 381...”

NP_957873 ORF096 hypothetical protein from Orf virus
Aligns to 19:89 / 90 (78.9%), covers 98.6% of PF05077, 94.6 bits

• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124, AQY16697), orf virus (ORF096, NP_957873), and crocodilepox virus (P4b, YP_784314). 2.15. Statistical Analysis To determine the significance of differences between experimental groups, a ShapiroWilk normality test was initially used to confirm whether the data followed...”

NP_955281 CNPV258 conserved hypothetical protein from Canarypox virus
CNPV258 hypothetical protein from Canarypox virus
Aligns to 4:87 / 89 (94.4%), covers 97.3% of PF05077, 81.3 bits

• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...numbers for the indicated viruses are as follows: fowlpox virus (FPV184, NP_039147), canarypox virus (CNPV258, NP_955281), VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus (MC124,...”
• Modulation of Early Host Innate Immune Response by an Avipox Vaccine Virus' Lateral Body Protein
  Giotis, Biomedicines 2020
  • “...accession numbers for the indicated viruses are as follows: fowlpox virus (FPV184, NP_039147), canarypox virus (CNPV258, NP_955281), VACV (A19, P68714), myxoma Virus (m109 L, AQT34599), deerpox virus (DpV83gp120, YP_227495), sheeppox virus (SPPV_106, NP_659683), swinepox virus (SPV108, NP_570268), Yaba monkey tumor virus (111L, NP_938366), molluscum contagiosum virus...”
• Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.)
  Sarker, BMC genomics 2017
  • “...SWPV1-230 SWPV2-243 CNPV257 CNPV257 DNA helicase, transcriptional elongation 87.229 99.784 462 462 462 SWPV1-231 SWPV2-244 CNPV258 CNPV258 conserved hypothetical protein 77.647 100 86 89 89 SWPV1-232 SWPV2-245 CNPV259 CNPV259 DNA polymerase processivity factor 81.86 100 432 112 434 SWPV1-233 SWPV2-246 CNPV260 CNPV260 conserved hypothetical protein 91.071...”
• The genome of canarypox virus
  Tulman, Journal of virology 2004
  • “...A12L CNPV257 286822-288207 (462) FPV183 (462) 82 A18R CNPV258 CNPV259 288447-288181 (89) 288792-290093 (434) FPV184 (88) FPV185 (433) 67 64 A19L A20R CNPV260...”

Or search for genetic data about PF05077 in the Fitness Browser