Family Search for PF05078 (DUF679)

PF05078 hits 16 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DMP4_ARATH / Q8L928 Protein DMP4; AtDMP4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G18425 hypothetical protein from Arabidopsis thaliana
Aligns to 46:208 / 213 (76.5%), covers 99.4% of PF05078, 234.5 bits

• function: Involved in membrane remodeling.
• Endosperm cell death promoted by NAC transcription factors facilitates embryo invasion in Arabidopsis
  Doll, Current biology : CB 2023
  • “...ANAC087 (AT5G18270), ANAC092 (AT5G39610), PASPA3 (AT4G04460), BFN1 (AT1G11190), CEP1 (AT5G50260), SCPL48 (AT3G45010), RNS3 (AT1G26820), DMP4 (AT4G18425), EXI1 (AT2G14095), MC9 (AT5G04200), CAN1 (AT3G56170), TE2 (AT2G27380) and EE (AT5G09370) . Confocal observation Before confocal observation, developing seeds were cut by a vibratome device. First, the two valves of...”
• KIL1 terminates fertility in maize by controlling silk senescence
  Šim, The Plant cell 2022
  • “...2.79 5.59 ZmRNS3b GRMZM2G141322 Zm00001eb328300 At1g26820 ( RNS3 ) 7.23 4.06 5.47 ZmDMP4a GRMZM5G812126 Zm00001eb383510 At4g18425 ( DMP4 ) 4.57 4.38 7.28 ZmDMP4b GRMZM2G070013 Zm00001eb343640 At4g18425 ( DMP4 ) 3.91 1.79 6.05 ZmEXI1 GRMZM2G167584 Zm00001eb027840 At2g14095 (EXI1) 4.04 3.26 3.91 ZmSCPL48 GRMZM2G020146 Zm00001eb229790 At3g45010 ( SCPL48...”
• Temporal analysis of Arabidopsis genes activated by Eucalyptus grandis NAC transcription factors associated with xylem fibre and vessel development
  Laubscher, Scientific reports 2018
  • “...Function (DUF239) 242.1 295.1 651.0 453.4 AT4G09990 Protein of Unknown Function (DUF579) 8.6 8.1 113.8 AT4G18425 Protein of Unknown Function (DUF679) Inf* Inf* AT1G43790 TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6 (TED6) 432.0 624.6 AT5G48920 TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7 (TED7) 18.2 *Inf refers to instances where the FPKM was...”
• KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis
  Gao, Nature plants 2018
  • “...of mentioned genes are ORE1 (AT5G39610), KIR1 (AT4G28530), CEP1 (AT5G50260), BFN1 (AT1G11190), RNS3 (AT1G26820), DMP4 (AT4G18425), EXI1 (AT2G14095), PASPA3 (AT4G04460), and SCPL48 (AT3G45010). Plants were grown on Jeffy-7 in plant growth chambers at 16-h light/ 8-h dark cycles at 20-22C. Seedlings were grown vertically on MS...”
• Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis
  Zheng, PLoS genetics 2010
  • “...between At2g20410 and At2g20420 . (M) A Chr. 4 intergenic dsRNA hotspot between At4g18422 and At4g18425 . (NP) Random-primed RT-PCR analysis of the novel, base-paired RNAs that are pictured in (KM) using five different Arabidopsis tissues (leaf blades, leaf petioles, cauline leaves, stems, and unopened flower...”

DMP6_ARATH / Q9FNL3 Protein DMP6; AtDMP6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 47:209 / 214 (76.2%), covers 99.4% of PF05078, 232.6 bits

• function: Involved in membrane remodeling.

DMP3_ARATH / Q9STW3 Protein DMP3; AtDMP3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G24310 hypothetical protein from Arabidopsis thaliana
Aligns to 40:204 / 213 (77.5%), covers 99.4% of PF05078, 228.0 bits

• function: Involved in membrane remodeling.
• An S-adenosyl Methionine Synthetase (SAMS) Gene from Andropogon virginicus L. Confers Aluminum Stress Tolerance and Facilitates Epigenetic Gene Regulation in Arabidopsis thaliana
  Ezaki, Frontiers in plant science 2016
  • “...~+407 At4gl8940 RNA ligase/cyclic nucleotide phosphodiesterase family protein 1.08 0.07 * R ME +57 ~+452 At4g24310 Uncharacterized protein 0.39 * 0.16 * R ME 172 ~+82 At4g33070 Pyruvate decarboxylase 1.01 * 5.84 * I non-ME +1 ~+120 At5g07390 (site 1) Respiratory burst oxidase homolog A (RBOHA)...”

DMP5_ARATH / Q9M897 Protein DMP5; AtDMP5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G02430 hypothetical protein from Arabidopsis thaliana
Aligns to 46:210 / 219 (75.3%), covers 99.4% of PF05078, 224.8 bits

• function: Involved in membrane remodeling.
• Chlorophyll breakdown: pheophorbide a oxygenase is a Rieske-type iron-sulfur protein, encoded by the accelerated cell death 1 gene
  Pruzinská, Proceedings of the National Academy of Sciences of the United States of America 2003
  • “...At1g79760 At2g07370 At2g26920 At2g40390 At2g45870 At3g02430 At3g27180 At3g44880 At3g61320 At4g24860 At4g25650 At5g27010 At5g35570 At5g42660 At5g63390 At5g64710...”

DMP7_ARATH / Q5XV67 Protein DMP7; AtDMP7 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 32:195 / 200 (82.0%), covers 98.8% of PF05078, 224.0 bits

• function: Involved in membrane remodeling.

XP_015895121 protein DMP9-like from Ziziphus jujuba
Aligns to 55:217 / 220 (74.1%), covers 99.4% of PF05078, 220.5 bits

• Presence of p25alpha-Domain in Seed Plants (Spermatophyta): Microbial/Animal Contaminations and/or Orthologs
  Orosz, Life (Basel, Switzerland) 2023
  • “...% GEIC01019180 KAH7131324 Dactylonectria macrodidyma Ascomycota 72 86.84 KFY33973 Pseudogymnoascus sp. Ascomycota 73 61.84 GEIC01019179 XP_015895121 Ziziphus jujuba Streptophyta 95 78.67 GEIC01019178 KAJ3085108 Quaeritorhiza haematococci Chytridiomycota 76 49.74 KAJ3185965 Gaertneriomyces sp. Chytridiomycota 99 42.13 GEIC01019177 KAJ3085108 Quaeritorhiza haematococci Chytridiomycota 82 49.74 KAJ3031848 Rhizophlyctis rosea Chytridiomycota 91...”

A2YP92 Uncharacterized protein from Oryza sativa subsp. indica
Aligns to 43:211 / 224 (75.4%), covers 99.4% of PF05078, 214.0 bits

• Nitrogen Fertilizer Induced Alterations in The Root Proteome of Two Rice Cultivars
  Tang, International journal of molecular sciences 2019
  • “...channel KAT2 isoform X1 OsI_00861 0.486 0.783 B8BBQ9 dipeptide transport ATP-binding protein OsI_28206 0.445 0.747 A2YP92 "transmembrane protein, putative OsI_27085 0.432 1.146 A2YVV8 putative copper transporter 5.2 OsI_29464 0.474 0.892 A2YML7 sugar carrier protein C OsI_26468 1.572 2.925 B8ACJ8 calmodulin-like protein OsI_01318 1.446 5.881 Note: In...”

DMP9_ARATH / Q9FK96 Protein DMP9; AtDMP9; Protein DUO1-ACTIVATED UNKNOWN 2 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT5G39650 hypothetical protein from Arabidopsis thaliana
NP_198781 transmembrane protein, putative (DUF679) from Arabidopsis thaliana
Aligns to 67:241 / 244 (71.7%), covers 99.4% of PF05078, 213.8 bits

• function: Involved in membrane remodeling.
• Behavior of Male Gamete Fusogen GCS1/HAP2 and the Regulation in Arabidopsis Double Fertilization
  Shiba, Biomolecules 2023
  • “...). 2.4. Production of the dmp8dmp9 HTR10mRFP Plant The 109131 bp region in the DMP9 (At5g39650) ORF was selected as the target sequence for genome editing by CRISPR/Cas9 and cloned into the binary vector, pKI1.1R [ 35 ]. The constructed T-DNA region was introduced into HTR10mRFP...”
• Endosperm development is an autonomously programmed process independent of embryogenesis
  Xiong, The Plant cell 2021 (PubMed)
  • “...this article are as follows: At1g09157 (DMP8), At5g39650 (DMP9), AT5G49150 (GEX2), At2g06090 (DD19), At5g38330 (DD22), At5g48670 (AGL80), AT5G60440 (AGL62),...”
• A DMP-triggered in vivo maternal haploid induction system in the dicotyledonous Arabidopsis
  Zhong, Nature plants 2020 (PubMed)
  • “...encodes ten DMP-like proteins9,21. AtDMP8 (AT1G09157) and AtDMP9 (AT5G39650) are most similar to ZmDMP (61% amino acid sequence identity), whereas the other...”
• The beta Subunit of Nascent Polypeptide Associated Complex Plays A Role in Flowers and Siliques Development of Arabidopsis thaliana
  Fíla, International journal of molecular sciences 2020
  • “...CYCB1 accumulation during G2 phase [ 61 ]. Among its targets, there was downregulated DMP9/DAU2 (At5g39650), which is responsible for double fertilization and its silencing leads to seed abortion [ 62 ]. Last but not least, three zinc finger transcription factors DAZ1 (At2g17180), DAZ2 (At4g35280), DAZ3...”
• Gamete fusion is facilitated by two sperm cell-expressed DUF679 membrane proteins
  Cyprys, Nature plants 2019 (PubMed)
  • “...(DMP5), At5g46090 (DMP6), At4g28485 (DMP7), At1g09157 (DMP8), At5g39650 (DMP9), At5g27370 (DMP10) and At3g53750 (ACT3) as a control (Supplementary Table 3)....”
• Ectopic RING zinc finger gene from hot pepper induces totally different genes in lettuce and tobacco
  Kesawat, Molecular breeding : new strategies in plant improvement 2018
  • “...(tsg101) family protein 3.21 At1g70490 ADP-ribosylation factor 6.88 At1g13740 ABI five binding protein 2 5.80 At5g39650 DUO1-activated unknown 2 (DUO2) 2.03 At5g10430 Arabinogalactan-protein (agp4) 4.42 At5g64310 Arabinogalactan-protein (agp1) 2.52 At4g37450 Arabinogalactan-protein (agp18) 3.50 At2g46330 Arabinogalactan-protein (agp16) 2.87 At5g49080 Proline-rich extensin-like family protein 2.18 At3g49300 Proline-rich family...”
• Suppression of ASKβ (AtSK32), a Clade III Arabidopsis GSK3, Leads to the Pollen Defect during Late Pollen Development
  Dong, Molecules and cells 2015
  • “...trichomes, pollen, and root Displayed an enhanced nutritional induced pollen abnormalities Sancenon et al. (2004) At5g39650 0.8670 DAU2 Pollen sperm cells - Borg et al. (2011) At5g23670 0.8490 LCB2 Ubiquitously expressed in Arabidopsis Pollen contained aberrant endomembrane and lacked an intine layer Dietrich et al. (2008)...”
• Gamete fusion is facilitated by two sperm cell-expressed DUF679 membrane proteins.
  Cyprys, Nature plants 2019 (PubMed)
  • GeneRIF: At5g39650 (DMP9) facilitates gamete fusion.

GRMZM5G812126 uncharacterized protein LOC100278708 from Zea mays
Aligns to 87:249 / 254 (64.2%), covers 99.4% of PF05078, 213.2 bits

• KIL1 terminates fertility in maize by controlling silk senescence
  Šim, The Plant cell 2022
  • “...) 3.44 2.79 5.59 ZmRNS3b GRMZM2G141322 Zm00001eb328300 At1g26820 ( RNS3 ) 7.23 4.06 5.47 ZmDMP4a GRMZM5G812126 Zm00001eb383510 At4g18425 ( DMP4 ) 4.57 4.38 7.28 ZmDMP4b GRMZM2G070013 Zm00001eb343640 At4g18425 ( DMP4 ) 3.91 1.79 6.05 ZmEXI1 GRMZM2G167584 Zm00001eb027840 At2g14095 (EXI1) 4.04 3.26 3.91 ZmSCPL48 GRMZM2G020146 Zm00001eb229790 At3g45010...”

DMP8_ARATH / O80493 Protein DMP8; AtDMP8 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_001031010 transmembrane protein, putative (DUF679) from Arabidopsis thaliana
AT1G09157 hypothetical protein from Arabidopsis thaliana
Aligns to 66:240 / 243 (72.0%), covers 99.4% of PF05078, 212.0 bits

• function: Involved in membrane remodeling.
• Gamete fusion is facilitated by two sperm cell-expressed DUF679 membrane proteins.
  Cyprys, Nature plants 2019 (PubMed)
  • GeneRIF: At1g09157 (DMP8) facilitates gamete fusion.
• Endosperm development is an autonomously programmed process independent of embryogenesis
  Xiong, The Plant cell 2021 (PubMed)
  • “...mentioned in this article are as follows: At1g09157 (DMP8), At5g39650 (DMP9), AT5G49150 (GEX2), At2g06090 (DD19), At5g38330 (DD22), At5g48670 (AGL80), AT5G60440...”
• A DMP-triggered in vivo maternal haploid induction system in the dicotyledonous Arabidopsis
  Zhong, Nature plants 2020 (PubMed)
  • “...Arabidopsis genome encodes ten DMP-like proteins9,21. AtDMP8 (AT1G09157) and AtDMP9 (AT5G39650) are most similar to ZmDMP (61% amino acid sequence identity),...”
• Gamete fusion is facilitated by two sperm cell-expressed DUF679 membrane proteins
  Cyprys, Nature plants 2019 (PubMed)
  • “...(DMP4), At3g02430 (DMP5), At5g46090 (DMP6), At4g28485 (DMP7), At1g09157 (DMP8), At5g39650 (DMP9), At5g27370 (DMP10) and At3g53750 (ACT3) as a control...”

LOC4325227 protein DMP10 from Oryza sativa Japonica Group
Aligns to 74:242 / 264 (64.0%), covers 99.4% of PF05078, 208.6 bits

• Identification and characterization of genes frequently responsive to Xanthomonas oryzae pv. oryzae and Magnaporthe oryzae infections in rice
  Kong, BMC genomics 2020
  • “...infection Gene ID Annotation Number of sample infected by Xoo ( n =6) Os01g0389200 uncharacterized LOC4325227 6 Os01g0584900 WRKY transcription factor SUSIBA2 6 Os01g0695800 ABC transporter B family member 11 6 Os01g0713200 glucan endo-1,3-beta-glucosidase GII 6 Os01g0963000 cationic peroxidase SPC4 6 Os02g0569900 Cytochrome P450 family protein...”

GRMZM2G465053 uncharacterized protein LOC100277972 from Zea mays
Aligns to 40:202 / 205 (79.5%), covers 99.4% of PF05078, 206.9 bits

• MYO, a Candidate Gene for Haploid Induction in Maize Causes Male Sterility
  Vanous, Plants (Basel, Switzerland) 2020
  • “...haploid induction rate by an average of 0.6% in the presence of qhir1 . Recently, GRMZM2G465053 ( ZmDMP ) was identified by map-based gene isolation and shown to be responsible for qhir8 . While our results suggest that MYO may contribute to haploid induction rate, results...”
  • “...narrowed the fine-mapping region from 789 kb to 138 kb. Within this region, the gene GRMZM2G465053 ( ZmDMP ) was a strong candidate and expressed during late maturity of pollen grains. By knocking out this gene, HIR was increased 56-fold in the presence of qhir1, thereby...”
• Breeding Maize Maternal Haploid Inducers
  Uliana, Plants (Basel, Switzerland) 2020
  • “...with mtl / zmpla1 / nld [ 12 ]. It was recently reported that gene GRMZM2G465053 (named ZmDMP ), which encodes for a DUF679 domain membrane protein, is the underlying causative allele of qhir8 [ 13 ]. ZmDMP has the same subcellular localization and expression pattern...”

DMP2_ARATH / Q9LVF1 Protein DMP2; AtDMP2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT3G21550 hypothetical protein from Arabidopsis thaliana
Aligns to 14:171 / 184 (85.9%), covers 98.8% of PF05078, 206.7 bits

• function: Involved in membrane remodeling.
• Comparing RNA-Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflight
  Krishnamurthy, Applications in plant sciences 2018
  • “...5.29 NM_126080 . Arabidopsis thaliana CTERMINALLY ENCODED PEPTIDE 5, CEP5 transmembrane protein(AT5G66815) mRNA, complete cds. AT3G21550 7.51 3.09 NM_113050 . Arabidopsis thaliana DUF679 DOMAIN MEMBRANE PROTEIN 2, ATDMP2, DMP2, DUF679 DOMAIN MEMBRANE PROTEIN 2 (AT3G21550) mRNA, complete cds. AT3G10340 7.40 5.17 NM_111869 . Arabidopsis thaliana PAL4...”
• Identification and functional analysis of light-responsive unique genes and gene family members in rice
  Jung, PLoS genetics 2008
  • “...predominantly expressed gene family member in the red light whereas 13 genes (except two genes; At3g21550 and At3g21330 whose gene expression profiling data was not available) were either unique sequences or the predominantly expressed gene family member in the light ( Figure S6 ). Thus, this...”

DMP1_ARATH / Q9LVF4 Protein DMP1; AtDMP1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_188789 transmembrane protein, putative (DUF679 domain membrane protein 1) from Arabidopsis thaliana
AT3G21520 hypothetical protein from Arabidopsis thaliana
Aligns to 28:187 / 207 (77.3%), covers 98.8% of PF05078, 194.4 bits

• function: Involved in membrane remodeling including fission during breakdown of the endoplasmic reticulum (ER) and the tonoplast during leaf senescence and in membrane fusion during vacuole biogenesis in roots.
• Arabidopsis senescence-associated protein DMP1 is involved in membrane remodeling of the ER and tonoplast.
  Kasaras, BMC plant biology 2012
  • GeneRIF: DMP1 is directly or indirectly involved in membrane fission during breakdown of the endoplasmic reticulum (ER) and the tonoplast during leaf senescence and in membrane fusion during vacuole biogenesis in roots.
• Investigation of P1/HC-Pro-Mediated ABA/Calcium Signaling Responses via Gene Silencing through High- and Low-Throughput RNA-seq Approaches
  Chiu, Viruses 2021
  • “...DUF584 senescence AT1G55740 SIP1 Seed imbibition 1 senescence AT4G01250 WRKY22 WRKY family transcription factor senescence AT3G21520 DMP1 DUF679 domain membrane protein 1 senescence/cell death AT1G52890 ANAC019/NAC019 NAC domain containing protein 19 senescence/chloroplast degradation AT1G69490 ANAC029/NAP NAC-like, activated by AP3/PI senescence/chloroplast degradation AT4G24390 AFB4 RNI-like superfamily protein...”
• Transcriptomic Analysis of Soil-Grown Arabidopsis thaliana Roots and Shoots in Response to a Drought Stress
  Rasheed, Frontiers in plant science 2016
  • “...1.1 1.2 At5g66400 DI8/RAB18/RESPONSIVE to ABA 18 4.2 79.7 157.6 316.7 3.4 19.1 334.6 825.6 At3g21520 DUF679 domain membrane protein 1 4.3 1.4 2.0 1.5 1.5 0.8 1.0 1.4 At1g26390 FAD-binding Berberine family protein 12.9 2.2 1.1 1.4 0.7 0.2 0.1 0.1 At1g26410 FAD-binding Berberine family...”
• ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana
  Balazadeh, Molecular plant 2011
  • “...(TAIR:AT1G49500.1) 3.24 1.70 256933_at AT3G22600 * Protease inhibitor/seed storage/lipid transfer protein (LTP) 2.11 1.83 257540_at AT3G21520 * Similar to unknown protein ( Arabidopsis thaliana ) (TAIR:AT3G21550.1) 1.61 2.37 257774_at AT3G29250 * # Oxidoreductase 2.25 2.82 258203_at AT3G13950 * Similar to unknown protein ( Arabidopsis thaliana )...”

DMP10_ARATH / Q3E912 Protein DMP10; AtDMP10 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 10:187 / 191 (93.2%), covers 98.8% of PF05078, 181.3 bits

• function: Involved in membrane remodeling.

AT4G28485 hypothetical protein from Arabidopsis thaliana
Aligns to 57:160 / 165 (63.0%), covers 60.7% of PF05078, 123.2 bits

• Natural variation identifies multiple loci controlling petal shape and size in Arabidopsis thaliana
  Abraham, PloS one 2013
  • “...Decrease AT4G29490 AT4G17870 AT4G35080 2640 AG, ULT1, LEUNIG CE-L2 Length 4 6.39 19 Decrease AT4G29658 AT4G28485 AT4G30590 354 ULT1 CE-A1 Area 4 4.6 14 Decrease AT4G29658 AT4G25640 AT4G34390 1342 ULT1, LEUNIG CE-W1 Width 4 4.55 14 Decrease AT4G30590 AT4G29658 AT4G34390 737 LEUNIG CE-W2 Width 4 4.5...”

Or search for genetic data about PF05078 in the Fitness Browser