Family Search for PF05142 (DUF702)
PF05142 hits 17 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
EOT1_SOLLC / K4B6C9 Protein EXPRESSION OF TERPENOIDS 1; SlEOT1 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see 2 papers)
Aligns to 125:274 / 351 (42.7%), covers 98.7% of PF05142, 219.5 bits
- function: Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24142382, PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24142382, PubMed:24884371). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371).
subunit: Forms homodimers and heterodimers with LRP1.
SHI1_ORYSJ / Q652K4 Protein SHORT INTERNODES 1; OsSHI1 from Oryza sativa subsp. japonica (Rice) (see paper)
Aligns to 93:243 / 315 (47.9%), covers 98.7% of PF05142, 217.7 bits
- function: Regulates tillering and panicle branching by modulating SPL14/IPA1 transcriptional activity on the downstream TB1 and DEP1 target genes (PubMed:30914468). Binds directly to the 5'-T/GCTCTAC-3' DNA motif found in the promoter regions of both TB1 and DEP1 (PubMed:30914468). Represses the DNA binding activity of SPL14/IPA1 toward the promoters of both TB1 and DEP1 (PubMed:30914468). Exhibits weak transcriptional activation activity in yeast cells (PubMed:30914468).
subunit: Forms homodimers (via C-terminus) (PubMed:30914468). Interacts with SPL14/IPA1 (via C-terminus) (PubMed:30914468).
disruption phenotype: Significant reduced tiller number, enhanced culm strength, increased panicle branch numbers and reduced grain size.
XP_008656860 protein LATERAL ROOT PRIMORDIUM 1 from Zea mays
Aligns to 122:290 / 360 (46.9%), covers 98.7% of PF05142, 215.7 bits
- Genome-wide investigation of maize RAD51 binding affinity through phage display
Milsted, BMC genomics 2022 - “...40-like NP_001348908 18 7 Prolyl-tRNA synthetase, NP_001149927 19 8 LRP1 - lateral root primordia 1, XP_008656860 20 8 DUF455 family protein, ONM28467 25 9 Suspected annotation error 30 11 Two bHLH transcription factors: transcription factor MYC2 XP_020402137 and uncharacterized protein NP_001168647 31 11 Ten Elongation factor...”
SRS1_ARATH / Q9SD40 Protein SHI RELATED SEQUENCE 1; Protein STYLISH 1 from Arabidopsis thaliana (Mouse-ear cress) (see 7 papers)
AT3G51060 STY1 (STYLISH 1); protein heterodimerization/ transcription factor from Arabidopsis thaliana
NP_190675 Lateral root primordium (LRP) protein-like protein from Arabidopsis thaliana
Aligns to 140:287 / 370 (40.0%), covers 98.0% of PF05142, 215.6 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM).
subunit: Forms homodimers and heterodimers with LRP1
disruption phenotype: Gynoecia with aberrant style morphology. The double mutant sty1-1 and sty2-1 has a reduction in the amount of stylar and stigmatic tissues and decreased proliferation of stylar xylem, as well as shorter siliques and rosette and cauline leaves with a higher degree of serration. Hypersensitive to 1-N-naphthylphtalamic acid (NPA), but restored by exogenous application of auxin. - HISTONE DEACETYLASE19 Controls Ovule Number Determination and Transmitting Tract Differentiation
Manrique, Plant physiology 2024 - “...PO:0020003 FIL Gramene: AT2G45190 FIL Araport: AT2G45190 PHB Gramene: AT2G34710 PHB Araport: AT2G34710 STY1 Gramene: AT3G51060 STY1 Araport: AT3G51060 SPT Gramene: AT4G36930 SPT Araport: AT4G36930 YAB3 Gramene: AT4G00180 YAB3 Araport: AT4G00180 NGA4 Gramene: AT4G01500 NGA4 Araport: AT4G01500 PAN Gramene: AT1G68640 PAN Araport: AT1G68640 CUC1 Gramene: AT3G15170...”
- Discovering New QTNs and Candidate Genes Associated with Rice-Grain-Related Traits within a Collection of Northeast Core Set and Rice Landraces
Roy, Plants (Basel, Switzerland) 2024 - “...LOC_Os05g40790.1 Chr5 2391637223923564 CCR4-NOT transcription factor Seed, Inflorescence AT1G07705 LOC_Os08g43410.1 Chr8 2745993427458307 LRP1 Seed, Inflorescence AT3G51060 LOC_Os08g43430.1 Chr8 2747504227473382 CXE carboxylesterase Seed, Inflorescence AT2G45600 LOC_Os08g43440.1 Chr8 2748116827479061 cytochrome P450 Seed, Inflorescence AT4G12320 LOC_Os08g43450.1 Chr8 2748879827486168 MYB-like protein 1 ** ** LOC_Os08g43470.1 Chr8 2749719027501389 ER lumen protein...”
- Identification of the Key Regulatory Genes Involved in Elaborate Petal Development and Specialized Character Formation in Nigella damascena (Ranunculaceae)
Zhang, The Plant cell 2020 - “...to the work described in this paper: PAP1 Gramene: AT3G16500 PAP1 Araport: AT3G16500 STY1 Gramene: AT3G51060 STY1 Araport: AT3G51060 TT8 Gramene: AT4G09820 TT8 Araport: AT4G09820 YAB2 Gramene: AT1G08465 YAB2 Araport: AT1G08465 Fls Gramene: AT5G08640 Fls Araport: AT5G08640 gl3 Gramene: AT5G41315 gl3 Araport: AT5G41315 GRF3 Gramene: At2g36400...”
- An integrated analysis of cell-type specific gene expression reveals genes regulated by REVOLUTA and KANADI1 in the Arabidopsis shoot apical meristem
Ram, PLoS genetics 2020 - “...organ formation such as, YABBY1 / FIL ( AT2G45190 ), ANT-LIKE 6 (AT5G10510), STYLISH1 ( AT3G51060 ), STYLISH2 ( AT4G36260 ), SHI ( AT5G66350 ), ROXY1 ( AT3G02000 ), BOP1 ( AT3G57130 ), BOP2 ( AT2G41370 ), DRNL ( AT1G24590 ), MONOPTEROS ( AT1G19850 ), ZPR3...”
- The Arabidopsis phytohormone crosstalk network involves a consecutive metabolic route and circular control units of transcription factors that regulate enzyme-encoding genes
Yue, BMC systems biology 2016 - “...dioxygenase (EC 1.13.11.51) NCED9 (AT1G78390). A circular control unit, including PIL5 (AT2G20180), ARF8 (AT5G37020), STY1 (AT3G51060), ARF17 (AT1G77850), and ARF7 (AT5G20730), regulates genes encoding the IAA-amido synthetases (EC 6.3.-.-) GH3.5 (AT4G27260) and GH3.17 (AT1G28130), and NCED9 (EC 1.13.11.51) (AT1G78390). A circular control unit, including TCP1 (AT1G67260),...”
- “...(AT1G28300), MYC2 (AT1G32640), GL3 (AT5G41315), ARF8 (AT5G37020), ARF7 (AT5G20730), HY5 (AT5G11260), EGL3 (AT1G63650), and STY1 (AT3G51060) (see Additional file 3 , section III for details). Downstream TFs in phytohormone signal transduction pathways are involved in the circular control units that regulate enzyme-encoding genes in the EAPCN...”
- The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
Frerichs, BMC genomics 2016 - “...GIBBERELLIN 2-OXIDASE2 GA2ox2 At1g30040 +1.58 Other transcription factors SHI-RELATED SEQUENCE4 SRS4 At2g18120 +3.61 STYLISH1 STY1 At3g51060 +2.74 SHI-RELATED SEQUENCE7 SRS7 At1g19790 +2.21 INFLORESCENCE DEFICIENT IN ABSCISSION ( IDA )- LIKE 2 IDL2 At5g64667 +1.93 SHORT INTERNODES SHI At5g66350 +1.92 MiRNAs and the siRNA precursor TAS3A TAS3A...”
- Auxin biosynthesis
Zhao, The arabidopsis book 2014 - “...The SHORT INTENOTES/STYLISH (SHI/STY) (SHI: AT5G66350; STY1: AT3G51060) family of transcription factors plays an important role in leaf and flower development...”
- De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)
Logacheva, BMC genomics 2011 - “...Fagopyrum_tataricum_MIRA_VER3_c12724 BLR AT5G02030 Fagopyrum_tataricum_MIRA_VER3_c2133 STK AT4G09960 Fagopyrum_tataricum_MIRA_VER3_c6138 DICER-LIKE1 AT1G01040 Fagopyrum_tataricum_MIRA_VER3_c24560 SPATULA AT4G36930 Fagopyrum_esculentum_MIRA_VER3_c7255 Fagopyrum_tataricum_MIRA_VER3_c22310 STY1 AT3G51060 Fagopyrum_esculentum_MIRA_VER3_c19680 Fagopyrum_tataricum_MIRA_VER3_c6938 STY2 AT4G36260 BIG BROTHER AT3G63530 Fagopyrum_esculentum_MIRA_VER3_c12106 Fagopyrum_tataricum_MIRA_VER3_c5454 HWS AT3G61590 Fagopyrum_esculentum_MIRA_VER3_c12481 Since this type of search is not able to detect duplications, we performed a manual inspection of the...”
- The Arabidopsis thaliana transcriptional activator STYLISH1 regulates genes affecting stamen development, cell expansion and timing of flowering.
Ståldal, Plant molecular biology 2012 (PubMed)- GeneRIF: STY1 induces the transcription of 16 additional genes independently of protein translation.
- Expression of Arabidopsis SHORT INTERNODES/STYLISH family genes in auxin biosynthesis zones of aerial organs is dependent on a GCC box-like regulatory element.
Eklund, Plant physiology 2011 - GeneRIF: Induction of the transcriptional activator DORNROSCHEN-LIKE (DRNL) activates the transcription of STY1 and other SHI/STY family members and that this activation is dependent on a functional GCC box.
- Auxin can act independently of CRC, LUG, SEU, SPT and STY1 in style development but not apical-basal patterning of the Arabidopsis gynoecium.
Ståldal, The New phytologist 2008 (PubMed)- GeneRIF: results suggest that reduced auxin concentrations cause the sty1-1 sty2-1 phenotype, that STY1 induces auxin biosynthesis
- STY1 regulates auxin homeostasis and affects apical-basal patterning of the Arabidopsis gynoecium.
Sohlberg, The Plant journal : for cell and molecular biology 2006 (PubMed)- GeneRIF: STY1 and related genes promote normal development of the style and affect apical-basal patterning of the gynoecium through regulation of auxin homeostasis.
SHI_ARATH / Q9XGX0 Protein SHORT INTERNODES from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT5G66350 SHI (SHORT INTERNODES); protein binding / protein heterodimerization/ transcription factor from Arabidopsis thaliana
Aligns to 116:263 / 331 (44.7%), covers 98.7% of PF05142, 214.2 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction.
subunit: Forms a heterodimer with LRP1
disruption phenotype: High gibberellin (GA) levels associated with dwarfism, short hypocotyl, narrow leaves, reduced apical dominance, and late flowering, but more flowers. - Genome-wide association mapping of iron homeostasis in the maize association population
Benke, BMC genetics 2015 - “...1.91 14.11 GRMZM2G038588 Q54N48 Protein CLP1 homolog S5_60131644 5 60,131,644 1.3e-06 A/T 2.38 13.80 GRMZM2G097683 Q9XGX0 Putative zinc finger protein SHI S6_131544420 6 131,544,420 8.4e-12 T/C 5.04 21.21 S6_164852452 6 164,852,452 7.2e-07 G/A -0.10 0.16 GRMZM2G030305 Q5SN53 Mitogen-activated protein kinase 8 Simultaneous fit 57.47 RW S1_46679288...”
- Growth Developmental Defects of Mitochondrial Iron Transporter 1 and 2 Mutants in Arabidopsis in Iron Sufficient Conditions
Vargas, Plants (Basel, Switzerland) 2023 - “...genes were found to be upregulated (cluster 2), for example AIL7/PLT7 (At5g65510), LRP1 (At5g12330), SHI (At5g66350), SGR5 (At2g09140), SKP2A (At1g21410), ENP/MACCHI-BOU4/NPY1 (At4g31820), TCP18 (At3g18530), and GH3.5 (At4g27260). Whether these changes are related to the observed phenotypes similar to those of polar auxin transport mutants remains to...”
- Molecular Targets and Biological Functions of cAMP Signaling in Arabidopsis
Xu, Biomolecules 2021 - “...]; SPEECHLESS (AT5G53210) is required for the stomatal initiation and development [ 122 ]; SHI (AT5G66350) acts in gynoecium development [ 123 ]; BBX32 (AT3G21150) modulates light signaling [ 124 ]; CDF5 (AT1G69570) contributes to photoperiodic flowering by modulating an underlying diurnal rhythm in CONSTANS transcript...”
- “...(WRKY), AT5G03150 (C2H2), AT5G67450 (C2H2), AT2G40140 (C3H), AT5G53210 (bHLH), AT5G11060 (TALE), AT1G46480 (WOX), AT3G10590 (MYB-related), AT5G66350 (SRS), AT2G17040 (NAC), AT3G21150 (C2C2 $ ), AT4G14465 (AT-hook $ ) AT1G22810 (ERF), AT1G43160 (ERF), AT1G72360 (ERF), AT4G06746 (ERF), AT4G32800 (ERF), AT5G25810 (ERF), AT5G53290 (ERF), AT5G64750 (ERF),AT5G67190 (ERF), AT1G12540 (bHLH),...”
- Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...MtSTY5 (MtrunA17Chr3g0142171), MtSTY6 (MtrunA17Chr4g0035591), MTSTY7 (MtrunA17Chr5g0441921), MtSTY8 (MtrunA17Chr1g0155791) MtSTY9 (MtrunA17Chr8g0353111); and A . thaliana SHI (At5g66350), STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus...”
- An integrated analysis of cell-type specific gene expression reveals genes regulated by REVOLUTA and KANADI1 in the Arabidopsis shoot apical meristem
Ram, PLoS genetics 2020 - “...AT2G45190 ), ANT-LIKE 6 (AT5G10510), STYLISH1 ( AT3G51060 ), STYLISH2 ( AT4G36260 ), SHI ( AT5G66350 ), ROXY1 ( AT3G02000 ), BOP1 ( AT3G57130 ), BOP2 ( AT2G41370 ), DRNL ( AT1G24590 ), MONOPTEROS ( AT1G19850 ), ZPR3 ( AT3G52770 ), PHB ( AT2G34710 ), and...”
- The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
Frerichs, BMC genomics 2016 - “...INFLORESCENCE DEFICIENT IN ABSCISSION ( IDA )- LIKE 2 IDL2 At5g64667 +1.93 SHORT INTERNODES SHI At5g66350 +1.92 MiRNAs and the siRNA precursor TAS3A TAS3A At3g17185 2.21 MiR390A At2g38325 2.73 MiR159 / 159B At1g18075 2.86 MiR172D At3g55512 3.06 MiR156E At5g11977 3.20 MiR172 / 172B At5g04275 5.55 MiR164...”
- Auxin biosynthesis
Zhao, The arabidopsis book 2014 - “...and/or YUC genes. The SHORT INTENOTES/STYLISH (SHI/STY) (SHI: AT5G66350; STY1: AT3G51060) family of transcription factors plays an important role in leaf and...”
- Next generation sequencing unravels the biosynthetic ability of spearmint (Mentha spicata) peltate glandular trichomes through comparative transcriptomics
Jin, BMC plant biology 2014 - “...myb comp25286_c0 2.13 0.00 3.80 3.80 AT5G01380 Homeodomain like TF comp30569_c1 2.32 1.08 4.85 3.77 AT5G66350 Lateral root primordium comp26625_c0 2.15 1.37 5.04 3.67 AT1G75390 bzip domain comp17332_c0 0.00 0.00 3.65 3.65 AT1G73230 btf3 comp32174_c0 3.56 2.22 5.70 3.48 AT5G13080 WRKY comp28852_c0 0.95 0.00 3.32 3.32...”
- Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants
Islam, PloS one 2013 - “...Primer sequences used to amplify a fragment of approximately 500 bp for the AtSHI gene (At5g66350) were 5-ACTCTAACGCTGACGGTGGA-3 (forward) and 5-TGCTGACCGGTAGAAAGCTG-3 (reverse). PCR amplification was performed in a C1000 thermal cycler (BIO-RAD, Singapore) using the following conditions: 15 min at 95C (1 cycle) followed by 30...”
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NP_001330898 Lateral root primordium (LRP) protein-like protein from Arabidopsis thaliana
Aligns to 116:263 / 331 (44.7%), covers 98.7% of PF05142, 214.2 bits
SRS7_ARATH / Q9FXH7 Protein SHI RELATED SEQUENCE 7 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
NP_001031069 SHI-related sequence 7 from Arabidopsis thaliana
AT1G19790 SRS7 (SHI-RELATED SEQUENCE 7) from Arabidopsis thaliana
Aligns to 115:272 / 345 (45.8%), covers 98.7% of PF05142, 213.6 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development.
disruption phenotype: No visible phenotype. - Activation tagging of an Arabidopsis SHI-RELATED SEQUENCE gene produces abnormal anther dehiscence and floral development.
Kim, Plant molecular biology 2010 (PubMed)- GeneRIF: Mutations within SRS7 cause disrupted anther dehiscence and abnormal floral organ development in addition to dwarfed growth with small, curled leaves.
- Transcriptome analysis at mid-stage seed development in litchi with contrasting seed size
Pathak, 3 Biotech 2022 - “...Contrary to this, the putative SRS7 gene (AT1G19790; c53897_g1_i1, c53897_g1_i4, c53897_g1_i5 and c53897_g1_i6) was up-regulated in small-seeded litchi at 28...”
- Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative studies with M . truncatula STY s were also performed. Lotusjaponicus and...”
- Genome-Wide Identification and Characterization of the SHI-Related Sequence Gene Family in Rice
Yang, Evolutionary bioinformatics online 2020 - “...as playing roles in root development and gynoecium development compared with the other groups, respectively. AT1G19790 was involved in sequence-specific DNA binding in group G ( Supplementary Table S2 ). All these specific annotations in different groups from E to K imply possible divergent functions of...”
- The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
Frerichs, BMC genomics 2016 - “...Other transcription factors SHI-RELATED SEQUENCE4 SRS4 At2g18120 +3.61 STYLISH1 STY1 At3g51060 +2.74 SHI-RELATED SEQUENCE7 SRS7 At1g19790 +2.21 INFLORESCENCE DEFICIENT IN ABSCISSION ( IDA )- LIKE 2 IDL2 At5g64667 +1.93 SHORT INTERNODES SHI At5g66350 +1.92 MiRNAs and the siRNA precursor TAS3A TAS3A At3g17185 2.21 MiR390A At2g38325 2.73...”
- Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana
Gliwicka, PloS one 2013 - “...30.06 2.10 Steady expression AT1G06170 bHLH89/EN24 bHLH Flower development, ZE [49] 7.89 4.59 Steady expression AT1G19790 SRS7 SRS Flower development 3.92 1.32 Steady expression AT1G25250 IDD16 C2H2 1.10 2.50 Steady expression AT1G25560 EDF1/TEM1 AP2/EREBP Flowering time 2.95 9.51 Steady expression AT1G28160 ERF087 AP2/EREBP Stress 9.51 1.88...”
- Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts
Balazadeh, Frontiers in plant science 2012 - “...NAC 1.41 3.14 At1g12260 NAC 9.20 0.96 At5g64060 NAC 0.12 0.11 At5g64530 NAC 0.08 1.20 At1g19790 SRS 0.88 0.17 At2g18120 SRS 0.43 0.73 At1g66600 WRKY 0.53 1.60 At2g21400 SRS 0.27 1.28 At1g69310 WRKY 0.63 0.51 At3g54430 SRS 0.14 0.26 At1g69810 WRKY 0.89 1.49 At4g36260 SRS 0.33...”
SRS5_ARATH / Q9LQZ5 Protein SHI RELATED SEQUENCE 5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_177684 SHI-related sequence 5 from Arabidopsis thaliana
AT1G75520 SRS5 (SHI-RELATED SEQUENCE 5) from Arabidopsis thaliana
Aligns to 121:285 / 346 (47.7%), covers 98.7% of PF05142, 211.2 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM).
disruption phenotype: No visible phenotype. - Auxin abolishes SHI-RELATED SEQUENCE5-mediated inhibition of lateral root development in Arabidopsis.
Yuan, The New phytologist 2020 (PubMed)- GeneRIF: Auxin abolishes SHI-RELATED SEQUENCE5-mediated inhibition of lateral root development in Arabidopsis.
- The COP1 Target SHI-RELATED SEQUENCE5 Directly Activates Photomorphogenesis-Promoting Genes.
Yuan, The Plant cell 2018 - GeneRIF: SRS5 directly activates the expression of downstream genes HY5, BBX21, and BBX22 and is a target of COP1-mediated degradation in Arabidopsis.SRS5 degradation mediated by COP1 ensures proper seedling development.
- Transcriptomic and iTRAQ-Based Quantitative Proteomic Analyses of inap CMS in Brassica napus L
Wang, Plants (Basel, Switzerland) 2022 - “...1.29 0.0458 AT3G10670 Anther and pollen development BnaAnng09150D Protein SHI RELATED SEQUENCE 5 0.74 0.0462 AT1G75520 BnaC05g00110D Squamosa promoter-binding-like protein 8 0.72 0.0031 AT4G39400 BnaC01g09870D Piriformospora indica-insensitive protein 2 0.56 0.0012 AT1G13230 BnaA07g08200D Pollen-specific protein-like 0.48 0.0054 AT4G18596 BnaA03g58200D Pollen-specific protein-like 0.37 0.0061 AT4G18596 Pectinesterase BnaC02g00700D...”
- Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “.... thaliana SHI (At5g66350), STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative studies with M . truncatula STY s were...”
- Illuminating the COP1/SPA Ubiquitin Ligase: Fresh Insights Into Its Structure and Functions During Plant Photomorphogenesis
Ponnu, Frontiers in plant science 2021 - “...et al., 2016 SPA2 AT4G11110 Serine/threonine kinase Yes Yes Photomorphogenesis Chen et al., 2015 SRS5 AT1G75520 RING finger-like zinc finger protein Yes Nd Photomorphogenesis Yuan et al., 2018 WDL3 AT3G23090 Microtubule regulatory protein Yes Nd Photomorphogenesis, hypocotyl elongation Lian et al., 2017 List of proteins targeted...”
- Auxin abolishes SHI-RELATED SEQUENCE5-mediated inhibition of lateral root development in Arabidopsis
Yuan, The New phytologist 2020 (PubMed) (secret) - The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa
Subramaniam, Genome biology and evolution 2013 - “...last accessed March 23, 2013) shows GEvo blastn output graphic, where the query is Arabidopsis At1G75520 , a bigfoot gene encoding a RING zinc finger protein of unknown function, displayed with its corresponding -homeolog. Both manually curated (v2, color-coded purple) and automated pipeline 3.0-generated CNSs (color-coded...”
- “...( http://coge.iplantcollaborative.org , last accessed March 23, 2013). The figure compares an At gene ( AT1G75520 ), a member of SHI transcription factor gene family and its homeolog. Blastn HSPs between the two genes (orange rectangles), manually updated CNSs (purple blocks on upper model line; V2,...”
SRS2_ARATH / O65517 Protein SHI RELATED SEQUENCE 2; Protein STYLISH 2 from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
AT4G36260 STY2 (STYLISH 2); transcription factor from Arabidopsis thaliana
Aligns to 90:247 / 322 (49.1%), covers 98.7% of PF05142, 210.4 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM).
disruption phenotype: No visible phenotype. The double mutant sty1-1 and sty2-1 has a reduction in the amount of stylar and stigmatic tissues and decreased proliferation of stylar xylem, as well as shorter siliques and rosette and cauline leaves with a higher degree of serration. Hypersensitive to 1-N-naphthylphtalamic acid (NPA), but restored by exogenous application of auxin. - Multi-Omics Analysis Reveals Synergistic Enhancement of Nitrogen Assimilation Efficiency via Coordinated Regulation of Nitrogen and Carbon Metabolism by Co-Application of Brassinolide and Pyraclostrobin in Arabidopsis thaliana
An, International journal of molecular sciences 2023 - “...0.11 AT1G53160 SPL4 0.65 AT5G59990 - 0.58 AT5G43270 SPL2 0.26 DBB AT1G06040 BBX24 0.15 SRS AT4G36260 SRS2 0.90 AT4G38960 - 0.41 TALE AT4G36870 BLH2 0.31 Dof AT1G51700 DOF1.7 0.30 TCP AT1G72010 TCP22 0.23 AT3G47500 CDF3 0.20 AT3G15030 TCP4 0.50 AT5G60200 DOF5.3 0.47 AT3G47620 TCP14 0.28 ERF...”
- Transcriptional network underpinning ploidy-related elevated leaf potassium in neo-tetraploids
Fischer, Plant physiology 2022 - “...XTH15 (AT4G14130), (AT4G19520), (AT4G23050), (AT4G26010), BGAL12 (AT4G26140), MAPKKK16 (AT4G26890), (AT4G29690), HMA2 (AT4G30110), XTH18 (AT4G30280), STY2 (AT4G36260), PDC3 (AT5G01330), (AT5G05900), LAC13 (AT5G07130), (AT5G08250), EXT23 (AT5G19810), STOP2 (AT5G22890), SLAH3 (AT5G24030), (AT5G35525), (AT5G38100), PER64 (AT5G42180), PHT1;1 (AT5G43350), XTH20 (AT5G48070), (AT5G48290), EXT11 (AT5G49080), MYB36 (AT5G57620), ZIP2 (AT5G59520), FLS5 (AT5G63600), VQ34...”
- Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...MTSTY7 (MtrunA17Chr5g0441921), MtSTY8 (MtrunA17Chr1g0155791) MtSTY9 (MtrunA17Chr8g0353111); and A . thaliana SHI (At5g66350), STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative...”
- An integrated analysis of cell-type specific gene expression reveals genes regulated by REVOLUTA and KANADI1 in the Arabidopsis shoot apical meristem
Ram, PLoS genetics 2020 - “...YABBY1 / FIL ( AT2G45190 ), ANT-LIKE 6 (AT5G10510), STYLISH1 ( AT3G51060 ), STYLISH2 ( AT4G36260 ), SHI ( AT5G66350 ), ROXY1 ( AT3G02000 ), BOP1 ( AT3G57130 ), BOP2 ( AT2G41370 ), DRNL ( AT1G24590 ), MONOPTEROS ( AT1G19850 ), ZPR3 ( AT3G52770 ), PHB...”
- Transcriptional regulatory framework for vascular cambium development in Arabidopsis roots
Zhang, Nature plants 2019 - “...AT1G16060; AHL11 , AT3G61310; MYB47 , AT1G18710; MYB95 , AT1G74430; MYB87 , AT4G37780; STY2 , AT4G36260; RAS1 , AT1G09950; AtERF019 , AT1G22810; AtERF021 , AT1G71450; AtERF029 , AT4G25490; AtERF032 , AT1G63030; AtERF043 , AT4G32800; AtERF071 , AT2G47520; AtERF072 , AT3G16770; WOX4 , AT1G46480; WOX13 , AT4G35550;...”
- Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts
Balazadeh, Frontiers in plant science 2012 - “...SRS 0.27 1.28 At1g69310 WRKY 0.63 0.51 At3g54430 SRS 0.14 0.26 At1g69810 WRKY 0.89 1.49 At4g36260 SRS 0.33 0.12 At5g12330 SRS 2.00 0.13 At1g80840 WRKY 1.49 6.06 At5g33210 SRS 0.21 0.79 At2g03340 WRKY 0.12 0.13 At5g66350 SRS 0.18 0.07 At2g04880 WRKY 0.04 0.72 At1g05690 TAZ 0.02...”
- De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)
Logacheva, BMC genomics 2011 - “...STK AT4G09960 Fagopyrum_tataricum_MIRA_VER3_c6138 DICER-LIKE1 AT1G01040 Fagopyrum_tataricum_MIRA_VER3_c24560 SPATULA AT4G36930 Fagopyrum_esculentum_MIRA_VER3_c7255 Fagopyrum_tataricum_MIRA_VER3_c22310 STY1 AT3G51060 Fagopyrum_esculentum_MIRA_VER3_c19680 Fagopyrum_tataricum_MIRA_VER3_c6938 STY2 AT4G36260 BIG BROTHER AT3G63530 Fagopyrum_esculentum_MIRA_VER3_c12106 Fagopyrum_tataricum_MIRA_VER3_c5454 HWS AT3G61590 Fagopyrum_esculentum_MIRA_VER3_c12481 Since this type of search is not able to detect duplications, we performed a manual inspection of the results of BLAST search...”
GRMZM2G017606 SHI from Zea mays
Aligns to 93:237 / 296 (49.0%), covers 98.7% of PF05142, 205.3 bits
LRP1_ARATH / Q94CK9 Protein LATERAL ROOT PRIMORDIUM 1 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT5G12330 LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization from Arabidopsis thaliana
Aligns to 108:272 / 320 (51.6%), covers 98.7% of PF05142, 198.9 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth.
subunit: Homodimer.
disruption phenotype: No visible phenotype. - Growth Developmental Defects of Mitochondrial Iron Transporter 1 and 2 Mutants in Arabidopsis in Iron Sufficient Conditions
Vargas, Plants (Basel, Switzerland) 2023 - “...1). Other genes were found to be upregulated (cluster 2), for example AIL7/PLT7 (At5g65510), LRP1 (At5g12330), SHI (At5g66350), SGR5 (At2g09140), SKP2A (At1g21410), ENP/MACCHI-BOU4/NPY1 (At4g31820), TCP18 (At3g18530), and GH3.5 (At4g27260). Whether these changes are related to the observed phenotypes similar to those of polar auxin transport mutants...”
- Genetic control of tolerance to drought stress in soybean
Saleem, BMC plant biology 2022 - “...accumulation) [ 77 ] WUE 2, WUE 3 CW_LDS_4 Gm20_5309031_5709031 AX-93900908_A_C 4.6 0.14 0.76 Glyma.20G037100 AT5G12330 (LRP1) Lateral root primordium (LRP) protein-related (root development) [ 78 ] N/A CW_LDS_5 Gm20_43251405_43651405 AX-93910009_G_T 7.3 0.04 0.6 Glyma.20G197600 AT2G29460 (GSTU4) Glutathione S-transferase tau 4 (oxidative stress response) [ 79...”
- Transcriptomic profiles of poplar (Populus simonii × P. nigra) cuttings during adventitious root formation
Yu, Frontiers in genetics 2022 - “...) were elevated during the AR formation. The expression level of Potri.009G070800 (best hit of AT5G12330, LRP1 ) was increased 4.6, 8.6, 14.2, 16.6, and 11.6 times during the AR formation process ( Figure 4 ). The expression level of Potri.005G087000 (best hit of AT5G64770.1 ,...”
- Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...MtSTY8 (MtrunA17Chr1g0155791) MtSTY9 (MtrunA17Chr8g0353111); and A . thaliana SHI (At5g66350), STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative studies with...”
- AtDRO1 is nuclear localized in root tips under native conditions and impacts auxin localization
Waite, Plant molecular biology 2020 - “...5.07 4.23E02 AT3G59430 AT3G59430 Unknown protein 4.85 2.25E03 AT3G42725 AT3G42725 Putative membrane lipoprotein 4.73 4.18E03 AT5G12330 LRP1 Encodes LRP1 (LATERAL ROOT PRIMORDIUM 1) 4.59 7.20E03 AT3G06310 AT3G06310 Cox19-like CHCH family protein 4.32 2.60E02 AT2G35660 CTF2A FAD/NAD(P)-binding oxidoreductase family protein 4.29 3.45E02 AT3G27300 G6PD5 Glucose-6-phosphate dehydrogenase 5...”
- Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra
Wildhagen, Tree physiology 2018 - “...PROTEIN 92 (ATMYB92) 0.83 5.55E46 Potri.007G093900 0.43 3.41E02 AT2G23130 Arabinogalactan protein 17 Potri.007G051600 0.56 4.63E03 AT5G12330 LATERAL ROOT PRIMORDIUM 1 (LRP1) 0.81 2.59E43 Potri.003G196100 0.65 5.87E04 AT3G22800 Leucine-rich repeat (LRR) family protein Potri.010G083000 0.50 1.31E02 AT5G14750 MYB DOMAIN PROTEIN 66 (ATMYB66) 0.81 1.11E42 Potri.003G064600 0.53 7.37E03...”
- Genome-Wide Association and Transcriptome Analyses Reveal Candidate Genes Underlying Yield-determining Traits in Brassica napus
Lu, Frontiers in plant science 2017 - “...( BnaA10g01410D, AT1G02820 ) 14 A10 E1-SPP, E4-SPP 8.23E-05~4.78E-05 0.0438~0.1216 14,240,79314,329,378 BnaA10g20290D-BnaA10g20540D Bna.LRP1 ( BnaA10g20370D, AT5G12330 ) 15 C01 E3-BY, E3-SPP 5.30E-08~1.58E-06 0.1293~0.1703 15,864,96216,351,149 BnaC01g22420D-BnaC01g22820D Bna.PRP17 ( BnaC01g22500D, AT4G15160 ) 16 C04 E1-BPN, E1-PNP 1.13E-07~3.30E-07 0.0688~0.0736 42,450,40642,860,566 BnaC04g41700D-BnaC04g42260D Bna.bHLH91 ( BnaC04g42030D, AT2G31210 ) 17 C06 E3-BY,...”
- LATERAL ROOT PRIMORDIA 1 of maize acts as a transcriptional activator in auxin signalling downstream of the Aux/IAA gene rootless with undetectable meristem 1
Zhang, Journal of experimental botany 2015 - “...plant-specific gene family of transcription factors in maize, the Arabidopsis LRP1 protein sequence (Genbank AC: AT5G12330) was used as a query for homology searches in maizegdb.org. As a result, nine S HORT INTERNODES- R ELATED S EQUENCE (SRS) proteins designated LRP1 and LRP1-Like1 (LRL1) to LRP1-Like8...”
- More
SRS4_ARATH / Q9SI19 Protein SHI RELATED SEQUENCE 4 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G18120 SRS4 (SHI-RELATED SEQUENCE 4) from Arabidopsis thaliana
Aligns to 68:207 / 222 (63.1%), covers 98.7% of PF05142, 192.3 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM).
disruption phenotype: No visible phenotype. - Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...and A . thaliana SHI (At5g66350), STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative studies with M . truncatula STY...”
- The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
Frerichs, BMC genomics 2016 - “...3-OXIDASE1 GA3ox1 At1g15550 +1.97 GIBBERELLIN 2-OXIDASE2 GA2ox2 At1g30040 +1.58 Other transcription factors SHI-RELATED SEQUENCE4 SRS4 At2g18120 +3.61 STYLISH1 STY1 At3g51060 +2.74 SHI-RELATED SEQUENCE7 SRS7 At1g19790 +2.21 INFLORESCENCE DEFICIENT IN ABSCISSION ( IDA )- LIKE 2 IDL2 At5g64667 +1.93 SHORT INTERNODES SHI At5g66350 +1.92 MiRNAs and the...”
- Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts
Balazadeh, Frontiers in plant science 2012 - “...NAC 9.20 0.96 At5g64060 NAC 0.12 0.11 At5g64530 NAC 0.08 1.20 At1g19790 SRS 0.88 0.17 At2g18120 SRS 0.43 0.73 At1g66600 WRKY 0.53 1.60 At2g21400 SRS 0.27 1.28 At1g69310 WRKY 0.63 0.51 At3g54430 SRS 0.14 0.26 At1g69810 WRKY 0.89 1.49 At4g36260 SRS 0.33 0.12 At5g12330 SRS 2.00...”
SRS3_ARATH / Q9SJT8 Protein SHI RELATED SEQUENCE 3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT2G21400 SRS3 (SHI-RELATED SEQUENCE3) from Arabidopsis thaliana
2 alignments in 5:126 / 174 (70.1%), covering up to 38.4% of PF05142, 167.1 bits
- function: Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM).
disruption phenotype: No visible phenotype. - Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...MtSTY9 (MtrunA17Chr8g0353111); and A . thaliana SHI (At5g66350), STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative studies with M ....”
- Genome wide transcriptome analysis reveals ABA mediated response in Arabidopsis during gold (AuCl(-) 4) treatment
Shukla, Frontiers in plant science 2014 - “...COL5 C2C2-CO-like At5g54470 NA C2C2-Dof At1g69570 NA C2H2 At5g60470 NA C2H2 At3g28210 NA PMZ C2H2 At2g21400 NA SRS3 C2H2 At3g49930 NA C2H2 At3g05155 NA C2H2 At3g05160 NA C3H At5g05530 NA C3H At5g42200 NA C3H At1g14200 NA C3H At5g55970 NA Homeobox At1g70920 HD-Zip II ATHB18 Homeobox At3g61890...”
- Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts
Balazadeh, Frontiers in plant science 2012 - “...NAC 0.08 1.20 At1g19790 SRS 0.88 0.17 At2g18120 SRS 0.43 0.73 At1g66600 WRKY 0.53 1.60 At2g21400 SRS 0.27 1.28 At1g69310 WRKY 0.63 0.51 At3g54430 SRS 0.14 0.26 At1g69810 WRKY 0.89 1.49 At4g36260 SRS 0.33 0.12 At5g12330 SRS 2.00 0.13 At1g80840 WRKY 1.49 6.06 At5g33210 SRS 0.21...”
AT3G54430 SRS6 (SHI-RELATED SEQUENCE 6) from Arabidopsis thaliana
Aligns to 37:173 / 183 (74.9%), covers 98.7% of PF05142, 144.6 bits
- Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...SHI (At5g66350), STY1 (NM_114966), STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative studies with M . truncatula STY s were also performed....”
- Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts
Balazadeh, Frontiers in plant science 2012 - “...SRS 0.43 0.73 At1g66600 WRKY 0.53 1.60 At2g21400 SRS 0.27 1.28 At1g69310 WRKY 0.63 0.51 At3g54430 SRS 0.14 0.26 At1g69810 WRKY 0.89 1.49 At4g36260 SRS 0.33 0.12 At5g12330 SRS 2.00 0.13 At1g80840 WRKY 1.49 6.06 At5g33210 SRS 0.21 0.79 At2g03340 WRKY 0.12 0.13 At5g66350 SRS 0.18...”
AT5G33210 SRS8 (SHI-RELATED SEQUENCE 8) from Arabidopsis thaliana
Aligns to 48:157 / 173 (63.6%), covers 59.6% of PF05142, 110.6 bits
- Lotus japonicus Nuclear Factor YA1, a nodule emergence stage-specific regulator of auxin signalling
Shrestha, The New phytologist 2021 - “...STY2 (At4g36260), LRP1 (At5g12330), SRS3 (At2g21400), SRS4 (At2g18120), SRS5 (At1g75520), SRS6 (At3g54430), SRS7 (At1g19790), SRS8 (At5g33210). Followup experiments were directed toward functional characterization of the L . japonicus genes but limited comparative studies with M . truncatula STY s were also performed. Lotusjaponicus and M ....”
- Expression of ROS-responsive genes and transcription factors after metabolic formation of H(2)O(2) in chloroplasts
Balazadeh, Frontiers in plant science 2012 - “...WRKY 0.89 1.49 At4g36260 SRS 0.33 0.12 At5g12330 SRS 2.00 0.13 At1g80840 WRKY 1.49 6.06 At5g33210 SRS 0.21 0.79 At2g03340 WRKY 0.12 0.13 At5g66350 SRS 0.18 0.07 At2g04880 WRKY 0.04 0.72 At1g05690 TAZ 0.02 0.84 At1g25580 NAC 0.08 0.68 At5g65310 NAC 0.10 0.20 At5g66300 NAC 0.03...”
LOC108197576 uncharacterized protein LOC108197576 from Daucus carota subsp. sativus
Aligns to 39:179 / 377 (37.4%), covers 26.5% of PF05142, 26.1 bits
- Comparative analysis of the carrot miRNAome in response to salt stress
Szymonik, Scientific reports 2023 - “...family AAA domain-containing protein 1-B-like LOC108214061 1 0.005 dca-miR423 Uncharacterized LOC108211904 1 0.005 dca-miR423 Uncharacterized LOC108197576 2 0.012 dca-miR423 17.1kDa class II heat shock protein-like LOC108198986 2 0.033 dca-miR423 Metal-nicotianamine transporter YSL3-like LOC108214062 2 0.037 dca-miR423 Thioredoxin-like protein CDSP32, chloroplastic LOC108210741 2 0.060 dca-miR423 Uncharacterized LOC108193287...”
AT1G32730 hypothetical protein from Arabidopsis thaliana
Aligns to 27:149 / 327 (37.6%), covers 51.7% of PF05142, 22.7 bits
- Genome-Wide Identification and Expression Analysis of the SHI-Related Sequence Family in Cassava
Huang, Genes 2023 - “...SRS5 , SRS6 , and SRS7 ) and five putative interaction proteins (KIN13A, NGA3, YUC4, AT1G32730, and AT3G06840) directly connected to MeSRS proteins using statistical analysis of eight MeSRS proteins ( Figure 6 ). Among the seven discovered similar proteins in A. thaliana , SRS3 had...”
- Genome-Wide Identification and Expression Profiling of the SRS Gene Family in Melilotus albus Reveals Functions in Various Stress Conditions
Ma, Plants (Basel, Switzerland) 2022 - “...AtSRS6 , AtSRS7 , AtSRS8 , AtSHI , AtSTY1 , AtSTY2 , AtLRP1 , and AT1G32730 ) have been identified and play essential roles in Arabidopsis growth and development [ 12 , 13 ]. Overexpression of AtSRS5 directly activates the expression of HY5 , BBX21, and...”
- “...AtSRSs ( AtSRS3 , AtSRS6 , AtSRS7 , LRP1 , SHI , STY1 , and AT1G32730 ) had sequence proximity and thus relates physical interaction and associated functional relationships with MaSRS genes, and five AtSRSs ( AtSRS4 , AtSRS8 , YUC4 , NGA3 , and AT3G06840...”
- The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis
Diego-Martin, Nucleic acids research 2022 - “...0 18 21 OPF2 AT3G20280 - 28 30 0 4 13 0 4 12 PSA1 AT1G32730 - 32 33 0 17 20 0 17 20 PSA2 AT1G06500 - 31 32 0 7 9 0 7 9 SHH2 AT3G18380 - 30 30 0 14 16 0 14...”
- “...0 19 15 OPF2 AT3G20280 - 31 30 0 16 15 0 15 15 PSA1 AT1G32730 - 34 32 0 18 16 0 18 16 PSA2 AT1G06500 - 32 31 0 9 7 0 9 7 SHH2 AT3G18380 - 31 29 0 19 16 0 19...”
- Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components
Hernández-García, Communications biology 2022 - “...subunits 27 , 36 . These uncharacterized proteins are SAWADEE HOMEODOMAIN HOMOLOG 2 (SHH2), and AT1G32730 and AT1G06500, which we refer to as PLANT-SPECIFIC SWI/SNF-ASSOCIATED PROTEIN 1 (PSA1) and PSA2, respectively (Table 2 ). While no functional data exists for PSA1 and PSA2, SHH2 has been...”
- “...SHH2 AT3G18380 - 29 29 - 20 18 - 35 36 24 35 35 PSA1 AT1G32730 - 29 28 - 21 19 - 29 28 - 29 29 BDH1 AT4G22320 - 29 30 - 20 18 - 27 27 - 28 27 OPF1 AT1G50620 - 29...”
- Genome-Wide Analysis of the Shi-Related Sequence Family and Functional Identification of GmSRS18 Involving in Drought and Salt Stresses in Soybean
Zhao, International journal of molecular sciences 2020 - “...SRS7 , and SRS8 in Arabidopsis . In addition to this, we referred to AtSRS11 (AT1G32730), which also had the conserved RING-like zinc finger domain, as one member of SRS family. In this way, we could define that the main characteristic of this family is that...”
- Genome-Wide Identification and Characterization of the SHI-Related Sequence Gene Family in Rice
Yang, Evolutionary bioinformatics online 2020 - “...and xylem and phloem pattern formation. In addition, group I contained only one A. thaliana (AT1G32730) member that annotated as located in membrane. Groups F and G contained members that were annotated as playing roles in root development and gynoecium development compared with the other groups,...”
Or search for genetic data about PF05142 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory