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Family Search for PF05142 (DUF702)

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PF05142 hits 17 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

EOT1_SOLLC / K4B6C9 Protein EXPRESSION OF TERPENOIDS 1; SlEOT1 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum) (see 2 papers)
Aligns to 125:274 / 351 (42.7%), covers 98.7% of PF05142, 219.5 bits

SHI1_ORYSJ / Q652K4 Protein SHORT INTERNODES 1; OsSHI1 from Oryza sativa subsp. japonica (Rice) (see paper)
Aligns to 93:243 / 315 (47.9%), covers 98.7% of PF05142, 217.7 bits

XP_008656860 protein LATERAL ROOT PRIMORDIUM 1 from Zea mays
Aligns to 122:290 / 360 (46.9%), covers 98.7% of PF05142, 215.7 bits

SRS1_ARATH / Q9SD40 Protein SHI RELATED SEQUENCE 1; Protein STYLISH 1 from Arabidopsis thaliana (Mouse-ear cress) (see 7 papers)
NP_190675 Lateral root primordium (LRP) protein-like protein from Arabidopsis thaliana
AT3G51060 STY1 (STYLISH 1); protein heterodimerization/ transcription factor from Arabidopsis thaliana
Aligns to 140:287 / 370 (40.0%), covers 98.0% of PF05142, 215.6 bits

SHI_ARATH / Q9XGX0 Protein SHORT INTERNODES from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT5G66350 SHI (SHORT INTERNODES); protein binding / protein heterodimerization/ transcription factor from Arabidopsis thaliana
Aligns to 116:263 / 331 (44.7%), covers 98.7% of PF05142, 214.2 bits

NP_001330898 Lateral root primordium (LRP) protein-like protein from Arabidopsis thaliana
Aligns to 116:263 / 331 (44.7%), covers 98.7% of PF05142, 214.2 bits

SRS7_ARATH / Q9FXH7 Protein SHI RELATED SEQUENCE 7 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT1G19790 SRS7 (SHI-RELATED SEQUENCE 7) from Arabidopsis thaliana
NP_001031069 SHI-related sequence 7 from Arabidopsis thaliana
Aligns to 115:272 / 345 (45.8%), covers 98.7% of PF05142, 213.6 bits

SRS5_ARATH / Q9LQZ5 Protein SHI RELATED SEQUENCE 5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G75520 SRS5 (SHI-RELATED SEQUENCE 5) from Arabidopsis thaliana
NP_177684 SHI-related sequence 5 from Arabidopsis thaliana
Aligns to 121:285 / 346 (47.7%), covers 98.7% of PF05142, 211.2 bits

SRS2_ARATH / O65517 Protein SHI RELATED SEQUENCE 2; Protein STYLISH 2 from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
AT4G36260 STY2 (STYLISH 2); transcription factor from Arabidopsis thaliana
Aligns to 90:247 / 322 (49.1%), covers 98.7% of PF05142, 210.4 bits

GRMZM2G017606 SHI from Zea mays
Aligns to 93:237 / 296 (49.0%), covers 98.7% of PF05142, 205.3 bits

LRP1_ARATH / Q94CK9 Protein LATERAL ROOT PRIMORDIUM 1 from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT5G12330 LRP1 (LATERAL ROOT PRIMORDIUM 1); protein homodimerization from Arabidopsis thaliana
Aligns to 108:272 / 320 (51.6%), covers 98.7% of PF05142, 198.9 bits

SRS4_ARATH / Q9SI19 Protein SHI RELATED SEQUENCE 4 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G18120 SRS4 (SHI-RELATED SEQUENCE 4) from Arabidopsis thaliana
Aligns to 68:207 / 222 (63.1%), covers 98.7% of PF05142, 192.3 bits

SRS3_ARATH / Q9SJT8 Protein SHI RELATED SEQUENCE 3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT2G21400 SRS3 (SHI-RELATED SEQUENCE3) from Arabidopsis thaliana
2 alignments in 5:126 / 174 (70.1%), covering up to 38.4% of PF05142, 167.1 bits

AT3G54430 SRS6 (SHI-RELATED SEQUENCE 6) from Arabidopsis thaliana
Aligns to 37:173 / 183 (74.9%), covers 98.7% of PF05142, 144.6 bits

AT5G33210 SRS8 (SHI-RELATED SEQUENCE 8) from Arabidopsis thaliana
Aligns to 48:157 / 173 (63.6%), covers 59.6% of PF05142, 110.6 bits

LOC108197576 uncharacterized protein LOC108197576 from Daucus carota subsp. sativus
Aligns to 39:179 / 377 (37.4%), covers 26.5% of PF05142, 26.1 bits

AT1G32730 hypothetical protein from Arabidopsis thaliana
Aligns to 27:149 / 327 (37.6%), covers 51.7% of PF05142, 22.7 bits

Or search for genetic data about PF05142 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory