Family Search for PF05266 (DUF724)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF05266 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DUF6_ARATH / O22897 DUF724 domain-containing protein 6; AtDUF6 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_182245 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 6) from Arabidopsis thaliana
AT2G47230 agenet domain-containing protein from Arabidopsis thaliana
Aligns to 513:700 / 701 (26.8%), covers 99.5% of PF05266, 248.6 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: Data show that AtDuf6 genes were expressed in roots, leaves, shoot apical meristems, anthers and pollen grains. They were localized in nucleus.
• Methodological implementation of mixed linear models in multi-locus genome-wide association studies
  Wen, Briefings in bioinformatics 2018
  • “...0.460 1.199 [ 31 ] At2g27380 2 11703876 4.744 0.043 0.323 1.122 [ 33 ] At2g47230 2 19396129 4.208 0.038 0.298 0.911 [ 31 ] At3g56900 3 21079518 3.081 0.032 0.311 0.661 [ 31 ] At3g57000 3 21079518 3.081 0.032 0.311 0.661 [ 31 ] At5g06550...”
  • “...al. [ 29 ]. For example, among seven known genes ( At1g03457 , At2g27380 , At2g47230 , At3g56900 , At3g57000 , At5g06550 and At5g06590 ) for 8W GH FT in this study, no genes were within the 133 candidate genes in Atwell et al. [ 29...”

DUF3_ARATH / Q9FZD9 DUF724 domain-containing protein 3; AtDUF3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G26540 agenet domain-containing protein from Arabidopsis thaliana
Aligns to 507:694 / 695 (27.1%), covers 99.5% of PF05266, 241.1 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
  subunit: Homodimer.
  disruption phenotype: No visible phenotype under normal growth conditions.
• Fine Mapping and Identification of a Candidate Gene for the Glossy Green Trait in Cabbage (Brassica oleracea var. capitata)
  Wang, Plants (Basel, Switzerland) 2023
  • “...15769050 reverse AT1G54680.4 unknown protein Bol026948 15773097 15774439 reverse unknown protein Bol026949 15776395 15780942 forward AT1G26540 Agenet domain-containing protein-related Bol026950 15803605 15804112 reverse AT1G20340 plastocyanin (petE) Bol026952 15815490 15817138 reverse AT1G20370 tRNA pseudouridylate synthase...”
• Effect of thermospermine on expression profiling of different gene using massive analysis of cDNA ends (MACE) and vascular maintenance in Arabidopsis
  Sagor, Physiology and molecular biology of plants : an international journal of functional plant biology 2021
  • “...- 2.0116 Cell division control 6 19 AT1G26540 - 2.0101 Agenet domain-containing protein 20 AT4G30860 - 2.0042 Histone-lysine N-methyltransferase ASHR3...”

DUF1_ARATH / Q9ZVT1 DUF724 domain-containing protein 1; AtDUF1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_171829 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) from Arabidopsis thaliana
AT1G03300 agenet domain-containing protein from Arabidopsis thaliana
Aligns to 482:669 / 670 (28.1%), covers 99.5% of PF05266, 239.9 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
  disruption phenotype: No visible phenotype under normal growth conditions.
• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: AtDuf4 were found to express in the root tips. They were localized in nucleus.
• Functional Insight of Nitric-Oxide Induced DUF Genes in Arabidopsis thaliana
  Nabi, Frontiers in plant science 2020
  • “...proteins in 107 species: Archae0; Bacteria4; Metazoa91; Fungi93; Plants473; Viruses0; Other Eukaryotes14 (source: NCBI BLink). AT1G03300 2.99000 0.24000 12.45833 0.00000 3.62457 Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype AT3G15310 25.97000 2.10000 12.36667 0.00000...”

NP_001190163 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 7) from Arabidopsis thaliana
Aligns to 541:721 / 723 (25.0%), covers 100.0% of PF05266, 236.5 bits

• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: was expressed in many different tissues, but with the highest level of expression in seedlings, roots, leaves and flowers. They were localized in nucleus.

DUF7_ARATH / Q8H0V4 DUF724 domain-containing protein 7; AtDUF7; ABAP1-interacting protein 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT3G62300 agenet domain-containing protein from Arabidopsis thaliana
Aligns to 540:720 / 722 (25.1%), covers 100.0% of PF05266, 236.5 bits

• function: May act as a link between DNA replication, transcription and chromatin remodeling during flower development. May participate in the repression of LHP1-targeted genes during flower development by direct interaction with LHP1 (PubMed:26538092). May be involved in the polar growth of plant cells via transportation of RNAs (Probable).
  subunit: Homodimer (PubMed:19795213, PubMed:26538092). Interacts wtih ABAP1, ARIA and LHP1 (PubMed:26538092). Interacts with the non-modified histones H1, H2B, H3 and H4 (PubMed:26538092).
• AIP1 is a novel Agenet/Tudor domain protein from Arabidopsis that interacts with regulators of DNA replication, transcription and chromatin remodeling
  Brasil, BMC plant biology 2015
  • “...sativa Os05g04180; Angiosperm Eudicot Populus trichocarpa Potri_018G030500_5, Brassica rapa Bra022578, Manihot esculenta cassava4_1_003152, A. thaliana AT3G62300, AT5G13020. The two sequences of Agenet/Tudor repetitions from AIP1 were used (AT3G62300.1 and AT3G62300.2). c Overlapping Agenet/Tudor models generated in the I-TASSER server. The structures are colored in white (B_MA_20337g0010),...”
  • “...division in leaves [ 17 ]. Among the ABAP1-interacting proteins (AIPs) identified, there was AIP1 (At3G62300), an unknown protein predicted with 722 amino acids and approximately 80,9kDa. It harbors two repeats of Agenet/Tudor domain in its N-terminal region (amino acids 1384, and 161224) as well as...”

D7U2L4 Agenet domain-containing protein from Vitis vinifera
Aligns to 886:1073 / 1074 (17.5%), covers 99.5% of PF05266, 229.2 bits

• Grape ASR-Silencing Sways Nuclear Proteome, Histone Marks and Interplay of Intrinsically Disordered Proteins
  Atanassov, International journal of molecular sciences 2022
  • “...1.53 D7T3I0 (D7T3I0_VITVI) CBI25061.3 VIT_00s0179g00340.t01 Histone H2A.1 1.71 F6GV41 (F6GV41_VITVI) CBI16181.3 VIT_06s0004g04230.t01 Histone H2B 1.74 D7U2L4 (D7U2L4_VITVI) CBI36980.3 VIT_07s0005g01810.t01 Agenet domain-containing protein 1.87 D7TCM4 (D7TCM4_VIT CBI27882.3 VIT_11s0016g01890.t01 Single myb histone 1.33 D7TED8 (D7TED8_VITVI) CBI28861.3 VIT_12s0059g01310.t01 SUMO protein 1.43 D7TUZ2 (D7TUZ2_VITVI) CBI34317.3 VIT_14s0030g00480.t01 RNA recognition motif family...”

DUF5_ARATH / Q0WNB1 DUF724 domain-containing protein 5; AtDUF5 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 59:243 / 243 (76.1%), covers 94.7% of PF05266, 224.5 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
  subunit: Homodimer.
  disruption phenotype: No visible phenotype under normal growth conditions.

AT2G47220 3' exoribonuclease family domain 1 protein-related from Arabidopsis thaliana
NP_182244 polyribonucleotide phosphorylase, putative (DOMAIN OF UNKNOWN FUNCTION 724 5) from Arabidopsis thaliana
Aligns to 285:469 / 469 (39.4%), covers 94.7% of PF05266, 224.1 bits

• Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features
  Zimmer, Genetics 2008
  • “...as the Mtr3 homolog and do not identify At2g47220. They further note that At3g60500, but not At3g12990, copurify with the TAP-tagged exosome. RNB1, which,...”
• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: AtDuf5 was expressed in many different organs with the highest level of expression in seedlings, leaves, flowers and siliques. They were also localized in nucleus.

DUF2_ARATH / F4I8W1 DUF724 domain-containing protein 2; AtDUF2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_172609 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) from Arabidopsis thaliana
Aligns to 405:603 / 604 (32.9%), covers 100.0% of PF05266, 223.8 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: AtDuf2 was detected in trichomes and the cells at the base of trichomes.

NP_001318629 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8) from Arabidopsis thaliana
Aligns to 224:398 / 399 (43.9%), covers 100.0% of PF05266, 216.3 bits

• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: Data show that AtDuf8 genes were expressed in the vascular bundles of roots . They were localized in nucleus.

DUF8_ARATH / F4KEA4 DUF724 domain-containing protein 8; AtDUF8 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 246:420 / 421 (41.6%), covers 100.0% of PF05266, 216.2 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
  disruption phenotype: No visible phenotype under normal growth conditions.

NP_001331103 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 9) from Arabidopsis thaliana
Aligns to 252:422 / 423 (40.4%), covers 99.5% of PF05266, 197.7 bits

• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: AtDuf9 RNAs were mostly detected in flowers, while undetectable or extremely low in other organs. They were localized in nucleus.

DUF9_ARATH / Q9FFA2 DUF724 domain-containing protein 9; AtDUF9 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G23780 agenet domain-containing protein from Arabidopsis thaliana
Aligns to 255:425 / 426 (40.1%), covers 99.5% of PF05266, 197.6 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
• Feedback inhibition by thiols outranks glutathione depletion: a luciferase-based screen reveals glutathione-deficient γ-ECS and glutathione synthetase mutants impaired in cadmium-induced sulfate assimilation
  Jobe, The Plant journal : for cell and molecular biology 2012
  • “...5, between the F18A17 and F15F15 markers. Candidate gene sequencing identified a point mutation in At5g23780, which causes an Ala Val (A404V) change in the glutathione synthetase protein. (b) Expression of genomic GS in the nrc2 mutant behind a constitutive promoter restores root elongation on Cd....”

DUF10_ARATH / Q9FFA0 DUF724 domain-containing protein 10; AtDUF10 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_197769 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 10) from Arabidopsis thaliana
Aligns to 370:543 / 552 (31.5%), covers 98.9% of PF05266, 193.2 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
  disruption phenotype: No visible phenotype under normal growth conditions.
• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: Data show that AtDuf10 genes were expressed in roots, stems, and in other tissues. They were also localized in nucleus.

DUF4_ARATH / O81039 DUF724 domain-containing protein 4; AtDUF4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
NP_182207 hypothetical protein (DOMAIN OF UNKNOWN FUNCTION 724 4) from Arabidopsis thaliana
AT2G46840 hypothetical protein from Arabidopsis thaliana
Aligns to 63:203 / 205 (68.8%), covers 67.6% of PF05266, 119.1 bits

• function: May be involved in the polar growth of plant cells via transportation of RNAs.
  disruption phenotype: No visible phenotype under normal growth conditions.
• Overexpression of the nuclear protein gene AtDUF4 increases organ size in Arabidopsis thaliana and Brassica napus.
  Chen, Journal of genetics and genomics = Yi chuan xue bao 2018 (PubMed)
  • GeneRIF: Overexpression of AtDUF4 increases plant organ size, possibly by influencing the expression of the cell wall-formation and auxin transporter genes that regulate cell size in Arabidopsis and the oilseed rape B. napus.
• Characterization of DUF724 gene family in Arabidopsis thaliana.
  Cao, Plant molecular biology 2010 (PubMed)
  • GeneRIF: AtDuf4 were found to express in the root tips.
• Overexpression of the nuclear protein gene AtDUF4 increases organ size in Arabidopsis thaliana and Brassica napus
  Chen, Journal of genetics and genomics = Yi chuan xue bao 2018 (PubMed)
  • “...understood. Previously, we identified a DUF724 family gene, AtDUF4 (At2g46840 ), which encodes a protein of unknown function that is 205 amino acids in length...”

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