Family Search for PF05340 (DUF740)
April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.
PF05340 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
OPS_ARATH / Q9SS80 Protein OCTOPUS from Arabidopsis thaliana (Mouse-ear cress) (see 4 papers)
AT3G09070 glycine-rich protein from Arabidopsis thaliana
NP_187519 LOW protein: UPF0503-like protein, putative (DUF740) from Arabidopsis thaliana
2 alignments in 18:654 / 685 (93.0%), covering up to 52.2% of PF05340, 687.4 bits
- function: Potentiates primary root protophloem differentiation (PubMed:22395740, PubMed:25049386, PubMed:28652362). Required, together with VCC, for embryo provasculature development and cotyledon vascular complexity and connectivity (PubMed:25149602). Regulates roots architecture (PubMed:25049386). Mediates the recruitment of ASK7/BIN2 to the plasma membrane (PubMed:28652362).
subunit: Interacts with VCC.
disruption phenotype: Short roots associated with both reduced cell division in the root meristem and altered root cell elongation. Early emergence of lateral roots at the root-hypocotyl junction (PubMed:22395740, PubMed:25049386, PubMed:28652362). Reductions in the complexity of vascular networks in cotyledons and discontinuous phloem differentiation (PubMed:25149602, PubMed:22395740, PubMed:25049386, PubMed:28652362). Impaired primary root protophloem differentiation during root development leading to altered phloem long-distance transport (PubMed:22395740). The double mutant vcc ops exhibits a complete loss of high-complexity vascular networks (PubMed:25149602). The double mutant brx ops double mutant has strongly reduced root length and meristem size, with missing protophloem strands (PubMed:28652362). - Histidine kinase inhibitors impair shoot regeneration in Arabidopsis thaliana via cytokinin signaling and SAM patterning determinants
Lardon, Frontiers in plant science 2022 - “...S245 1 4.66 1.30 1.90E-07 AT1G16520 NAI1 interacting protein OPS.1 S582 1 1.54 0.99 7.19E-06 AT3G09070 Protein OCTOPUS S241 1 1.17 1.29 9.35E-04 S365 1 1.35 1.53 1.32E-03 AT3G51950.2 S352 1 1.35 1.09 6.54E-05 AT3G51950 Zinc finger CCCH domain protein 46 Notably, 4h of TCSA treatment...”
- Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. gaud (ramie)
Xie, BMC genomics 2020 - “...DA1-related 2 CL40627Contig1 60.6 171.5 1.5 Protein DA1-related 2 CL252Contig2 23.1 94.5 2.0 UPF0503 protein At3g09070, chloroplastic Vasculature development CL12072Contig2 3.6 22.2 2.6 Ethylene-responsive transcription factor 2 ERF2 CL153Contig1 1105.8 3191.3 1.5 Ethylene-responsive transcription factor ERF109 CL16199Contig1 14.1 56.9 2.0 WUSCHEL-related homeobox 4 WOX4 CL1822Contig1 76.3...”
- Transcriptome analysis of a nematode resistant and susceptible upland cotton line at two critical stages of Meloidogyne incognita infection and development
Kumar, PloS one 2019 - “...-1.80 Putative disease resistance protein RGA4 D11 64,700,262 + 3,630 Early Gh_D11G3321 -1.31 UPF0503 protein At3g09070, D11 66,015,529 + 603 chloroplastic Early Gh_D11G3369 1.28 TMV resistance protein N D11 6,267 + 5,104 Early Gh_D11G3379 -3.38 Dirigent protein 15 D11 2,301 - 585 Early Gh_D11G3383 2.46 LRR...”
- Heterologous Expression of the Transcription Factor EsNAC1 in Arabidopsis Enhances Abiotic Stress Resistance and Retards Growth by Regulating the Expression of Different Target Genes
Liu, Frontiers in plant science 2018 - “...AT4G34200 5.25 0.32 1.72 D-3-phosphoglycerate dehydrogenase (EDA9) AT1G56600 3.54 0.27 1.72 Galactinol synthase 2 (GOLS2) AT3G09070 2.26 0.42 1.71 Protein of unknown function (DUF740) AGI a , Arabidopsis Genome Initiative. REL (+) b , the relative expression level in HE lines. REL () c , the...”
- The Arabidopsis ABA-activated kinase OST1 phosphorylates the bZIP transcription factor ABF3 and creates a 14-3-3 binding site involved in its turnover
Sirichandra, PloS one 2010 - “...1,60E-06 28 15 At3g50980 Dehydrin protein LHRSGSSSSS 3,90E-06 Glycine-rich proteins with unknown functions 1 1,6 At3g09070 Glycine-rich protein LRRTKSFSAS 7,60E-08 5 2,4 At2g38070 Glycine-rich protein LRRTKSFSAS 1,20E-07 8 4,3 At5g01170 Glycine-rich protein LRRTKSFSAK 2,40E-07 Metal binding proteins 4 2,3 At4g27590 Copper-binding protein LIRTSSFTWK 4,80E-07 12 6...”
- A Cellular Insulator against CLE45 Peptide Signaling.
Breda, Current biology : CB 2019 (PubMed)- GeneRIF: Exogenous CLE45 application or transgenically increased CLE45 dosage impairs protophloem formation, suggesting autocrine inhibition of protophloem sieve elements differentiation by CLE45 signaling.
- Phosphosite charge rather than shootward localization determines OCTOPUS activity in root protophloem.
Breda, Proceedings of the National Academy of Sciences of the United States of America 2017 - GeneRIF: S318 phosphorylation status, rather than a predominantly shootward polar localization, is a primary determinant of OPS activity
- OCTOPUS-LIKE 2, a novel player in Arabidopsis root and vascular development, reveals a key role for OCTOPUS family genes in root metaphloem sieve tube differentiation.
Ruiz, The New phytologist 2017 (PubMed)- GeneRIF: OPS and OPL2 are the first genes identified that play a role in metaphloem sieve tube differentiation.
- OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana.
Truernit, Development (Cambridge, England) 2012 (PubMed)- GeneRIF: OPS participates in vascular differentiation by interpreting longitudinal signals that lead to the transformation of vascular initials into differentiating protophloem cells. [OCTOPUS]
NP_181342 LOW protein: UPF0503-like protein, putative (DUF740) from Arabidopsis thaliana
F4IRZ1 LOW protein: UPF0503-like protein, putative (DUF740) from Arabidopsis thaliana
AT2G38070 hypothetical protein from Arabidopsis thaliana
Aligns to 25:591 / 619 (91.6%), covers 99.8% of PF05340, 624.3 bits
- OCTOPUS-LIKE 2, a novel player in Arabidopsis root and vascular development, reveals a key role for OCTOPUS family genes in root metaphloem sieve tube differentiation.
Ruiz, The New phytologist 2017 (PubMed)- GeneRIF: OPS and OPL2 are the first genes identified that play a role in metaphloem sieve tube differentiation. [OPL2]
- Spatially resolved proteomics of the stomatal lineage: polarity complexes for cell divisions and stomatal pores
Wallner, 2023 - Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice
Jayaraman, Frontiers in plant science 2022 - “...of recovery ( Figure2F ). A DUF740 domain containing OCTOPUS like (OPS-like) gene from Arabidopsis, At2g38070 , encoding for the OPS2 gene has been shown to function in the differentiation of root protophloem, similar to the OPS gene ( Truernit etal., 2012 ; Ruiz-Sola etal., 2017...”
- Activation-tagged suppressors of a weak brassinosteroid receptor mutant
Kang, Molecular plant 2010 - “...located very close to the TATA-box of the annotated At2g38070 gene encoding a member of the DUF740 family, but is 11.8kb away from the DET2 transcriptional...”
- The Arabidopsis ABA-activated kinase OST1 phosphorylates the bZIP transcription factor ABF3 and creates a 14-3-3 binding site involved in its turnover
Sirichandra, PloS one 2010 - “...3,90E-06 Glycine-rich proteins with unknown functions 1 1,6 At3g09070 Glycine-rich protein LRRTKSFSAS 7,60E-08 5 2,4 At2g38070 Glycine-rich protein LRRTKSFSAS 1,20E-07 8 4,3 At5g01170 Glycine-rich protein LRRTKSFSAK 2,40E-07 Metal binding proteins 4 2,3 At4g27590 Copper-binding protein LIRTSSFTWK 4,80E-07 12 6 At2g02835 Zinc ion binding protein LWRANTISIV 9,90E-07...”
Q8GW92 Uncharacterized protein At2g38070 from Arabidopsis thaliana
Aligns to 25:591 / 619 (91.6%), covers 99.8% of PF05340, 623.4 bits
OPSL1_ARATH / Q9LFB9 Protein OCTOPUS-like; AtOPSL1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT5G01170 glycine-rich protein from Arabidopsis thaliana
3 alignments in 17:529 / 568 (90.3%), covering up to 69.6% of PF05340, 494.7 bits
- function: Potentiates primary root protophloem differentiation. Regulates roots architecture.
- Phosphosite charge rather than shootward localization determines OCTOPUS activity in root protophloem
Breda, Proceedings of the National Academy of Sciences of the United States of America 2017 - “...(Bd2g23700), as well as an Arabidopsis OPS homolog, AtOPSL1 (At5g01170). All four ORFs were expressed in ops mutants under control of the OPS promoter. The...”
- “...a a a 30 a a a 20 a 10 0 in brx ops OPS::AtOPSL1 (At5g01170) AmOPSL1 AmOPSL2 in ops (under OPS promoter) a J 100 a a w/o / gaps a 75 50 with ih a c 25 0 poles l...”
- Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit
Baerenfaller, Molecular systems biology 2012 - “...2008 ). However, the mRNA levels for proteins in the TOR pathway, TOR (AT1G50030), RAPTOR1A (AT5G01170) and RAPTOR1B (AT3G08850), did not change significantly during leaf growth. The GO category organ development was also over-represented for proteins down-regulated between stages 1 and 2 (D-E-E-E). Together, our results...”
- The Arabidopsis ABA-activated kinase OST1 phosphorylates the bZIP transcription factor ABF3 and creates a 14-3-3 binding site involved in its turnover
Sirichandra, PloS one 2010 - “...1,6 At3g09070 Glycine-rich protein LRRTKSFSAS 7,60E-08 5 2,4 At2g38070 Glycine-rich protein LRRTKSFSAS 1,20E-07 8 4,3 At5g01170 Glycine-rich protein LRRTKSFSAK 2,40E-07 Metal binding proteins 4 2,3 At4g27590 Copper-binding protein LIRTSSFTWK 4,80E-07 12 6 At2g02835 Zinc ion binding protein LWRANTISIV 9,90E-07 15 8,8 At1g55915 Zinc ion binding protein...”
AT3G46990 hypothetical protein from Arabidopsis thaliana
3 alignments in 4:537 / 547 (97.6%), covering up to 69.7% of PF05340, 268.1 bits
- Overexpression of a DUF740 family gene (LOC_Os04g59420) imparts enhanced climate resilience through multiple stress tolerance in rice
Jayaraman, Frontiers in plant science 2022 - “...the control of a stress-inducible promoter AtRd29A . The ortholog of OsSRDP in Arabidopsis ( At3g46990 ), with 60% amino acid sequence homology to rice, has evidence for protein level expression and has been reported to be transcribed during seed germination, root, and silique development (...”
- “...important to note here that the function of the specific ortholog of OsSRDP in Arabidopsis, At3g46990 , has not been characterized, and no phenotype information on the insertion mutants of this gene is available yet. Though our expression analyses did confirm its expression in rice roots,...”
AT1G21830 hypothetical protein from Arabidopsis thaliana
Aligns to 3:94 / 206 (44.7%), covers 8.8% of PF05340, 29.2 bits
AT1G44608 hypothetical protein from Arabidopsis thaliana
Aligns to 1:83 / 176 (47.2%), covers 5.3% of PF05340, 22.6 bits
Or search for genetic data about PF05340 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory