Family Search for PF05542 (DUF760)

PF05542.11 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

GRMZM2G044900 uncharacterized protein LOC100383346 from Zea mays
2 alignments in 69:373 / 390 (51.5%), covering up to 100.0% of PF05542, 168.1 bits

• The dynamics of DNA methylation in maize roots under Pb stress
  Ding, International journal of molecular sciences 2014
  • “...Unknown GRMZM2G026442 0 0.13 1.47 Serine-threonine/tyrosine-protein kinase catalytic domain GRMZM2G066485 0.47 0.61 0.55 SANT/Myb domain GRMZM2G044900 0.24 0.33 10,000 Lipase, GDSL AC188195.2_FG004 0.35 0.35 0.39 Basic-leucine zipper domain GRMZM2G302405 0.14 0.23 7.01 GRAM GRMZM2G095323 2.11 2.2 3 Unknown GRMZM2G444567 10,000 10,000 10,000 K Homology domain, type...”

AT1G63610 hypothetical protein (RefSeq) from Arabidopsis thaliana
2 alignments in 88:325 / 340 (49.1%), covering up to 98.8% of PF05542, 134.9 bits

• Ectopic RING zinc finger gene from hot pepper induces totally different genes in lettuce and tobacco
  Kesawat, Molecular breeding : new strategies in plant improvement 2018
  • “...4.25 At1g43195 Uncharacterized gene 0 0 0 4.21 At2g22122 Uncharacterized gene 0 0 0 4.47 At1g63610 Uncharacterized gene 0 0 0 4.38 b. Genes down-regulated in CaRZFP1 -overexpressing T 4 generation lettuce plants At2g47850 Zinc finger CCCH domain-containing protein 32 0.90 0.54 0.43 3.62 At4g10300 RmlC-like...”

UVB31_ARATH / Q9LVJ0 UV-B-induced protein At3g17800, chloroplastic from Arabidopsis thaliana (Mouse-ear cress) (see 3 papers)
AT3G17800 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 149:274 / 421 (29.9%), covers 100.0% of PF05542, 104.2 bits

• Transcriptomic analysis reveals unique molecular factors for lipid hydrolysis, secondary cell-walls and oxidative protection associated with thermotolerance in perennial grass
  Xu, BMC genomics 2018
  • “...Uncharacterized protein At1g32220, chloroplastic 1.11 GO:0006979 biological_process response to oxidative stress 1 TRINITY_DN114953_c0_g1 UV-B-induced protein At3g17800, chloroplastic 1.22 GO:0042744 biological_process hydrogen peroxide catabolic process 3 TRINITY_DN98249_c0_g3 Thioredoxin F 1.22 TRINITY_DN100788_c0_g1 Glyoxylate/succinic semialdehyde reductase 1 1.34 TRINITY_DN115073_c1_g1 Cryptochrome-1 1.36 TRINITY_DN97981_c0_g1 Phospholipid hydroperoxide glutathione peroxidase 1 1.40 TRINITY_DN94618_c1_g1...”
• The rose (Rosa hybrida) NAC transcription factor 3 gene, RhNAC3, involved in ABA signaling pathway both in rose and Arabidopsis
  Jiang, PloS one 2014
  • “...266017_at unknown protein At2g18690 3.53 0.008 265276_at unknown protein At2g28400 3.05 0.011 258188_at unknown protein At3g17800 2.57 0.021 258275_at unknown protein At3g15760 2.47 0.031 266259_at unknown protein At2g27830 2.19 0.009 252057_at unknown protein At3g52480 2.04 0.03 Genes derived from the RhNAC3 up-regulated genes identified by the...”
• The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors
  Huang, Journal of experimental botany 2008
  • “...finger (AN1-like) family protein At3g60420 Expressed protein At1g19380 Expressed protein At5g20230 Plastocyanin-like domain-containing protein [(ATBCB)] At3g17800 Expressed protein At3g47420 Glycerol-3-phosphate transporter, putative/glycerol 3-phosphate permease, putative At5g54940 Eukaryotic translation initiation factor SUI1, putative At5g42050 Expressed protein At5g16830 Syntaxin 21 (SYP21)/PEP12 homologue [(SYP21)] At5g22000 Zinc finger (C3HC4-type RING...”
• Genome-wide analysis of gene expression reveals function of the bZIP transcription factor HY5 in the UV-B response of Arabidopsis
  Ulm, Proceedings of the National Academy of Sciences of the United States of America 2004
  • “...(1, 13) were also identified in our analysis: MEB5.2 (At3g17800, Fig. 2, Tables 1 and 11), PyroA (At5g01410, Table 1), and the negative UV-B regulator MYB4...”

slr1674 hypothetical protein (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 22:104 / 116 (71.6%), covers 97.6% of PF05542, 99.5 bits

• The role of transcriptional repressor activity of LexA in salt-stress responses of the cyanobacterium Synechocystis sp. PCC 6803
  Takashima, Scientific reports 2020
  • “...promoter region with the divergently transcribed ggpS glpD . The co-induction of gghA glpK spoU slr1674 hypA1 by disruption of lexA (Fig. 1 A) suggests polycistronic expression of these five genes. The third and fourth gene clusters are ggtBCD ( slr0529 0531 ) and ggpP ggtA...”
• Universal Molecular Triggers of Stress Responses in Cyanobacterium Synechocystis
  Mironov, Life (Basel, Switzerland) 2019
  • “...+ + + slr0095 smtA SmtA S -adenosyl methionine methyltransferase + + + + + slr1674 slr1674 Slr1674 Thermoprotector protein of PS II + + + + + + + slr1963 ocpA OCP Orange carotenoid-binding protein + + + + + slr1512 sbtA SbtA Na-dependent bicarnonate...”
• RNA-seq Profiling Reveals Novel Target Genes of LexA in the Cyanobacterium Synechocystis sp. PCC 6803
  Kizawa, Frontiers in microbiology 2016
  • “...sll1085 ), ggpP-ggtA ( slr0746 - 0747 ), and slr1670 - glpK - spoU - slr1674 - hypA1 ( slr1670 - 1675 ) in S.6803 genome (Mikkat and Hagemann, 2000 ; Klhn et al., 2010 ). RNA-seq analysis revealed that expression levels of these gene clusters...”
  • “...region of the two divergently transcribed operons, ggpS-glpD and slr1670 - glpK - spoU - slr1674 - hypA1 , both of which are highly induced in lexA . His-LexA bound to the promoter fragment of each operon (for the ggpS operon from nucleotide 1949371 to 1949186...”
• The ω subunit of RNA polymerase is essential for thermal acclimation of the cyanobacterium Synechocystis sp. PCC 6803
  Gunnelius, PloS one 2014
  • “...proteins have been suggested to affect heat responses. The clpB1 gene encoding a protease, and slr1674 (a hypothetical protein) have shown to affect rapid heat responses, whereas hik34 (encoding a histidine kinase) and hypA1 (encoding a hydrogenase formation protein) affect sustained thermotolerance of PSII, and cpcC2...”
• Identification of components associated with thermal acclimation of photosystem II in Synechocystis sp. PCC6803
  Rowland, PloS one 2010
  • “...PSII thermotolerance was affected by mutations in clpB1 , cpcC2 , hspA , htpG and slr1674 . Final PSII thermotolerance was affected by mutations in cpcC2 , hik34 , hspA and hypA1 , suggesting that these gene products play roles in long-term thermal acclimation of PSII....”
  • “...38.47 6.13 15.04 9.65 34.87 16.86 clpB1 15.70 0.75 27.66 3.20 10.79 2.70 17.33 3.75 slr1674 18.55 1.57 16.78 0.43 15.57 6.34 14.21 8.13 groEL-1 4.42 0.48 6.26 2.15 3.65 0.81 7.39 2.96 sigB 6.50 0.15 6.50 0.01 4.73 1.41 6.44 2.68 htpG 18.84 1.38 16.26...”
• DNA microarray analysis of redox-responsive genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803
  Hihara, Journal of bacteriology 2003
  • “...slr1291, ndhD2 slr1413 slr1544 slr1603 slr1641, clpB1 slr1674 slr1675, hypA1 slr1738 slr1963, water-soluble carotenoid protein slr2075, groES slr2076, groEL...”
• Global gene expression profiles of the cyanobacterium Synechocystis sp. strain PCC 6803 in response to irradiation with UV-B and white light
  Huang, Journal of bacteriology 2002
  • “...slr1397 slr1413 slr1512 slr1513 slr1544 slr1557 slr1603 slr1674 slr1676 slr1677 slr1686 slr1747 slr1894 slr1915 slr1917 slr1926 slr1930 slr1963 slr1971 slr1990...”

PMM0605 conserved hypothetical protein (NCBI) from Prochlorococcus marinus sp. MED4
Aligns to 19:101 / 112 (74.1%), covers 100.0% of PF05542, 95.0 bits

• A framework for the computational prediction and analysis of non-coding RNAs in microbial environmental populations and their experimental validation
  Lott, The ISME journal 2020
  • “...PMM0072 sufC Fe-S cluster assembly ATPase Transport and binding proteins 0.001447766 5.32535 726 732 tx50_rs03220 PMM0605 DUF760 domain-containing protein Hypothetical 0.001670637 8.43848 7 17 tx50_rs02615 PMM0485 Hypothetical 0.001817716 7.53348 75 90 tx50_rs05485 PMM1943 Hypothetical 0.002320793 7.11648 2 10 tx50_rs01665 PMM0320 minE cell division topological specificity factor...”

sync_1524 hypothetical protein (NCBI) from Synechococcus sp. CC9311
Aligns to 22:104 / 120 (69.2%), covers 98.8% of PF05542, 88.8 bits

• Selection in coastal Synechococcus (cyanobacteria) populations evaluated from environmental metagenomes
  Tai, PloS one 2011
  • “...genes involved in transport, secretion, or motility functions that were well represented in the metagenome. Sync_1524, a possible porin gene, sync_2281, a large-conductance mechanosensitive channel, and sync_2588, the gene for a possible ABC transporter ATP-binding component all had elevated dN/dS at their N-termini ( Figures 6A,...”

AT5G48590 hypothetical protein (RefSeq) from Arabidopsis thaliana
2 alignments in 112:325 / 344 (59.6%), covering up to 98.8% of PF05542, 88.6 bits

• The circadian clock and defence signalling in plants
  Sharma, Molecular plant pathology 2015 (secret)
• Reactive oxygen species and transcript analysis upon excess light treatment in wild-type Arabidopsis thaliana vs a photosensitive mutant lacking zeaxanthin and lutein
  Alboresi, BMC plant biology 2011
  • “...(TPPA) -1,13 248402_at AT5G52100 dihydrodipicolinate reductase family protein -1,13 256728_at AT3G25660 glutamyl-tRNA(Gln) amidotransferase -1,12 248663_at AT5G48590 expressed protein -1,12 245984_at AT5G13090 expressed protein -1,12 250663_at AT5G07110 prenylated rab acceptor (PRA1) -1,11 254011_at AT4G26370 antitermination NusB domain -1,10 261439_at AT1G28395 expressed protein -1,10 259889_at AT1G76405 expressed protein...”

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