Family Search for PF05787 (DUF839)
PF05787.13 hits 44 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
alr4794 hypothetical protein (NCBI ptt file) from Nostoc sp. PCC 7120
Aligns to 83:684 / 728 (82.7%), covers 99.0% of PF05787, 716.6 bits
- The Anabaena sp. PCC 7120 Exoproteome: Taking a Peek outside the Box
Oliveira, Life (Basel, Switzerland) 2015 - “...Alr4745 Dihydrolipoyl dehydrogenase N 2 , NO 3 , NH 4 + Energy metabolism - Alr4794 Alr4794 protein NO 3 , NH 4 + Conserved hypothetical protein Anabaena Alr4853 Aspartate aminotransferase N 2 Amino acid biosynthesis - Alr4907 Ornithine carbamoyltransferase N 2 , NO 3 ,...”
VCA0033 hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 55:591 / 624 (86.1%), covers 99.8% of PF05787, 701.5 bits
SMc02634 HYPOTHETICAL TRANSMEMBRANE PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 83:628 / 667 (81.9%), covers 99.8% of PF05787, 687.2 bits
- Sinorhizobium meliloti phospholipase C required for lipid remodeling during phosphorus limitation
Zavaleta-Pastor, Proceedings of the National Academy of Sciences of the United States of America 2010 - “...smb20094, and smc04448. Also, four genes (smc00620, smc02634, smc01907, and smc00171) encoding putative phosphatases are strongly induced under Pi limitation in...”
- “...PHO02634 (deficient in smb20094, smc04448, smc00620, or smc02634, respectively) degraded zwitterionic phospholipids similarly to the wild-type and formed DGTS...”
- Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria
Yuan, Nucleic acids research 2006 - “...CTGTCATAAATGTTTCAC 115 0.72 9 SMc02174 Overlap a TTGTGAACGATCTGTCGC 76 0.36 Hypothetical transmembrane protein *1 10 Smc02634 Overlap a,b TTGTCGCAGAGCTGTCAT 77 0.56 phoA3 , putative alkaline phosphatase *2 11 Smc03124 Overlap a,b CTGTCACGAAAGTTTCAC 93 0.44 Putative ABC transporter periplasmic binding *5 12 SMc03243 Overlap a,b CTGTAAAGCCGCTGACAT 64...”
- “...alkaline phosphatase CTGTCGCCAAACCGTCCG 97 0.37 2 Smc01907 CTGTCATCCAGCTGTTAC 82 0.72 S.meliloti Hypothetical transmembrane protein 3 Smc02634 TTGTCGCAGAGCTGTCAT 77 0.56 S.meliloti Hypothetical protein, phosphatase 4 Atu1263 ATGTCATGCCACTGTCAC 51 0.59 A.tumefaciens Conserved hypothetical protein 5 BMEII0655 CCGTCATTCCTGTGTAAT 53 0.38 B.melitensis phoA , alkaline phosphatase 6 BR1200 CTGTCACACGCCTGCAAT 80...”
- sinI- and expR-dependent quorum sensing in Sinorhizobium meliloti
Gao, Journal of bacteriology 2005 - “...SMc02094 SMc02156 SMc02365 SMc02378 SMc02465 SMc02562 SMc02562 SMc02562 SMc02634 SMc02689 SMc02857 SMc02857 SMc02896 SMc02898 SMc03061 52 23 50 16 22 18 49 38...”
- “...(MocB, IlvE1, KdsB, and the protein corresponding to Smc02634) were significantly affected by the addition of C14-HSL and/or C16:1 HSL (Table 2). These results...”
- Role of the regulatory gene rirA in the transcriptional response of Sinorhizobium meliloti to iron limitation
Chao, Applied and environmental microbiology 2005 - “...SMc01319 SMc01326 SMc01469 SMc01842 SMc01847 SMc02392 SMc02634 SMc03004 SMc03005 SMc03007 SMc03008 SMc03009 SMc03012 SMc03013 SMc03017 SMc03021 SMc03022...”
- Proteomic analysis of wild-type Sinorhizobium meliloti responses to N-acyl homoserine lactone quorum-sensing signals and the transition to stationary phase
Chen, Journal of bacteriology 2003 - “...SMc02408 SMc02495 SMc02499 SMc02508 SMc02509 SMc02510 SMc02634 SMc02692 SMc02774 SMc02873 SMc02857 SMc02857 SMc02857 SMc03061 SMa0312 SMc03157 SMc03233 SMc03786...”
PA2635 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 84:636 / 672 (82.3%), covers 99.8% of PF05787, 653.0 bits
- Tobramycin reduces key virulence determinants in the proteome of Pseudomonas aeruginosa outer membrane vesicles
Koeppen, PloS one 2019 - “...FliC, FliD, LasA, LasB, LipA, PA2939, PasP, PepA, Piv, PlcN Flagellar FliC, FliD Unknown PA1324, PA2635, PA3922, PA4139, PA4140 Subcellular localization annotations were retrieved from Pseudomonas Genome Database ( http://www.pseudomonas.com/localizations/list ). Proteins can be associated with multiple subcellular localizations. Differential abundance of proteins in Tobi OMVs...”
- Genome wide identification and experimental validation of Pseudomonas aeruginosa Tat substrates
Gimenez, Scientific reports 2018 - “...SRR S F IR LAAGTVGATVATSML PSSIQA* PA14_22560 PA3222 MN RR SA L AALHGGALLFGLT GVFGKLASA* PA14_30040 PA2635 MSLEKKDAILFGDGDELPSNHSNNPHMNDLIAGLG RR Q 8V L AGGAALGALAFLG VALPASA* PA14_31820 PA2531 MPAL SRR S F VTLTALASSSILLS PRAFA* PA14_33720 PA2394 d MND RR T FLK QAGILAAGL PLLSAAQSLRA* PA14_33740 PA2392 d MTV SRR G...”
- “...RR SA L AALHGGALLFGLT GVFGKLASA* Permease None predicted Membrane proteins Unknown 31 This work PA14_30040 PA2635 MSLEKKDAILFGDGDELPSNHSNNPHMNDLIAGLG RR Q V L AGGAALGALAFLG VALPASA* Hypothetical protein None predicted Hypothetical, unclassified, unknown Unknown 73.8 This work PA14_34510 PA2328 MCLDDPTH SRR DI LK LAALLSAAGAL PLLSSLQARA* Hypothetical protein None predicted...”
- Reorganization of gene network for degradation of polycyclic aromatic hydrocarbons (PAHs) in Pseudomonas aeruginosa PAO1 under several conditions
Yan, Journal of applied genetics 2017 - “...Interestingly, it did not act alone, but with eight other genes (PA0470, PA0863, PA1417, PA2494, PA2635, PA3502, PA4649, and PA4660), i.e., these eight genes changed their membership from the light green cluster to the black one ( Supplementary materials ). Of these eight genes, PA0470 encodes...”
- “...multidrug efflux transporter MexF, and PA4660 encodes a deoxyribodipyrimidine photolyase, while the functions of PA1417, PA2635, PA3502, and PA4649 are unknown. Therefore, we can not only postulate that PA0247 initiation needs the transporter, receptor, oxidoreductase and photolyase, but also have the clue for the function of...”
- Pseudomonas aeruginosa GroEL Stimulates Production of PTX3 by Activating the NF-κB Pathway and Simultaneously Downregulating MicroRNA-9
Shin, Infection and immunity 2017 - “...used as a control (CON). thetical proteins (PA0572 and PA2635). To evaluate their potential to induce expression of PTX3, these proteins (but not PlcN) were...”
- “...to treat THP-1 cells. We were unable to purify PA2635 due to the formation of inclusion bodies. In these assays, GroEL was identified as the most active...”
- Coexistence and within-host evolution of diversified lineages of hypermutable Pseudomonas aeruginosa in long-term cystic fibrosis infections
Feliziani, PLoS genetics 2014 - “...6 2 4 PA0788 5 0 5 PA2077 5 1 4 PA2151 5 2 3 PA2635 5 1 4 PA3728 5 2 3 PA4735 5 3 2 PA4836 5 1 4 a The categories used for functional classification were as described in the The Pseudomonas aeruginosa...”
- New microbicidal functions of tracheal glands: defective anti-infectious response to Pseudomonas aeruginosa in cystic fibrosis
Bastonero, PloS one 2009 - “...PA4761 DnaK protein 68 ++ 6 PA3319 PlcN non-hemolytic phospholipase C precursor 77 ++ 7 PA2635 Hypothetical protein PhoX, predicted phosphatase 74 ++ 8 PA0347 GlpQ glycerophosphoryl diester phosphodiesterase, periplasmic 42 ++ 9 PA5369 PstS phosphate ABC transporter, periplasmic phosphate-binding protein, PstS 34 ++ 10 and...”
- Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria
Yuan, Nucleic acids research 2006 - “...UxpA CTGTCGGATTTCTGCCAT 56 0.41 14 PA3296 TTGTCACAAGCCCGTCAT 82 0.53 P.aeruginosa phoA , alkaline phosphatase 15 PA2635 CTGTCATCGTCCCGTCGC 53 0.39 P.aeruginosa Hypothetical protein G Membrane lipids 1 SMc01848 TCGTCATCAAAGTGTAGC 47 0.41 S.meliloti Hypothetical protein ( btaA -like) 2 Atu2119 CTGTCATCAAACTGTAGC 44 0.58 A.tumefaciens Hypothetical protein ( btaA...”
- Transcriptome analysis of Pseudomonas aeruginosa after interaction with human airway epithelial cells
Frisk, Infection and immunity 2004 - “...cells PA no. Fold changea P valueb 26.2 0.010 PA2635 PA3909 PA0347 PA3280 PA0688 PA3229 PA0691 PA4351 PA0693 PA4350 PA3319 PA2494 PA3296 PA3383 PA2491 PA2493...”
- “...PA3910 (41% homology to phosphodiesterase-alkaline phosphatase), PA2635 (probable phosphatase), PA0688 (100% identical to PhoA), PA3909 (proba- ble...”
PA14_30040 putative phosphatase (NCBI) from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 84:636 / 672 (82.3%), covers 99.8% of PF05787, 652.2 bits
- Genome wide identification and experimental validation of Pseudomonas aeruginosa Tat substrates
Gimenez, Scientific reports 2018 - “...MISK SRR S F IR LAAGTVGATVATSML PSSIQA* PA14_22560 PA3222 MN RR SA L AALHGGALLFGLT GVFGKLASA* PA14_30040 PA2635 MSLEKKDAILFGDGDELPSNHSNNPHMNDLIAGLG RR Q 8V L AGGAALGALAFLG VALPASA* PA14_31820 PA2531 MPAL SRR S F VTLTALASSSILLS PRAFA* PA14_33720 PA2394 d MND RR T FLK QAGILAAGL PLLSAAQSLRA* PA14_33740 PA2392 d MTV SRR...”
- “...MN RR SA L AALHGGALLFGLT GVFGKLASA* Permease None predicted Membrane proteins Unknown 31 This work PA14_30040 PA2635 MSLEKKDAILFGDGDELPSNHSNNPHMNDLIAGLG RR Q V L AGGAALGALAFLG VALPASA* Hypothetical protein None predicted Hypothetical, unclassified, unknown Unknown 73.8 This work PA14_34510 PA2328 MCLDDPTH SRR DI LK LAALLSAAGAL PLLSSLQARA* Hypothetical protein None...”
PSF113_5402 PhoX family phosphatase from Pseudomonas fluorescens F113
Aligns to 58:600 / 631 (86.1%), covers 99.8% of PF05787, 637.0 bits
Q3K5N8 Uncharacterized protein from Pseudomonas fluorescens (strain Pf0-1)
Aligns to 58:600 / 633 (85.8%), covers 99.8% of PF05787, 629.7 bits
PSPTO0491 Tat (twin-arginine translocation) pathway signal sequence domain protein (NCBI ptt file) from Pseudomonas syringae pv. tomato str. DC3000
Aligns to 63:605 / 638 (85.1%), covers 99.8% of PF05787, 614.1 bits
Q9F2J1 Uncharacterized protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
SCO3790 hypothetical protein (NCBI) from Streptomyces coelicolor A3(2)
Aligns to 105:653 / 692 (79.3%), covers 99.8% of PF05787, 609.5 bits
- Comparative proteomic analysis of Streptomyces lividans Wild-Type and ppk mutant strains reveals the importance of storage lipids for antibiotic biosynthesis
Le, Applied and environmental microbiology 2013 - “...63 Up Up 4 4 SCO3409 SCO3790 Q9X8I9 Q9F2J1 19/4.8 75/6.2 214 244 59 33 Down Down 3 4 Inositol-5-monophosphate dehydrogenase Polynucleotide phosphorylase/...”
- Comparative proteomic analysis of Streptomyces lividans Wild-Type and ppk mutant strains reveals the importance of storage lipids for antibiotic biosynthesis
Le, Applied and environmental microbiology 2013 - “...176 229 56 63 Up Up 4 4 SCO3409 SCO3790 Q9X8I9 Q9F2J1 19/4.8 75/6.2 214 244 59 33 Down Down 3 4 Inositol-5-monophosphate dehydrogenase Polynucleotide...”
- “...are PhoX, a presumed secreted phosphatase encoded by sco3790 (31, 32), an inorganic pyrophosphatase encoded by sco0118 (33, 34), and the putative...”
- Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture
Thomas, Molecular & cellular proteomics : MCP 2012 - “...(encoded by SCO1565, glpQ1; SCO1968, glpQ2; SCO4151; and SCO3790) and two alkaline phosphatase-like proteins (SCO2068 and SCO2286) were observed only in the...”
- Extracting regulator activity profiles by integration of de novo motifs and expression data: characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor
Iqbal, Nucleic acids research 2012 - “...the high affinity phosphate transporter pst operon (SCO4139-42), SCO1393 which encodes for an acetoacetyl-CoA synthetase, SCO3790 a conserved hypothetical protein and SCO1906 a secreted protein. The activity profile has a high correlation to the three regulators PhoP (SCO4230), PhoU (SCO4228), AraC (SCO0466), ( r =0.83, 0.84...”
- Cross-talk of global nutritional regulators in the control of primary and secondary metabolism in Streptomyces
Martín, Microbial biotechnology 2011 - “...; Makarewicz etal ., 2006 ). Other genes encoding putative phosphate scavengers are SCO1906 , SCO3790 and SCO4152 . Both SCO1906 and SCO3790 encode putative secreted phosphatases (other than PhoA and PhoC) and their promoters are bound by PhoP ( RodrguezGarca etal ., 2007 ; SolaLanda...”
- “...of the alkaline phosphatases phoA and phoD , other two putative phosphatases ( SCO1906 and SCO3790 ), a putative phytase ( Apel etal ., 2007 ; SolaLanda etal ., 2008 ) and two glpQ genes ( SantosBeneit etal ., 2009b ). The DRus are boxed, and...”
- Target genes and structure of the direct repeats in the DNA-binding sequences of the response regulator PhoP in Streptomyces coelicolor
Sola-Landa, Nucleic acids research 2008 - “..., secreted alkaline phosphatase CC 1 e Coding 128 103 AA >0.25 Activation e SCO3790-1 SCO3790, putative phosphatase CC 1 Coding 79 N.D. 0D 0.165 Activation SCO4142 pstS , Pst transporter, phosphate-binding component (EE) CC 1 f Coding 114 39 A0 <0.000 Activation f SCO6169-70 SCO6169,...”
- “...ironsulphur protein), SCO1394 (a possible glycosyl hydrolase), SCO1854 (a possible integral membrane protein), SCO1906 and SCO3790 (putative phosphatases different from phoA , phoC , phoD ), SCO1993 (an unknown protein), SCO2262 (a possible oxidoreductase), SCO2620 (a probable cell division trigger factor), SCO4451 (a probable export protein),...”
- Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2)
Lian, BMC genomics 2008 - “...(Tat) dependent exported proteins ( SCO1196 , SCO1565 , SCO1633 , SCO1906 , SCO2286 , SCO3790 , SCO6691 and SCO7631 ) identified in an earlier study [ 24 ] also belonged to this category. Several other genes encoding secreted proteins, nucleases and other hypothetical proteins were...”
- “...SCO2764 Putative lipoprotein. 0.15 SCO2878 Hypothetical protein 0.32 SCO3789 Endonuclease, exonuclease, phosphatase family protein 0.10 SCO3790 Conserved hypothetical protein 0.35 SCO4139 Phosphate ABC transport system ATP-binding protein ( pstB ) 0.32 SCO4140 Phosphate ABC transport system permease protein ( pstA ) 0.36 SCO4141 phosphate ABC transport...”
- Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor
Jayapal, PloS one 2008 - “...SCO4139; PstS, SCO4142; NeuB, SCO4881; RegX3, SCO4230; a phosphate transporter, SCO4228; alkaline phosphatase, SCO2286; SCO1906; SCO3790; SCO5140 and SCO7631) were strongly correlated with PC-1 of both proteins and mRNA. These genes also generally had a high positive value along PC-2, indicating a transient up-regulatory trend. Identification...”
- The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor
Widdick, Proceedings of the National Academy of Sciences of the United States of America 2006 - “...two of the Tat-active signal peptides (SCO2286 and SCO3790) because of their unusual length; however, in silico N-terminal truncation of these signal peptides...”
- “...SCO1906 SCO2068 SCO2286 SCO2758 SCO2780 SCO2786 SCO3484 SCO3790 SCO4672 SCO6052 SCO6198 SCO6272* SCO6281* SCO6457 SCO6580 SCO6594 SCO6691 SCO7631 SCO7677...”
- More
CYA_1696 hypothetical protein (NCBI) from Synechococcus sp. JA-3-3Ab
Aligns to 73:639 / 686 (82.7%), covers 99.8% of PF05787, 604.5 bits
CYB_1988 hypothetical protein (NCBI) from Synechococcus sp. JA-2-3B'a(2-13)
Aligns to 73:639 / 682 (83.1%), covers 99.8% of PF05787, 603.1 bits
- Role of polyphosphate in thermophilic Synechococcus sp. from microbial mats
Gomez-Garcia, Journal of bacteriology 2013 - “...included periplasmic phosphatases such as PhoX (CYB_1988) and phosphate transporters (CYB_1074-CYB_1077 and CYB_1912-CYB_1915). Because the Synechococcus OS-B=...”
- “...the construct CYB_0858 CYB_2856 CYB_1493 CYB_0159 CYB_1076 CYB_1988 CYB_1794 CYB_1795 CYB_1796 CYB_1797 CYB_2082 CYB_0017 M, Y, and V are ambiguous bases...”
- Phosphorus deprivation responses and phosphonate utilization in a thermophilic Synechococcus sp. from microbial mats
Adams, Journal of bacteriology 2008 - “...regulon transcripts of OS-Ba Size Gene CYB_1198 CYB_0684 CYB_1988 CYB_1077 CYB_1915 CYB_0159 CYB_0160 CYB_1467 CYB_0164 CYB_0165 nt aa 1,349 1,727 2,048 1,076...”
- “...of gene(s) Locus tag CYB_0858 CYB_2856 CYB_1198 CYB_1988 CYB_0684 CYB_0884 CYB_1427 CYB_2320 CYB_0274 CYB_2765 CYB_1493 CYB_2082 CYB_1077-74 pstS-2, pstC-2,...”
A1C3J6 alkaline phosphatase (EC 3.1.3.1) from Pasteurella multocida (see paper)
Aligns to 70:603 / 647 (82.5%), covers 99.8% of PF05787, 596.8 bits
F5Y472 Uncharacterized protein from Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
Rta_14460 PhoX family phosphatase from Ramlibacter tataouinensis TTB310
Aligns to 60:599 / 643 (84.0%), covers 99.6% of PF05787, 592.0 bits
F5Y2Z6 Uncharacterized protein from Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
Aligns to 56:586 / 626 (84.8%), covers 99.8% of PF05787, 586.5 bits
Rta_37610 PhoX family phosphatase from Ramlibacter tataouinensis TTB310
Aligns to 63:593 / 633 (83.9%), covers 99.8% of PF05787, 586.5 bits
SPO1860 PhoX family phosphatase from Ruegeria pomeroyi DSS-3
SPO1860 twin-arginine translocation pathway signal sequence domain protein (NCBI) from Silicibacter pomeroyi DSS-3
Aligns to 67:596 / 627 (84.5%), covers 99.8% of PF05787, 586.1 bits
- Transcriptional changes underlying elemental stoichiometry shifts in a marine heterotrophic bacterium
Chan, Frontiers in microbiology 2012 - “...protein ( phnK ) 10.9 SPO0781 Phosphonate ABC transporter, periplasmic phosphonate-binding ( phnD ) 103.5 SPO1860 Alkaline phosphatase ( phoX ) 7.4 SPO1948 Phosphate ABC transporter, periplasmic binding protein ( pstS ) 47.9 SPO1949 Phosphate ABC transporter, permease protein ( pstC ) 4.7 SPO1951 Phosphate transporter...”
- “...protein 103.5 SPO1227 Hypothetical protein 3.2 SPO1504 pqqA Coenzyme PQQ biosynthesis protein A 5.1 4.7 SPO1860 Twin-arginine translocation pathway signal sequence domain-containing protein 7.4 SPO1928 Tat pathway signal sequence domain-containing protein 3.5 0.7 SPO1948 pstS Phosphate ABC transporter, periplasmic binding protein 47.9 SPO1949 pstC Phosphate ABC...”
C9Z8S0 Uncharacterized protein from Streptomyces scabiei (strain 87.22)
SCAB_44821 hypothetical protein (RefSeq) from Streptomyces scabiei 87.22
Aligns to 107:655 / 694 (79.1%), covers 99.8% of PF05787, 580.4 bits
PSE_1012 PhoX family phosphatase from Pseudovibrio sp. FO-BEG1
Aligns to 73:607 / 633 (84.5%), covers 99.8% of PF05787, 577.9 bits
CJM1_0145 PhoX family phosphatase from Campylobacter jejuni subsp. jejuni M1
Aligns to 35:562 / 593 (89.0%), covers 99.8% of PF05787, 563.9 bits
NOC_RS11470 PhoX family phosphatase from Nitrosococcus oceani ATCC 19707
Aligns to 89:681 / 718 (82.6%), covers 99.8% of PF05787, 562.5 bits
- High Synteny and Sequence Identity between Genomes of Nitrosococcus oceani Strains Isolated from Different Oceanic Gyres Reveals Genome Economization and Autochthonous Clonal Evolution
Wang, Microorganisms 2020 - “...NS58 (NONS58_RS00145), C-27 (IB75_RS17280), and AFC27 (NOC27_RS15820). Furthermore, homologs of the contiguous genes NOC_RS11465 and NOC_RS11470, encoding a PhoX family phosphatase CDS), present in all five genomes, are interrupted in the AFC132 genome by a cluster of three genes, HW44_RS10340-RS10350, predicted to encode a hypothetical protein,...”
Cj0145 hypothetical protein Cj0145 (NCBI ptt file) from Campylobacter jejuni subsp. jejuni NCTC 11168
Aligns to 35:562 / 593 (89.0%), covers 99.8% of PF05787, 561.0 bits
- Transducer-Like Protein in Campylobacter jejuni With a Role in Mediating Chemotaxis to Iron and Phosphate
Chandrashekhar, Frontiers in microbiology 2018 - “...uptake regulator (Fur) protein ( Butcher et al., 2012 ). The study also revealed that cj0145 ( phoX ), a gene located immediately downstream of tlp2, is induced in the presence of iron although the specific mechanism of regulation is still unexplored ( Butcher et al.,...”
- “...of 135 base pairs (Figure 3A ). Additionally, a previous study indicated that phoX gene (Cj0145), located immediately downstream of tlp2, is induced by iron and was also enriched in the CjFur ChIP-chip assay ( Butcher et al., 2012 ). As the tlp2 mutant is defective...”
- Avian Intestinal Mucus Modulates Campylobacter jejuni Gene Expression in a Host-Specific Manner
Looft, Frontiers in microbiology 2018 - “...mucus. Antisense RNA (fold change) Sense gene(s) (fold change) Genome position relative to antisense RNA Cj0145 (4.9) ** trxB (7.2) ** 1 trxA (4.6) trxB (7.2) ** 1 cfbpA (16) * cfbpA (19) * 0 Cj0176c (14.7) * 1 Cj0177 (137) * 2 Cj0178 (73.8) *...”
- Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population
Clark, BMC genomics 2016 - “...target Primer location Primer name Primer sequence (5-3) Inversion (93kb) cj0143c Cj-F1 ATGCTTGAGGTGCTATACTGACAC Inversion (93kb) cj0145 Cj-R1 CCTTATCCTTAAGCATAGCAGCAC Inversion (93kb) cj0261c Cj-F2 ACCCCAGTTCCACATCCTATATC Inversion (93kb) cj0263 (zupT) Cj-R2 TGGTAAATTGGCAAACTCACAG Inversion (388 kb) cj0261c CjInv5F ACCCCAGTTCCACATCC Inversion (388 kb) cj15621563 CjInv5R AACCCATCGACTTCATTTG Plasmid cpp50 cpp50tetOF1 GAACTTTACTTGCACGGAATGGAG Plasmid...”
- The Campylobacter jejuni RacRS two-component system activates the glutamate synthesis by directly upregulating γ-glutamyltranspeptidase (GGT)
van, Frontiers in microbiology 2015 - “...three independent experiments. Gel Mobility Shift Assay The promoter regions upstream of ggt , phoX (Cj0145), and Cj0200c were amplified by PCR using Dreamtaq polymerase (Thermo) and one of the primers sets GGTpromDIG/GGT204, GGTpromDIG/GGT104, GGTpromDIG/GGT69, GGTpromDIG/GGT35, Cj145F/CJ0145RDIG, and Cj200F/Cj200RDIG, respectively, ( Table 2 ) and Cj...”
- It takes two to tango: two TatA paralogues and two redox enzyme-specific chaperones are involved in the localization of twin-arginine translocase substrates in Campylobacter jejuni
Liu, Microbiology (Reading, England) 2014 - “...TatATatC systems ( Goosens et al. , 2014 ). In C. jejuni , alkaline phosphatase (Cj0145) and the nitrate reductase NapA subunit were the first proteins shown to be TAT substrates (in strain 81116; van Mourik et al. , 2008 ). In our previous study (...”
- “...system. Of the TAT substrate proteins in C. jejuni , the alkaline phosphatase encoded by cj0145 (PhoX; van Mourik et al. , 2008 ) is unique in being a hydrolytic enzyme that requires calcium ions but otherwise has no known cofactor. PhoX may be an example...”
- Evaluation of procedures for outer membrane isolation from Campylobacter jejuni
Hobb, Microbiology (Reading, England) 2009 - “...sequence. Similarly, aminopeptidase C is also not encoded in the genome sequence. Although alkaline phosphatase (Cj0145), hippurate hydrolase (Cj0985c), succinate dehydrogenase (Cj0437-9) and lactate dehydrogenase (Cj1167) are encoded in the NCTC 11168 genome sequence, these enzymic assays are either not sensitive enough to differentiate subcellular fractions...”
- Identification of Campylobacter jejuni genes contributing to acid adaptation by transcriptional profiling and genome-wide mutagenesis
Reid, Applied and environmental microbiology 2008 - “...pstSCA as well as a number of other genes (Cj0145, pstB, and the Cj0727-Cj0733 operon) (91), that were not differentially expressed in response to growth at pH...”
SYNPCC7002_A0893 phosphatase (RefSeq) from Synechococcus sp. PCC 7002
Aligns to 71:575 / 611 (82.7%), covers 97.3% of PF05787, 518.5 bits
- Transcription Profiling of the Model Cyanobacterium Synechococcus sp. Strain PCC 7002 by Next-Gen (SOLiD™) Sequencing of cDNA
Ludwig, Frontiers in microbiology 2011 - “..., pstC ) also increased two- to four-fold. Furthermore, transcript levels for a predicted phosphatase (SYNPCC7002_A0893) and alkaline phosphatase (SYNPCC7002_A2352) increased about 10-fold. Transcript levels for all of these genes were nearly constant at lower cell densities. Collectively, the results at higher cell densities resembled microarray...”
- “...Phosphate import ATP-binding protein SYNPCC7002_A2285 1.49 1.18 1.07 4.21 pstC Phosphate ABC transporter, permease protein SYNPCC7002_A0893 0.60 0.61 1.23 11.20 Predicted phosphatase SYNPCC7002_A2352 1.14 0.55 0.78 10.75 Alkaline phosphatase SYNPCC7002_A1821 0.93 2.03 1.90 5.20 nblA Putative phycobilisome degradation protein The ratio of relative transcript abundance at...”
SO2385 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 79:648 / 685 (83.2%), covers 99.8% of PF05787, 512.5 bits
- Mislocalization of Rieske protein PetA predominantly accounts for the aerobic growth defect of Tat mutants in Shewanella oneidensis
Luo, PloS one 2013 - “...flavocytochrome c flavin subunit, putative P SO1429 dmsA dimethyl sulfoxide reductase, molybdopterin-binding subunit, DmsA OM SO2385 phoX monomeric alkaline phosphatase, PhoX E SO3048 iorB isoquinoline 1-oxidoreductase, molybdopterin-binding subunit, IorB P SO3058 flavocytochrome c, flavin subunit P SO3301 flavocytochrome c, flavin subunit IM SO3791 peptidase, M19 family...”
- Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction
Pinchuk, Applied and environmental microbiology 2008 - “...of seven proteins (SO0990, SO1221, SO1560, SO1844, SO2001, SO2385, and SO3565) were related to P or DNA/nucleotide metabolism. Among these, SO1844 is predicted...”
- “...cells grown on Na2HPO4. The protein encoded by SO2385, originally annotated as a hypothetical protein, shares 42% identity with the recently discovered PhoX...”
- Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH
Leaphart, Journal of bacteriology 2006 - “...so1726 so1762 so1813 so1844 so1975 so2001 so2002 so2101 so2385 so2519 so2570 so3432 so3433 so3687 so4195 so4405 so4466 Gene product description 1638 NOTES same...”
VPA0179 hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 73:641 / 678 (83.9%), covers 99.8% of PF05787, 507.1 bits
PPUBIRD1_1093 PhoX family phosphatase from Pseudomonas putida BIRD-1
Aligns to 84:653 / 691 (82.5%), covers 99.8% of PF05787, 481.7 bits
Tery_3845 protein of unknown function DUF839 (NCBI) from Trichodesmium erythraeum IMS101
Aligns to 77:713 / 786 (81.0%), covers 97.9% of PF05787, 472.8 bits
- Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum
Frischkorn, Frontiers in microbiology 2019 - “...the gene encoding the phosphonate binding protein, phnD (Tery_4993), and the alkaline phosphatase genes phoX (Tery_3845) and phoA (Tery_3467) ( Su et al., 2007 ; Orchard et al., 2009 ) ( Table 1 ). Here, sphR (Tery_2902) gene expression was significantly higher in the -P treatment...”
- Mechanisms of increased Trichodesmium fitness under iron and phosphorus co-limitation in the present and future ocean
Walworth, Nature communications 2016 - “...and PhnM), inorganic phosphate (P i ) binding (SphX) and one protein of unknown function (Tery_3845) containing the P response regulator SphR motif, which is an orthologue to PhoB in E. coli 34 . In contrast, the high-affinity P i uptake subunits of the Pst transporter...”
ABAYE3309 hypothetical protein (RefSeq) from Acinetobacter baumannii AYE
Aligns to 82:686 / 730 (82.9%), covers 99.8% of PF05787, 470.8 bits
Rta_37000 PhoX family phosphatase from Ramlibacter tataouinensis TTB310
F5Y248 Uncharacterized protein from Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
Aligns to 82:700 / 756 (81.9%), covers 99.8% of PF05787, 464.1 bits
- In Vitro and in Silico Evidence of Phosphatase Diversity in the Biomineralizing Bacterium Ramlibacter tataouinensis
Skouri-Panet, Frontiers in microbiology 2017 - “...PhoX1 Rta_14460 R 1514607 1512676 109 21 PhoX2 Rta_37610 R 4006412 4004532 74* 200 PhoX3 Rta_37000 R 3936191 3933921 114 188 PhoB [96, 81] 5.3e-05 Fur [18, 1] 2.3e-05 PhoX4 Rta_01350 R 134200 132824 416 48 FadR [173, 158] 1.7e-05 Cra [149, 132] 5.7e-05 FhlA [125,...”
- In Vitro and in Silico Evidence of Phosphatase Diversity in the Biomineralizing Bacterium Ramlibacter tataouinensis
Skouri-Panet, Frontiers in microbiology 2017 - “...(6.3) PhoX2 F5Y2Z6 626 Non-cytoplasmic L = 50, Tat signal 67.2 (62.3) 9.3 (9.2) PhoX3 F5Y248 756 Non-cytoplasmic L = 67, Tat signal 80.4 (73.7) 5.4 (5.6) PhoX4 F5Y3B1 458 Non-cytoplasmic L = 31, Tat signal 48.9 (45.7) 5.3 (4.9) Molecular weight (MW) and isoelectric point...”
MCR_0920 PhoX family phosphatase from Moraxella catarrhalis BBH18
Aligns to 71:666 / 707 (84.3%), covers 99.8% of PF05787, 452.6 bits
A1S_0462 putative phosphatase (RefSeq) from Acinetobacter baumannii ATCC 17978
2 alignments in 1:639 / 683 (91.5%), covering up to 60.5% of PF05787, 447.8 bits
- Mucin acts as a nutrient source and a signal for the differential expression of genes coding for cellular processes and virulence factors in Acinetobacter baumannii
Ohneck, PloS one 2018 - “...protein A1S_3174 -5.393271807 0.000347121 Bacterioferritin-associated ferredoxin A1S_3339 -2.168086854 0.036495615 Ferrichrome-iron receptor Phosphate acquisition and metabolism A1S_0462 -4.856772439 4.37285E -05 Phosphatase A1S_0463 -21.07140251 3.86471E -14 Alkaline phosphatase A1S_1662 -2.941837975 0.000264374 Histidine phosphatase super family protein A1S_2445 -3.416948938 8.53187E -07 Phosphate import ATP-binding protein PstB A1S_2446 -13.40837622 8.60938E...”
- “...metabolism ( Table 2 ). It down-regulates the expression of genes coding for phosphatase activity (A1S_0462, A1S_0463, A1S_2677, A1S_2749), as well as the predicted operons A1S_2445-A1S_2448 and A1S_3374-A1S_3376, which code for potential phosphate transport and regulatory functions, respectively. In summary, the RNA-Seq data are consistent with...”
- genetic determinants of intrinsic colistin tolerance in Acinetobacter baumannii
Hood, Infection and immunity 2013 - “...Gene Gene A1S_2445 A1S_2444 A1S_3030 A1S_0462 High-affinity phosphate transport protein (PstB) Putative periplasmic protease Phosphate-inducible protein,...”
LB061 hypothetical protein (RefSeq) from Leptospira interrogans serovar lai str. 56601
Aligns to 42:501 / 532 (86.5%), covers 99.8% of PF05787, 402.9 bits
SYNW1799 conserved hypothetical protein (VIMSS) from Synechococcus sp. WH 8102
Aligns to 60:651 / 716 (82.7%), covers 98.5% of PF05787, 326.4 bits
- Proteomic responses of oceanic Synechococcus WH8102 to phosphate and zinc scarcity and cadmium additions
Cox, Frontiers in microbiology 2013 - “...SYNW2390 putative alkaline phosphatase/5 nucleotidase, and SNW2391 putative alkaline phosphatase ( phoA ). In addition, SYNW1799 is an alkaline phosphatase ( phoX ) (Kathuria and Martiny, 2011 ). Alkaline phosphatases vary in cellular location and associated metal ions. Two alkaline phosphatases purified from different strains of...”
- “...but was inhibited by Mn 2+ (Wagner et al., 1995 ). Recent experimentation on PhoX (SYNW1799) overexpressed in E. coli have shown enhanced enzyme activity in the presence of Ca, leading the authors to conclude that bacterial lineages with the presence of phoX in the genome...”
SCO6052 hypothetical protein (NCBI) from Streptomyces coelicolor A3(2)
2 alignments in 46:454 / 465 (88.0%), covering up to 70.4% of PF05787, 322.0 bits
SCAB_20641 hypothetical protein (RefSeq) from Streptomyces scabiei 87.22
C9YVU0 Putative secreted protein from Streptomyces scabiei (strain 87.22)
2 alignments in 40:443 / 455 (88.8%), covering up to 70.8% of PF05787, 306.1 bits
SCO1906 secreted protein (NCBI) from Streptomyces coelicolor A3(2)
2 alignments in 61:475 / 490 (84.7%), covering up to 70.8% of PF05787, 304.4 bits
- Extracting regulator activity profiles by integration of de novo motifs and expression data: characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor
Iqbal, Nucleic acids research 2012 - “...operon (SCO4139-42), SCO1393 which encodes for an acetoacetyl-CoA synthetase, SCO3790 a conserved hypothetical protein and SCO1906 a secreted protein. The activity profile has a high correlation to the three regulators PhoP (SCO4230), PhoU (SCO4228), AraC (SCO0466), ( r =0.83, 0.84 and 0.67, respectively). It is known...”
- Cross-talk of global nutritional regulators in the control of primary and secondary metabolism in Streptomyces
Martín, Microbial biotechnology 2011 - “...., 2006 ; Makarewicz etal ., 2006 ). Other genes encoding putative phosphate scavengers are SCO1906 , SCO3790 and SCO4152 . Both SCO1906 and SCO3790 encode putative secreted phosphatases (other than PhoA and PhoC) and their promoters are bound by PhoP ( RodrguezGarca etal ., 2007...”
- “...the promoters of the alkaline phosphatases phoA and phoD , other two putative phosphatases ( SCO1906 and SCO3790 ), a putative phytase ( Apel etal ., 2007 ; SolaLanda etal ., 2008 ) and two glpQ genes ( SantosBeneit etal ., 2009b ). The DRus are...”
- Target genes and structure of the direct repeats in the DNA-binding sequences of the response regulator PhoP in Streptomyces coelicolor
Sola-Landa, Nucleic acids research 2008 - “...3 conserved DRu SCO0033-4 SCO0034, unknown CCC 1 g Non-coding 127 N.D. 0D 0.034 Activation SCO1906 SCO1906, putative phosphatase CCC 1 Coding 92 N.D. 00 > 0.25 N.D. SCO4261-3 h SCO4261, possible response regulator CCC 1 g Non-coding 43 N.D. aA 0.088 Repression C. Class III:...”
- “...(a putative ironsulphur protein), SCO1394 (a possible glycosyl hydrolase), SCO1854 (a possible integral membrane protein), SCO1906 and SCO3790 (putative phosphatases different from phoA , phoC , phoD ), SCO1993 (an unknown protein), SCO2262 (a possible oxidoreductase), SCO2620 (a probable cell division trigger factor), SCO4451 (a probable...”
- Genome-wide transcriptome analysis reveals that a pleiotropic antibiotic regulator, AfsS, modulates nutritional stress response in Streptomyces coelicolor A3(2)
Lian, BMC genomics 2008 - “...genes encoding twin-arginine translocation (Tat) dependent exported proteins ( SCO1196 , SCO1565 , SCO1633 , SCO1906 , SCO2286 , SCO3790 , SCO6691 and SCO7631 ) identified in an earlier study [ 24 ] also belonged to this category. Several other genes encoding secreted proteins, nucleases and...”
- “...SCO1565 Putative glycerophosphoryl diester phosphodiesterase 0.46 SCO1633 Tat dependent secreted protein ( tatA ) 0.23 SCO1906 Probable Tat dependent secreted protein 0.40 SCO1968 Glycerophosphoryl diester phosphodiesterase ( glpQ ) 0.52 SCO1969 Putative DNA-methyltransferase 0.20 SCO2068 Putative secreted alkaline phosphatase 0.28 SCO2286 Putative Tat-dependent secreted alkaline phosphatase...”
- Uncovering genes with divergent mRNA-protein dynamics in Streptomyces coelicolor
Jayapal, PloS one 2008 - “...(PstB, SCO4139; PstS, SCO4142; NeuB, SCO4881; RegX3, SCO4230; a phosphate transporter, SCO4228; alkaline phosphatase, SCO2286; SCO1906; SCO3790; SCO5140 and SCO7631) were strongly correlated with PC-1 of both proteins and mRNA. These genes also generally had a high positive value along PC-2, indicating a transient up-regulatory trend....”
- The twin-arginine translocation pathway is a major route of protein export in Streptomyces coelicolor
Widdick, Proceedings of the National Academy of Sciences of the United States of America 2006 - “...SCO1172 SCO1196 SCO1356* SCO1432 SCO1565 SCO1590 SCO1639 SCO1906 SCO2068 SCO2286 SCO2758 SCO2780 SCO2786 SCO3484 SCO3790 SCO4672 SCO6052 SCO6198 SCO6272*...”
alr0132 hypothetical protein (NCBI ptt file) from Nostoc sp. PCC 7120
Aligns to 42:431 / 444 (87.8%), covers 99.8% of PF05787, 292.1 bits
Rta_01350 DUF839 domain-containing protein from Ramlibacter tataouinensis TTB310
F5Y3B1 Uncharacterized protein from Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310)
2 alignments in 57:444 / 458 (84.7%), covering up to 70.6% of PF05787, 222.7 bits
XP_001703098 phosphate-repressible alkaline phosphatase from Chlamydomonas reinhardtii
2 alignments in 145:1168 / 1373 (63.1%), covering up to 70.4% of PF05787, 145.7 bits
SCAB_62211 hypothetical protein (RefSeq) from Streptomyces scabiei 87.22
C9ZAU3 Putative secreted protein from Streptomyces scabiei (strain 87.22)
3 alignments in 94:367 / 386 (70.5%), covering up to 22.3% of PF05787, 124.2 bits
BCAL1083 putative exported alkaline phosphatase (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 150:606 / 654 (69.9%), covers 60.7% of PF05787, 80.1 bits
- Transcriptional responses of Burkholderia cenocepacia to polymyxin B in isogenic strains with diverse polymyxin B resistance phenotypes
Loutet, BMC genomics 2011 - “...15.2 20.7 BCAM2453 (Redoxin) 40.5 6.2 Genes differentially regulated in RSF34 4000B compared to RSF34 BCAL1083 (Exported alkaline phosphatase) -16.7 -3.2 BCAL1213 (2-oxoisovalerate dehydrogenase subunit) 29.9 19.7 BCAL1270 (Phosphate transport, periplasmic) -23.5 -17.9 BCAM0537 (Serine peptidase) -28.2 -4.1 BCAM0855 (UDP-glucose dehydrogenase) -5.0 -4.2 BCAM2195 (AMP-binding enzyme)...”
- “...cluster ( BCAL1270 to BCAL1276 ) predicted to encode a phosphate ABC transport system and BCAL1083 , which encodes a predicted exported alkaline phosphatase. qRT-PCR analysis of representative genes from these clusters ( BCAL1213 , BCAL2195 , BCAL1270 , and BCAL1083 ) confirmed these patterns of...”
A1S_0463 putative alkaline phosphatase (RefSeq) from Acinetobacter baumannii ATCC 17978
Aligns to 161:643 / 699 (69.1%), covers 73.3% of PF05787, 66.8 bits
AKJ12_RS09730 DUF839 domain-containing protein from Xanthomonas arboricola pv. juglandis
Aligns to 163:606 / 651 (68.2%), covers 61.1% of PF05787, 62.2 bits
- Proteome Analysis of Walnut Bacterial Blight Disease
H, International journal of molecular sciences 2020 - “...(33); two esterases (AKJ12_RS20070 and AKJ12_RS13810); endoglucanase (AKJ12_RS08070); two phospholipases (AKJ12_RS07015 and AKJ12_RS03905); five phosphatases (AKJ12_RS09730, AKJ12_RS09895, AKJ12_RS11635, AKJ12_RS05780, and AKJ12_RS13650); alpha-xylosidase (AKJ12_RS09825); xylose isomerase (AKJ12_RS20500); four hydrolases (AKJ12_RS18195, AKJ12_RS14795, AKJ12_RS12205, and AKJ12_RS12930); four aminopeptidases (AKJ12_RS15095, AKJ12_RS13855, AKJ12_RS05625, and AKJ12_RS04085); and biotin carboxylase (AKJ12_RS08585). In addition,...”
PXO_00684 alkaline phosphatase (RefSeq) from Xanthomonas oryzae pv. oryzae PXO99A
Aligns to 142:595 / 630 (72.1%), covers 70.8% of PF05787, 60.3 bits
XOO2357 alkaline phosphatase (NCBI) from Xanthomonas oryzae pv. oryzae KACC10331
Aligns to 222:664 / 709 (62.5%), covers 60.9% of PF05787, 58.5 bits
Or search for genetic data about PF05787 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory