Family Search for PF05957 (DUF883)

PF05957.13 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA3040 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
PA14_24770 hypothetical protein (NCBI) from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 12:109 / 109 (89.9%), covers 100.0% of PF05957, 120.5 bits

• Species-specific recruitment of transcription factors dictates toxin expression
  Trouillon, Nucleic acids research 2020
  • “...an operon involved in secondary messenger regulation. In P. aeruginosa , these two operons ( PA3040 to PA3045 ) are contiguous (Figure 6C ) while exlBA is found in another unrelated location, along with a P. aeruginosa -specific sequence upstream of exlBA containing the promoter encompassing...”
• Proteome profiling of Pseudomonas aeruginosa PAO1 identifies novel responders to copper stress
  Wright, BMC microbiology 2019
  • “...[Class 3] Class 4 PA5312 2.14 0.008 7 Aldehyde dehydrogenase Cytoplasmic [Class 3] Class 2 PA3040 2.21 0.002 4 Conserved hypothetical protein Unknown [Class 3]; Outer Membrane Vesicle [Class 1] Class 4 PA2345 2.35 0.002 6 Conserved hypothetical protein Unknown (This protein may have multiple localization...”
• Comparative systems biology analysis to study the mode of action of the isothiocyanate compound Iberin on Pseudomonas aeruginosa
  Tan, Antimicrobial agents and chemotherapy 2014
  • “...PA2570 PA2573 PA2587 PA2588 PA2717 PA2788 PA2815 PA2920 PA3040 PA3118 PA3155 glgP PA3305.1 PA3326 PA3327 PA3328 PA3329 PA3330 PA3331 PA3332 PA3333 PA3334 PA3346...”
• The Pseudomonas aeruginosa CreBC two-component system plays a major role in the response to β-lactams, fitness, biofilm growth, and global regulation
  Zamorano, Antimicrobial agents and chemotherapy 2014
  • “...PA5054 PA0465 PA0466 PA0887 PA1123 PA1183 PA1557 PA3013 PA3040 PA3049 PA3284 PA3790 PA3841 PA4525 PA4587 P. aeruginosa CreBC System TABLE 5 Gene loci showing...”
• LTQ-XL mass spectrometry proteome analysis expands the Pseudomonas aeruginosa AmpR regulon to include cyclic di-GMP phosphodiesterases and phosphoproteins, and identifies novel open reading frames
  Kumari, Journal of proteomics 2014
  • “...R.TphosLFDDPLFVRTGR.S PA2735 probable restriction-modification system protein K.YphosRDVILPFTVLR.R PA2744 threonyl-tRNA synthetase K.KEAADFIKLTLQVYphosR.D PA2950 hypothetical protein R.ADYphosKELQPEVQSRVEELWDK.V PA3040 conserved hypothetical protein R.GKIHDSLKRARDTphosLR.D PA3168 DNA gyrase subunit A K.GQQLISphosMLIPESGAQILTASER.G PA3227 peptidyl-prolyl cis-trans isomerase A R.NGFADVPSphosDDVVILSAKR.L PA3313 hypothetical protein K.ELKVSphosAIPDEAPTELLR.K PA3552 ArnB K.NLTphosCAEGAMFVSDDSALAERVR.R PA3567 probable oxidoreductase R.DLLVEVRAISVNPVDTphosK.V PA3659 probable aminotransferase...”
• Identification of genes in the σ²² regulon of Pseudomonas aeruginosa required for cell envelope homeostasis in either the planktonic or the sessile mode of growth
  Wood, mBio 2012
  • “...caused constitutive P algD expression only during planktonic growth. In contrast, mutations in PA2717, PA0567, PA3040, and PA0920 caused constitutive P algD expression only in the sessile/biofilm mode of growth. This provides evidence that the 22 stimulon for cell envelope homeostasis overlaps with biofilm control mechanisms....”
  • “...PA2177 d Predicted sensor response hybrid, PAS domain 2.2/<2 99:101:244 PA2717 Cpo, chloroperoxidase <2/14.4 ND PA3040 d Hypothetical, DUF883 family 7.1/6.2 1,352:1,073:4,148 PA3459 d Predicted glutamine amidotransferase 4.4/<2 402:415:839 PA3691 Hypothetical, predicted lipoprotein 15.7/17.8 608:13:2,216 PA3795 d Predicted oxidoreductase 5.2/8.8 707:605:1,593 PA3819 SlyB homolog, outer membrane...”
• Comparisons of Two Proteomic Analyses of Non-Mucoid and Mucoid Pseudomonas aeruginosa Clinical Isolates from a Cystic Fibrosis Patient
  Rao, Frontiers in microbiology 2011
  • “...1.73 0.0004 1.81 88 PA0552 Phosphoglycerate kinase Pgk 5 1.74 0.0555 1.83 0.0016 1.78 119 PA3040 Probable DNA-binding protein 5 1.90 0.0051 1.47 0.0000 1.68 61 PA0962 Probable DNA-binding stress protein 8 1.56 0.0562 1.40 0.0018 1.48 128 PA1777 Outer-membrane protein OprF precursor 4 1.61 0.0397...”
• Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo
  Huse, mBio 2010
  • “...) Aconitase Increase PA1592 Hypothetical protein Increase PA2485 Hypothetical protein Increase PA2779 Hypothetical protein Increase PA3040 Conserved hypothetical protein Increase PA3691 Hypothetical protein Increase PA4876 ( osmE ) Osmotically inducible lipoprotein Increase PA4880 Probable bacterioferritin Increase PA5060 ( phaF ) Polyhydroxyalkanoate synthesis protein Increase PA5178 Conserved...”
• More
• The Core Proteome of Biofilm-Grown Clinical Pseudomonas aeruginosa Isolates
  Erdmann, Cells 2019
  • “...16S rRNA-processing protein RimM 3.08 bf PA14_18670 bfrB bacterioferritin 3.12 pl PA14_64520 bacterioferritin 3.15 pl PA14_24770 hypothetical protein 3.26 pl PA14_68260 c4-dicarboxylate-binding protein 3.53 pl PA14_54430 algU RNA polymerase sigma factor AlgU 3.64 pl PA14_18670 bfrB bacterioferritin 3.65 pl PA14_23340 ihfB integration host factor subunit beta...”
• Loss of the Two-Component System TctD-TctE in Pseudomonas aeruginosa Affects Biofilm Formation and Aminoglycoside Susceptibility in Response to Citric Acid
  Taylor, mSphere 2019
  • “...PA14_44480 2.57 PA14_02520 2.54 PA14_45620 cheY Two-component response regulator CheY 2.48 PA14_17700 2.48 PA14_10730 2.44 PA14_24770 2.38 PA14_68260 2.36 PA14_45610 cheZ Chemotaxis protein CheZ 2.29 PA14_16260 2.29 PA14_15030 leuA 2-Isopropylmalate synthase 2.28 PA14_61840 2.28 PA14_60520 2.26 PA14_16680 2.19 PA14_30830 2.17 PA14_44860 2.15 PA14_71720 2.14 PA14_19870 ldh...”

RSc0753 PROBABLE TRANSMEMBRANE PROTEIN (NCBI ptt file) from Ralstonia solanacearum GMI1000
Aligns to 15:108 / 108 (87.0%), covers 100.0% of PF05957, 116.9 bits

• rpoN1, but not rpoN2, is required for twitching motility, natural competence, growth on nitrate, and virulence of Ralstonia solanacearum
  Ray, Frontiers in microbiology 2015
  • “...68 Hypothetical 5 pilA TGGCACGGTCCCTGCT 47 Type 4 pilin 6 RSc0731 TGGCAGGCTGTTTGCT 22 Thioesterase 7 RSc0753 TGGCGCGCGATTTGCT 162 Hypothetical 8 RSc0798 * TGGCAGGCAATTTGCA 34 Nucleoside permease operon 9 RSc0940 TGGCACGACTGGTGCA 10 Ribosome small unit GTPaseA 10 RSc0950 TGGCACATTTTTCGCT 19 Hypothetical 11 RSc1121 TGGCAGATATCTTGCT 377 Hypothetical 12...”

AK34_2361 DUF883 domain-containing protein from Burkholderia dolosa AU0158
Aligns to 7:100 / 100 (94.0%), covers 100.0% of PF05957, 113.2 bits

• An Oxygen-Sensing Two-Component System in the Burkholderia cepacia Complex Regulates Biofilm, Intracellular Invasion, and Pathogenicity
  Schaefers, PLoS pathogens 2017
  • “...family transporter -3.6 AK34_1355 Outer membrane protein W precursor 11.4 AK34_3656 Peptidoglycan hydrolase VirB1 11.6 AK34_2361 Probable transmembrane protein 3.1 hfq (AK34_1317) RNA-binding protein 2.8 AK34_4984 FOG: GGDEF domain 2.4 AK34_1354 Dioxygenases related to 2-nitropropane dioxygenase 5.8 AK34_3566 Enoyl-CoA hydratase 13.6 AK34_3563 Acetyl-CoA synthetase 13.9 AK34_3562...”

PP_2105 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 11:104 / 104 (90.4%), covers 97.9% of PF05957, 113.0 bits

• Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions
  Crabbé, BMC microbiology 2012
  • “...transport system PP_1859 Ohr gi|26988589 0.16* OsmC family protein PP_2006 gi|26988731 0.12* Hypothetical protein PP_2006 PP_2105 gi|26988830 0.48 Hypothetical protein PP_2105 PP_2112 AcnA gi|26988836 0.42* Aconitate hydratase PP_2140 gi|26988864 0.47 Hypothetical protein PP_2140 PP_2303 HupB gi|26989027 0.52 Histone family protein DNA-binding protein PP_3089 gi|26989808 0.37* Hypothetical...”

YPO0570 putative membrane protein (NCBI ptt file) from Yersinia pestis CO92
YPTB3485 putative membrane associated protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 8:101 / 101 (93.1%), covers 98.9% of PF05957, 105.4 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...putative membrane protein 0.209 (< 0.001) YPTB3484 YPO0572 putative exported protein 0.533 (0.013) YPTB3485 (yqjD) YPO0570 putative membrane protein 0.674 (0.02) 0.576 (0.002) YPTB3486 YPO0569A 0.606 (0.026) YPTB3510 YPO3565 putative membrane protein 0.745 (0.02) YPTB3573 (panF) YPO3657A sodium/pantothenate symporteR 0.732 (0.028) YPTB3581 YPO3649 putative gamma carboxymuconolactone...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...(hdeD) YPO0590 putative membrane protein 0.209 (< 0.001) YPTB3484 YPO0572 putative exported protein 0.533 (0.013) YPTB3485 (yqjD) YPO0570 putative membrane protein 0.674 (0.02) 0.576 (0.002) YPTB3486 YPO0569A 0.606 (0.026) YPTB3510 YPO3565 putative membrane protein 0.745 (0.02) YPTB3573 (panF) YPO3657A sodium/pantothenate symporteR 0.732 (0.028) YPTB3581 YPO3649 putative...”

PMI3699 hypothetical protein (RefSeq) from Proteus mirabilis HI4320
Aligns to 8:101 / 101 (93.1%), covers 100.0% of PF05957, 103.6 bits

• Genome-wide transposon mutagenesis of Proteus mirabilis: Essential genes, fitness factors for catheter-associated urinary tract infection, and the impact of polymicrobial infection on fitness requirements
  Armbruster, PLoS pathogens 2017
  • “...8.62 PMI2879 ^ plasmid-related protein 8.44 PMI1734 nrdA ribonucleoside-diphosphate reductase class Ia alpha subunit 8.35 PMI3699 hypothetical protein 8.24 PMI3623 dusB * tRNA-U20-dihydrouridine synthase 8.16 PMI0118 hupB DNA-binding protein HU-beta 7.98 PMI2141 agaR ^ transcriptional regulator, DeoR family 7.62 PMI1829 ptsI ^ phosphoenolpyruvateprotein phosphotransferase 7.60 PMI1210...”

BP1057 putative membrane protein (NCBI) from Bordetella pertussis Tohama I
Aligns to 12:105 / 105 (89.5%), covers 98.9% of PF05957, 103.0 bits

• A gel-free proteomic-based method for the characterization of Bordetella pertussis clinical isolates
  Williamson, Journal of microbiological methods 2012
  • “...BP0606 HP 15 U 23 (2) 31 (3) 31 (3) 23 (2) HP Hypothetical protein BP1057 NP_879842 BP1057 HP 12 U 51 (3) 23 (2) 23 (2) 39 (2) HP Hypothetical protein BP1426 NP_880168 BP1426 HP 49 CM 20 (5) 11 (3) 7 (2) 11 (3)...”

YqjD / b3098 ribosome- and membrane-associated DUF883 domain-containing protein YqjD from Escherichia coli K-12 substr. MG1655 (see 8 papers)
YQJD_ECOLI / P64581 Uncharacterized protein YqjD from Escherichia coli (strain K12) (see 2 papers)
c3856 Hypothetical protein yqjD (NCBI ptt file) from Escherichia coli CFT073
b3098 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
ECs3980 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 8:101 / 101 (93.1%), covers 98.9% of PF05957, 102.5 bits

• function: Upon overexpression inhibits growth
  subunit: Binds to 70S and 100S ribosomes, probably via the 30S subunit
  disruption phenotype: Not essential (in strain K12 / BW25113).
• Microbial analyses of ancient ice core sections from greenland and antarctica
  Knowlton, Biology 2013
  • “...d c1826 KC146566 Uncultured bacterium Fi 98 e c3135 KC146552 Uncultured cyanobacterium Cy 98 e c3856 KC146553 Uncultured cyanobacterium Cy 98 e s1137 KC146575 Lactobacillus helveticus Fi 97 e c2005 KC146570 Micrococcus luteus Ac 97 e c67 KC146562 Microcoleus vaginatus Cy 97 e c3509 KC146585 Brevudimonas...”
• Large-scale identification of membrane proteins with properties favorable for crystallization
  Kim, Protein science : a publication of the Protein Society 2015
  • “...predicted to UniProt Accession MW Structure? P0ABA0 P0ADW3 P64581 P0A910 P0ABJ9 P0AFC3 P0ADZ7 P02930 P27434 P0AAI3 P0ADY1 P0ABC3 P0AEH5 P0ABB8 P0ADT8 P0ABC7...”
• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...YqiK YqjD YraM YraP YraR YrbC YrbF Q46868 P77306 P64581 P45464 P64596 P45469 P0ADV7 P63386 YrdA YrdC P0A9W9 P45748 YrfE YtfJ YtfQ P39187 P39325 ZnuA P39172 Zwf...”
• The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction
  Oberto, PloS one 2009
  • “...0.71 1.08 1 1 1.37 1.72 1.22 1 1.55 1.49 0.85 a hypothetical protein yqjD b3098 yqjCDEK 1 0.69 1.05 1.02 1 1.63 2.13 1.37 1 1.49 1.4 0.87 a hypothetical protein yqjE b3099 yqjCDEK 1 0.77 1.16 0.97 1 1.27 1.63 0.79 1 1.15 1.47...”
• Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
  Stepanova, Journal of bacteriology 2007
  • “...proteins Lipoprotein yqjCc b3097 1.7 2.8 Conserved protein yqjDc b3098 1.5 2.3 Conserved protein yhcH nanK nanE nanA c3975 b3222 b3223 b3225 2.6 2.4 2.8 3.6 2.6...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b1449 b1678 b1758 b1957 b1953 b2137 b3097 b3098 b3099 b3102 b3100 Conserved hypothetical protein Putative 4Fe-4S ferredoxin-type protein Conserved protein...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b2960 b3010 b3011 b3021 b3022 b3024 b3029 b3068 b3097 b3098 b3099 b3160 b3190 b3203 b3263 b3292 b3293 b3399 b3400 b3401 b3446 b3448 b3472 b3494 b3515 b3516...”
• Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
  Pomposiello, Journal of bacteriology 2001
  • “...b0719 b0850 b1003 b1198 b2597 b2946 b3160 b3516 b3555 b4367 b4378 b3098 sulA wrbA ybgA ybgD ybjC yccJ ycgC yfiA yggJ yhbW yhiX yiaG yjjS yjjV yqjD 2.9 2.1 2.1...”
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...ygjL 4.06 2 ECs3302 yfeX -2.24 1 ECs3979 yqjC 2.12 2 ECs3322 - 2.10 2 ECs3980 yqjD 2.28 2 ECs3323 - 2.15 2 ECs4033 yraR 2.71 2 ECs3338 purC -5.04 1 ECs4034 yhbO 3.67 2 ECs3339 nlpB -2.13 1 ECs4040 yhbV -3.40 1 ECs3369 guaA -2.99...”

PA2754 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 16:109 / 109 (86.2%), covers 98.9% of PF05957, 102.1 bits

• Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis
  Folsom, BMC microbiology 2010
  • “...hypothetical protein PA2501 133 1858 hypothetical protein PA2622 cspD 19 591 stationary phase replication inhibitor PA2754 140 1797 conserved hypothetical protein PA2780-2781 205 2983 hypothetical proteins PA2807-2808 ptrA 47 3378 Cu hypothetical and two-component repressor PA2862 lipA 176 2785 lactonizing lipase precursor PA2883 121 2207 hypothetical...”
• Effects of antibiotics on quorum sensing in Pseudomonas aeruginosa
  Skindersoe, Antimicrobial agents and chemotherapy 2008
  • “...A C C C D Regulation by AZMc PA2708 PA2747 PA2751 PA2754 PA2777 PA2873 PA2937 PA2939 PA3231 PA3273 PA3274 PA3326 pprBb A D D lecA pqsH Gene PA2588 PA2591 PA2592...”
• Effect of anaerobiosis and nitrate on gene expression in Pseudomonas aeruginosa
  Filiatrault, Infection and immunity 2005
  • “...PA2552 PA2553 PA2554 PA2555 PA2557 PA2572 PA2573 PA2753 PA2754 PA2759 PA2780 PA2790 PA3181 PA3329 PA3330 PA3333 PA3334 PA3337 PA3418 PA3425 PA3458 PA3465 PA3520...”
• Screening for quorum-sensing inhibitors (QSI) by use of a novel genetic system, the QSI selector
  Rasmussen, Journal of bacteriology 2005
  • “...Berkeley PA2701 PA2708 PA2717 PA2722 PA2746 PA2747 PA2751 PA2754 PA2777 PA2819 PA2862 PA2893 PA2895 PA2909 PA2937 PA2939 PA3019 PA3025 Gene 1808 RASMUSSEN ET...”

YfbD / b2266 tail-anchored inner membrane protein ElaB from Escherichia coli K-12 substr. MG1655 (see 7 papers)
ELAB_ECOLI / P0AEH5 Protein ElaB from Escherichia coli (strain K12) (see paper)
elaB / RF|NP_416769 protein elaB from Escherichia coli K12 (see paper)
b2266 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
NP_416769 tail anchored inner membrane protein from Escherichia coli str. K-12 substr. MG1655
W8ZUR8 Stress response protein ElaB from Escherichia coli O25b:H4-ST131
Aligns to 8:101 / 101 (93.1%), covers 97.9% of PF05957, 99.5 bits

• subunit: Upon overexpression binds to ribosomes
• Escherichia coli response to uranyl exposure at low pH and associated protein regulations
  Khemiri, PloS one 2014
  • “...7.0 10 4 3.8 10 5 2.3 10 5 4.17 0.004 - NS Hypothetical protein b2266 11299 5.35 62 2 24 ElaB b2266 2.9 10 6 1.3 10 6 7.4 10 5 4.5 10 5 1.0 10 6 7.4 10 5 4.00 0.05 - NS Molecular...”
• Metabolic shift of Escherichia coli under salt stress in the presence of glycine betaine
  Metris, Applied and environmental microbiology 2014
  • “...b3783 b2041 b3306 b2890 b1274 b4015 b2296 b1276 b1000 b2266 b0757 b0759 b3431 b2053 b0220 b4014 b4014 b2684 b0678 b1482 b4376 b1896 b1897 b0133 b3403 b1062...”
• The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction
  Oberto, PloS one 2009
  • “...1.25 1 1.67 2.18 1.18 1 1.27 1.02 1.18 a fructose bisphosphate aldolase monomer elaB b2266 elaB 1 0.74 0.82 1.04 1 1.35 2.1 1.09 1 1.46 1.34 0.76 a hypothetical protein talA b2464 talA 1 1.33 1.24 1.55 1 1.67 2.31 1.49 1 2.03 1.62...”
• Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
  Stepanova, Journal of bacteriology 2007
  • “...subunit sn-Glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit elaBb b2266 2.5 Conserved protein talA b2464 2.7 Transaldolase A gcvHb b2904 2.7 In...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...5c b1000 b1967 b2717 b1480 b1103 b4248 b3153 b2659 b2266 b1990 b3361 b1051 b4107 b0389 b0419 b0581 b0643 b0707 b0753 b0767 b0865 b1003 b1050 b1188 b1164 b1258...”
• Role of SeqA and Dam in Escherichia coli gene expression: a global/microarray analysis
  Løbner-Olesen, Proceedings of the National Academy of Sciences of the United States of America 2003
  • “...b2497 b2378 b2133 b3510 b1262 b1229 b1482 b1739 b4376 b2266 b2026 b2034 b3581 b2715 b2616 b3670 b4035 b2424 b2669 b0243 b4036 b4034 b2422 b2540 b2752 b2698...”
• Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
  Pomposiello, Journal of bacteriology 2001
  • “...b1112 b1164 b1165 b1200 b1450 b1452 b1643 b1795 b2174 b2266 b2672 b3004 b3024 b3238 b3242 b1661 b3806 b2414 b4382 b4383 b0014 b0812 b0593 b3289 b1611 b3517...”
  • “...b0881 b1112 b1164 b1165 b1200 b1450 b1452 b1643 b1795 b2174 b2266 b2672 b3004 b3024 b3238 b3242 cfa cyaA cysK deoA deoB dnaK dps entC fmu fumC gadA gadB gapA...”
• High-density microarray-mediated gene expression profiling of Escherichia coli
  Wei, Journal of bacteriology 2001
  • “...(TA) cysK (BS) rpsJ (TA) rpsH (TA) rplE (TA) aceA (CM) b2266 rplM (TA) rpsS (TA) nlpD acpP rpmI (TA) rpoS (SS) rpoA hns b4253 rplB (TA) b1452 b0817 b1003 160 99...”
• Resistance to oxidative stress by inner membrane protein ElaB is regulated by OxyR and RpoS.
  Guo, Microbial biotechnology 2019
  • GeneRIF: The authors have determined how ElaB is regulated under oxidative stress: RpoS and OxyR coordinately control the expression of inner membrane protein ElaB.
• Tail-Anchored Inner Membrane Protein ElaB Increases Resistance to Stress While Reducing Persistence in Escherichia coli.
  Guo, Journal of bacteriology 2017
  • GeneRIF: study characterized the function of the C-tail-anchored inner membrane protein ElaB in E. coli ElaB increases resistance to oxidative stress and heat stress, while inactivation of ElaB leads to high persister cell formation.
• Proteomic Study of the Survival and Resuscitation Mechanisms of Filamentous Persisters in an Evolved Escherichia coli Population from Cyclic Ampicillin Treatment
  Sulaiman, mSystems 2020
  • “...h of resuspension in fresh medium UniProt code Gene Protein name P value Fold change P0AEH5 elaB Protein ElaB 0.003 0.18 P08622 dnaJ Chaperone protein DnaJ 0.046 0.28 P77747 ompN Outer membrane porin N 0.014 0.32 P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit 0.028 0.36 P0ABT2 dps...”
• Large-scale identification of membrane proteins with properties favorable for crystallization
  Kim, Protein science : a publication of the Protein Society 2015
  • “...P0ABJ9 P0AFC3 P0ADZ7 P02930 P27434 P0AAI3 P0ADY1 P0ABC3 P0AEH5 P0ABB8 P0ADT8 P0ABC7 P64604 17253 14952 11045 37178 58167 16447 11879 53708 36169 70663 68108...”
• Proteomics-Based Mechanistic Investigation of Escherichia coli Inactivation by Pulsed Electric Field
  Liu, Frontiers in microbiology 2019
  • “...Hydrolase, GN=ycaC 48.6 3 1.5255 0.0104 W1EY44 Zinc transport protein ZntB 13.4 3 1.5160 0.0148 W8ZUR8 Uncharacterized protein, GN=elaB 44.6 4 1.5169 0.0186 H4LI45 Peptidyl-prolyl cis - trans isomerase, GN=slyD 68 6 1.5151 0.0356 W1WTW0 Arginine repressor, GN=argR 42.9 4 1.5101 0.0013 V2T0T4 ABC transporter periplasmic-binding...”
  • “...As shown in Figure 5 , the network map comprised 123 nodes and 208 interactions. W8ZUR8 (uncharacterized protein elaB), predicted by GO annotation to participate in ribosome binding, represented the largest node with ten putative associations. Other differential proteins predicted to interact with seven or more...”

SEN2293 hypothetical protein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
STM2311 putative inner membrane protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 10:103 / 103 (91.3%), covers 98.9% of PF05957, 98.2 bits

• Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates
  Betancor, BMC microbiology 2009
  • “...1 32/00 SEN2051 CT18, TY2, LT2, DT104, SL1344, SPA, SGAL pduS (ferredoxin) SING 2 32/02 SEN2293 CT18, TY2, LT2, SL1344, SBG, SPA, SGAL Hypothetical Protein SING 3 32/00 SEN2494 CT18, LT2, SL1344, DT104, SGAL ratB , lipoprotein SING 4 47/03 SEN2819A CT18, TY2, DT104, SL1344, SPA,...”
• The Rcs phosphorelay system is specific to enteric pathogens/commensals and activates ydeI, a gene important for persistent Salmonella infection of mice
  Erickson, Molecular microbiology 2006
  • “...STM4240 STM3269 STM1285b STM1491 STM3443 STM1515 STM1492 STM3363 STM2311 STM2795 STM1589 STM1284 STM4451 STM0615 STM1952 STM0680 flgD flgB tufA rplP cdh osmY...”

SF2345 orf, conserved hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 301
Aligns to 8:101 / 101 (93.1%), covers 97.9% of PF05957, 97.4 bits

• A Novel Small RNA Regulates Tolerance and Virulence in Shigella flexneri by Responding to Acidic Environmental Changes
  Wang, Frontiers in cellular and infection microbiology 2016
  • “...92 OuterMembrane A55 gi|24114860 Glutathione S-transferase 1,000,000 5.10 22,762 220 Cytoplasmic A56 gi|24113642 Hypothetical protein SF2345 1.83302 5.29 11,280 240 Unknown A58 gi|24114909 Deoxyuridine 5-triphosphate nucleotidohydrolase (dUTPase) 1.97105 5.05 16,433 381 Cytoplasmic A59 gi|24115554 30S ribosomal protein S6 2.41987 5.26 15,177 81 Cytoplasmic A60 gi|24112560 Cell...”

plu3994 No description from Photorhabdus luminescens subsp. laumondii TTO1
Aligns to 8:101 / 101 (93.1%), covers 98.9% of PF05957, 96.7 bits

• Genetic and proteomic characterization of rpoB mutations and their effect on nematicidal activity in Photorhabdus luminescens LN2
  Qiu, PloS one 2012
  • “...34189.6 1 5.12 6.14 3.85 6.77 Nucleosides and nucleotides biosynthesis and metabolism 1 Hypothetical protein, plu3994 P. luminescens TT01 Similar to putative membrane protein YqjD (carboxyl transferase) of E. coli 7.93 11042 1 4.03 0.57 2.91 1.2 3 IS630 family transposase, plu0720 P. luminescens TT01 ISPlu3Y...”
  • “...spectrin beta-heavy chain; beta-H spectrin; 5.93 471351.1 1 2.20 1.8 1.33 1.16 43 hypothetical protein, plu3994 P. luminescens TT01 Similar to putative membrane protein YqjD of E. coli 7.93 11042 1 0.21 0.05 0.1 0.08 5 Periplasmic chaperone, plu0681 P. luminescens TT01 hlpA Histone-like protein HLP-1...”

PPUBIRD1_0113 DUF883 domain-containing protein from Pseudomonas putida BIRD-1
Aligns to 12:106 / 107 (88.8%), covers 98.9% of PF05957, 89.7 bits

• Understanding butanol tolerance and assimilation in Pseudomonas putida BIRD-1: an integrated omics approach
  Cuenca, Microbial biotechnology 2016
  • “...whole cell proteome. These include ArpB (86fold), KatE (46fold), NdH (26fold) and the hypothetical protein PPUBIRD1_0113 (10fold). It should be noted that NdH is an oxidoreductase that controls proton translocation and KatE is a catalase; both proteins play a key role in oxidative stress defense. Genes...”

PA1323 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 16:109 / 110 (85.5%), covers 96.8% of PF05957, 88.0 bits

• Selection of DNA aptamers specific for live Pseudomonas aeruginosa
  Soundy, PloS one 2017
  • “...aeruginosa strains used in binding studies were clinical isolates PA1024 (catheter, urine), PA1205 (left thigh), PA1323 (cystic fibrosis sputum), PA1079 (tracheal aspirate), and PA1236 (blood) obtained from Environmental Science and Research Culture Collection (Porirua, NZ). All bacterial strains were cultured in standard Luria Broth (LB) medium...”
  • “...efficiences. In general JN27 gave more intense staining than JN08, although neither aptamer recognised strain PA1323 as well as the others. In all cases staining was greater than that for E . coli which was neglible. 10.1371/journal.pone.0185385.g005 Fig 5 Aptamer binding to clinical isolates of P...”
• Comparative systems biology analysis to study the mode of action of the isothiocyanate compound Iberin on Pseudomonas aeruginosa
  Tan, Antimicrobial agents and chemotherapy 2014
  • “...transferase Conserved hypothetical protein PA1249 PA1300 PA1318 PA1323 PA1324 PA1327 PA1408 PA1529 PA1559 PA1560 PA1705 PA1706 PA1708 PA1710 PA1730 PA1871...”
• Identification of genes in the σ²² regulon of Pseudomonas aeruginosa required for cell envelope homeostasis in either the planktonic or the sessile mode of growth
  Wood, mBio 2012
  • “...Operon PA0920 d Aminoacyl-phosphatidylglycerol synthase 3.0/<2 3,264:2,825:5,239 PA1243 Predicted transcriptional regulator, PAS domain 2.0/<2 87:30:307 PA1323 Hypothetical, DUF883 family 19.8/15.9 269:13:1,278 PA1324 Predicted to bind/transport polysaccharides 19.1/14.3 Operon PA2167 Hypothetical, unclassified <2/20.7 72:21:470 PA2176 Hypothetical, unclassified <2/7.0 76:19:296 PA2177 d Predicted sensor response hybrid, PAS domain...”
  • “...a three-gene operon expressing hypothetical proteins. Interestingly, another member of the DUF883 protein family is PA1323, which was also included in this study of 22 stimulon members, although its inactivation did not lead to any apparent alteration in 22 activity. PA2717 is predicted to encode a...”
• Food as a source for quorum sensing inhibitors: iberin from horseradish revealed as a quorum sensing inhibitor of Pseudomonas aeruginosa
  Jakobsen, Applied and environmental microbiology 2012
  • “...of California, Berkeley PA0059 PA0122 PA0200 PA0852 PA1130 PA1323 PA1324 PA1708 PA1711 PA1869 PA1871 PA1901 PA1902 PA1903 PA1904 PA1905 PA1999 PA2000 PA2030...”
• Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo
  Huse, mBio 2010
  • “...PA5139 Hypothetical protein Decrease PA1048 Probable outer membrane protein precursor Increase PA1106 Hypothetical protein Increase PA1323 Hypothetical protein Increase PA1324 Hypothetical protein Increase PA1471 Hypothetical protein Increase PA1562 ( acnA ) Aconitase Increase PA1592 Hypothetical protein Increase PA2485 Hypothetical protein Increase PA2779 Hypothetical protein Increase PA3040...”
  • “...these genes is important for maintaining long-term infections. Finally, of the 24 genes, 3 (PA4876, PA1323, and PA1324) were upregulated in an important P.aeruginosa CF isolate, the Liverpool epidemic strain (LES), compared to laboratory strain PAO1 ( 37 ). LES is a particularly virulent P.aeruginosa CF...”
• Structure and function of Pseudomonas aeruginosa protein PA1324 (21-170)
  Mercier, Protein science : a publication of the Protein Society 2009
  • “...and quorum sensing in P. aeruginosa. PA1324 and PA1323 were identified in two expression profiling studies in association with quorum sensing: transcription of...”
  • “...al. One of these studies indicated that PA1324 and PA1323 expression was not repressed upon treatment of cells with furanone, a repressor of quorum sensing.25 A...”
• Lipotoxin F of Pseudomonas aeruginosa is an AlgU-dependent and alginate-independent outer membrane protein involved in resistance to oxidative stress and adhesion to A549 human lung epithelia
  Damron, Microbiology (Reading, England) 2009
  • “...expression of lipotoxins LptF, LptE, LptD, SlyB, OsmE and PA1323 (Skindersoe et al., 2008). Also, other macrolides have been shown to alter biofilms (Wozniak &...”
• Effects of antibiotics on quorum sensing in Pseudomonas aeruginosa
  Skindersoe, Antimicrobial agents and chemotherapy 2008
  • “...of California, Berkeley PA1168 PA1190 PA1242 PA1249 PA1250 PA1323 PA1324 PA1412 PA1431 PA1432 PA1471 PA1556 PA1625 PA1657 PA1662 PA1664 PA1665 PA1667 PA1669...”
• More

YgaM / b2672 DUF883 domain-containing protein YgaM from Escherichia coli K-12 substr. MG1655 (see 8 papers)
YGAM_ECOLI / P0ADQ7 Uncharacterized protein YgaM from Escherichia coli (strain K12) (see paper)
ECs3533 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Aligns to 15:107 / 109 (85.3%), covers 98.9% of PF05957, 87.7 bits

• subunit: Upon overexpression binds to ribosomes
• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...gabD 2.53 2 ECs2900 fbaB 2.45 2 ECs3523 gabT 3.14 2 ECs2920 metG -2.59 1 ECs3533 ygaM 3.32 2 ECs3022 yohC 6.12 2 ECs3554 alaS -2.20 1 ECs3029 O157 4.04 2 ECs3605 cysN -3.19 1 ECs3030 O157 3.38 2 ECs3617 cysH -2.76 1 ECs3053 yeiJ -2.67...”

b2672 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 19:111 / 113 (82.3%), covers 98.9% of PF05957, 87.6 bits

• Reconfiguring the quorum-sensing regulator SdiA of Escherichia coli to control biofilm formation via indole and N-acylhomoserine lactones
  Lee, Applied and environmental microbiology 2009
  • “...b2014 b2080 b2112 b2135 b2165 b2660 b2654 b2655 b2658 b2672 b2809 b2856 b2857 b3099 b3170 b3184 b3260 b3512 b4068 b4126 b4127 Change in expression (fold) SdiA...”
• The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction
  Oberto, PloS one 2009
  • “...1.15 1.37 1 1.72 2.45 1.18 1 1.47 1.5 0.49 a, b hypothetical protein ygaM b2672 ygaM 1 0.48 1.04 1.02 1 2.21 2.24 1.26 1 1.37 1.25 0.49 a hypothetical protein yqjC b3097 yqjCDEK 1 0.71 1.08 1 1 1.37 1.72 1.22 1 1.55 1.49...”
• YcfR (BhsA) influences Escherichia coli biofilm formation through stress response and surface hydrophobicity
  Zhang, Journal of bacteriology 2007
  • “...ygaM ymgE b0806 b0456 b1050 b4045 b4107 b2672 b1195 Hypothetical protein Hypothetical protein Hypothetical protein Highly abundant nonessential protein...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b1784 b1847 b1999 b2080 b2086 b2602 b2660 b2672 b2665 Putative acyl-CoA dehydrogenase (flavoprotein), adaptive response (transcription activated by Ada)...”
• Microarray analysis of transposition targets in Escherichia coli: the impact of transcription
  Manna, Proceedings of the National Academy of Sciences of the United States of America 2004
  • “...b3410 b3399 b4322 b2920 b0863 b4161 b3409 b0208 b4323 b4180 b2672 b2592 b4208 b0365 Gene yidP ybjP intC artP ytfE yafB yrfD ytfF thyA yfiH dgkA yhgG yrfG uxuA...”
• Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate
  Pomposiello, Journal of bacteriology 2001
  • “...b1164 b1165 b1200 b1450 b1452 b1643 b1795 b2174 b2266 b2672 b3004 b3024 b3238 b3242 b1661 b3806 b2414 b4382 b4383 b0014 b0812 b0593 b3289 b1611 b3517 b1493...”
  • “...b1112 b1164 b1165 b1200 b1450 b1452 b1643 b1795 b2174 b2266 b2672 b3004 b3024 b3238 b3242 cfa cyaA cysK deoA deoB dnaK dps entC fmu fumC gadA gadB gapA gatA...”

PM0612 unknown (NCBI ptt file) from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 10:103 / 103 (91.3%), covers 100.0% of PF05957, 87.5 bits

• Screening of 71 P. multocida proteins for protective efficacy in a fowl cholera infection model and characterization of the protective antigen PlpE
  Hatfaludi, PloS one 2012
  • “...reacting protein pDEST-41BA I + + + PM0586 29.9 Plp4- lipoprotein pDEST-17 I + + PM0612 11.4 Pm0612 - Hypothetical outer membrane protein pDEST-41BA I + PM0618 99.4 Pm0618 - aminopeptidase N pDEST-41BA I + PM0659 214.3 Pm0659 - Large extracellular alpha-helical protein, lipoprotein pDEST-17 S...”
• Identification of novel immunogens in Pasteurella multocida
  Al-Hasani, Microbial cell factories 2007
  • “...proteomic analysis of the P. multocida outer membrane [ 12 ] which identified three proteins (PM0612, PM1357 and PM1746) not predicted by bioinformatics. Figure 1 Venn diagram showing the different bioinformatics prediction of the outer membrane and secreted proteins from the P. multocida Pm70 genome using...”

EY04_RS28670 DUF883 domain-containing protein from Pseudomonas chlororaphis
Aligns to 12:106 / 108 (88.0%), covers 98.9% of PF05957, 86.1 bits

• Investigation of the quorum-sensing regulon of the biocontrol bacterium Pseudomonas chlororaphis strain PA23
  Shah, PloS one 2020
  • “...30S ribosomal protein S14 COG0199 J EY04_RS28075 - -2.00 199 agccCCGGCCTGCTCGGCATCGaggc Hypothetical protein cl01888 - EY04_RS28670 -3.29 - 446 gactGGTGCCTGAGCGGCCTGGaaca Zinc ABC transporter permease COG1108 P EY04_RS29155 6.22 6.52 310 Metal ABC transporter substrate-binding protein COG0803 P EY04_RS29150 7.57 7.82 Phosphoribosyl-AMP cyclohydrolase COG0139 E EY04_RS29145 5.91...”

Bamb_5535 protein of unknown function DUF883, ElaB (NCBI) from Burkholderia cepacia AMMD
Aligns to 38:129 / 129 (71.3%), covers 98.9% of PF05957, 82.1 bits

• Identification of quorum sensing-controlled genes in Burkholderia ambifaria
  Chapalain, MicrobiologyOpen 2013
  • “...(prnA) [pyrrolnitrin] 273 432 (4) 2 Bamb_5109 9 + 113 3 I Hypothetical protein 2 Bamb_5535 9 108 1/2 29 M ElaB (protein of unknown function DUF883) 3 Bamb_5622 + 70 22 I PRC-barrel domain-containing protein 3 Bamb_5911 + 229 2/2 0 I LuxR family transcriptional...”
  • “...putative cep box upstream from the transcriptional units of Bamb_2172, Bamb_2297, Bamb_4578, Bamb_4726, Bamb_5109, and Bamb_5535 ( Table 1 and Fig. S1 ). The predictive cep -box sequence, derived from Chambers et al. ( 2006 ) and Wei et al. ( 2011 ), as well as...”

mll3692 hypothetical protein (NCBI) from Mesorhizobium loti MAFF303099
Aligns to 16:108 / 108 (86.1%), covers 97.9% of PF05957, 73.4 bits

• Global transcriptional response to heat shock of the legume symbiont Mesorhizobium loti MAFF303099 comprises extensive gene downregulation
  Alexandre, DNA research : an international journal for rapid publication of reports on genes and genomes 2014
  • “...protein 4.27 mlr3707 Chr Hypothetical protein 4.25 mlr0407 Chr K RNA polymerase sigma factor 4.16 mll3692 Chr Hypothetical protein 4.14 msr8675 Chr S Hypothetical protein 4.11 mlr3233 Chr N Host attachment protein 4.07 msr4317 Chr Hypothetical protein 4.04 mll2066 Chr D Mobile mystery protein b 4.02...”

BQ11720 hypotethical (NCBI) from Bartonella quintana str. Toulouse
Aligns to 16:108 / 108 (86.1%), covers 97.9% of PF05957, 53.4 bits

• Bartonella quintana deploys host and vector temperature-specific transcriptomes
  Abromaitis, PloS one 2013
  • “...3.70 2 5.71 BQ10540 virB secretion system component virB3 0.87 1.56 0 3.68 2 5.38 BQ11720 hypothetical protein 0.63 1.72 0 2.76 2 5.10 BQ11730 hypothetical protein 0.62 1.59 0 2.46 7 4.62 BQ09200 hypothetical protein 0.87 1.33 0 3.07 1 4.59 BQ10980 sensory transduction regulatory...”
  • “...<1.00E-300 56684460 BQ11930 Sel1 repeat-containing protein 8.00E-53 ZP_04681125.1 Sel1 domain protein repeat-containing protein 6.70E-63 163800487 BQ11720 - - - PF05957.8 Bacterial protein of unknown function (DUF883) 1.40E-18 DUF883 One previously unannotated gene of particular interest was gene BQ00450, which was up-regulated at 37C ( Table 1...”

BAB1_1675 DNA gyrase, subunit B (NCBI) from Brucella melitensis biovar Abortus 2308
BMEI0368 Hypothetical Protein (NCBI ptt file) from Brucella melitensis 16M
Aligns to 25:117 / 117 (79.5%), covers 98.9% of PF05957, 51.3 bits

• The Intracellular Life Cycle of Brucella spp
  Celli, Microbiology spectrum 2019
  • “...intracellular replication ( 30 , 38 ) BspC BAB1_0847 unknown unknown ( 30 ) BspE BAB1_1675 unknown unknown ( 30 ) BspF BAB1_1948 unknown intracellular replication ( 30 ) BtpA/TcpB BAB1_0279 MAL Inhibition of TLR signaling; UPR induction ( 52 ) BtpB BAB1_0756 unknown unknown (...”
• Brucella abortus choloylglycine hydrolase affects cell envelope composition and host cell internalization
  Marchesini, PloS one 2011
  • “...20.9 3.4 BAB1_0477 C 55 DNA gyrase subunit B gi|17986651 5.11 5.11 11.2 12.7 3.1 BAB1_1675 U 62 SSU ribosomal protein S1P 1 gi|17988198 5.13 5.19 78.1 63.6 5.0 BAB1_0025 C 63 SSU ribosomal protein S1P 2 gi|17988198 5.16 5.19 78.1 63.6 3.2 BAB1_0025 C 65...”
• Antigen-specific acquired immunity in human brucellosis: implications for diagnosis, prognosis, and vaccine development
  Cannella, Frontiers in cellular and infection microbiology 2012
  • “...69,388 BMEI0810 Putative membrane protein 29,529 BMEI0339 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 35,013 BMEI0368 Putative uncharacterized protein 12,741 BMEII0704 Bacterioferritin 18,659 BMEI0830 Outer membrane protein 85,919 BMEII1015 Sensor protein (kinase transferase) 48,811 BMEI0503 Acyl-CoA hydrolase 14,555 Table 2 Cross-reactive antigens for culture+ or culture-/Rose...”

BS1330_I1655 DUF883 family protein from Brucella suis 1330
Aligns to 25:117 / 117 (79.5%), covers 98.9% of PF05957, 50.5 bits

• Comparative genomic analysis between newly sequenced Brucella suis Vaccine Strain S2 and the Virulent Brucella suis Strain 1330
  Di, BMC genomics 2016
  • “...1 b HR pnc A (found) 20 BS1330_I1642 1 b AV glc B (surface) 21 BS1330_I1655 1 b VA hypothetical protein (found) 22 BS1330_I1684 1 b LR glm M (no direct interaction with substrate) 23 BS1330_I1742 1 b TA pyk (no direct interaction with substrate) 24...”

LB_340a hypothetical protein (RefSeq) from Leptospira interrogans serovar lai str. 56601
LIC20301 hypothetical protein (NCBI) from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Aligns to 1:92 / 92 (100.0%), covers 88.3% of PF05957, 50.1 bits

• Comparative proteogenomic analysis of the Leptospira interrogans virulence-attenuated strain IPAV against the pathogenic strain 56601
  Zhong, Cell research 2011
  • “...addition from 332 934 to 333 358 (LB_340 and LB_340a) with respect to the revised CII coordinates, and a deletion of an 831bp direct repeat flanking the...”
• Identification of seroreactive proteins of Leptospira interrogans serovar copenhageni using a high-density protein microarray approach
  Lessa-Aquino, PLoS neglected tropical diseases 2013
  • “...1.03E-01 88.00% 91.30% 0.917 <1E-14 LIC11570 a 86.00% 56.30% 0.75 3.15E-04 96.00% 78.80% 0.892 2.21E-14 LIC20301 a 86.00% 51.30% 0.698 2.77E-03 92.00% 75.00% 0.861 8.83E-12 LIC10524 a 78.00% 76.30% 0.781 1.59E-05 78.00% 81.30% 0.846 1.40E-08 LIC11437 b 82.00% 45.00% 0.633 6.36E-02 74.00% 72.50% 0.767 3.77E-05 LIC10483...”
  • “...be differentially reactive antigens identified in this work were LIC11222, LIC11955, LIC10486, LIC11271, LIC10483 and LIC20301. Although no previous functions have been assigned to these proteins, here we show that they are part of the L. interrogans immunoproteome and can elicit a host immune response as...”

RL3701 putative transmembrane protein (NCBI) from Rhizobium leguminosarum bv. viciae 3841
Aligns to 22:114 / 114 (81.6%), covers 96.8% of PF05957, 46.2 bits

• Mutation of praR in Rhizobium leguminosarum enhances root biofilms, improving nodulation competitiveness by increased expression of attachment proteins
  Frederix, Molecular microbiology 2014
  • “...RL0610 +2.3 0.013482 Hypothetical exported protein pRL120342 +2.3 5.75E-05 hspD Putative small heat shock protein RL3701 +2.3 0.00145 Putative transmembrane protein RL1165 +2.2 0.02779 Conserved hypothetical protein RL1513 +2.2 0.000623 Putative FNR/CRP family transcriptional regulator RL1034 +2.2 0.04639 Conserved hypothetical protein RL3186 +2.2 0.005128 Putative transmembrane...”

SMc01509 HYPOTHETICAL TRANSMEMBRANE PROTEIN (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 22:120 / 120 (82.5%), covers 97.9% of PF05957, 44.7 bits

• Most Sinorhizobium meliloti Extracytoplasmic Function Sigma Factors Control Accessory Functions
  Lang, mSphere 2018
  • “...2.0, RpoE6 GGGGC GGAAC AAATGGACGGTCGCGC CGTTT GAAACTC G SMb21441 CBS-domain protein 3.8, RpoE2; 1.4, RpoE6 SMc01509 Hypothetical protein 4.5, RpoE2; 2.9, RpoE6 TTAC CGAAAC AAATTCCTCCCTCAT GCGTT GATCTAC A A SMc01508 Hypothetical protein 2.6, RpoE2; 1.4, RpoE6 SMc01609 ribH2 6,7-Dimethyl-8-ribityllumazine synthase 0.6, RpoE6 AATTGTT CAGGGGCGTGAAATCCTTG GAAAAT TCTGTC...”

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