Family Search for PF05987 (DUF898)

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PF05987 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO0399 putative membrane protein from Yersinia pestis CO92
Aligns to 11:391 / 398 (95.7%), covers 99.4% of PF05987, 347.1 bits

• Genomic characterization of the Yersinia genus
  Chen, Genome biology 2010
  • “...Y. fredricksenii ; YPO0599, a heme utilization protein also found in Y. intermedia ; and YPO0399, an enhancin metalloprotease that had an ortholog in Y. kristensenii (ykris0001_41250). Enhancin was originally identified as a factor promoting baculovirus infection of gypsy moth midgut by degradation of mucin [...”

BVG90_02925 DUF898 family protein from Serratia marcescens
Aligns to 11:389 / 396 (95.7%), covers 99.4% of PF05987, 336.5 bits

• Loss of Serine-Type D-Ala-D-Ala Carboxypeptidase DacA Enhances Prodigiosin Production in Serratia marcescens
  Pan, Frontiers in bioengineering and biotechnology 2019
  • “..., transcriptional regulator encoding genes BVG90_02010 and BVG90_03255 , hypothetical protein encoding genes BVG90_17590 and BVG90_02925 , ubiquinone biosynthesis regulatory protein kinase UbiB encoding gene BVG90_22540 , acetolactate synthase isozyme one small subunit encoding gene BVG90_00235 , alkaline phosphatase encoding gene BVG90_04215 , peptide synthetase encoding...”

ABZJ_01259 YjgN family protein from Acinetobacter baumannii MDR-ZJ06
Aligns to 29:355 / 362 (90.3%), covers 99.7% of PF05987, 293.5 bits

• Colistin Resistance in Acinetobacter baumannii MDR-ZJ06 Revealed by a Multiomics Approach
  Hua, Frontiers in cellular and infection microbiology 2017
  • “...1.72533 5.192791 2.02E-11 4.03E-10 ABZJ_01002 putative ABC oligo/dipeptide transport, ATP-binding protein 1.73182 6.449009 4.32E-14 1.19E-12 ABZJ_01259 hypothetical protein 1.75565 7.198513 1.30E-12 2.98E-11 ABZJ_00114 short chain dehydrogenase family protein 1.76754 7.176594 1.03E-13 2.52E-12 ABZJ_01177 hypothetical protein 1.8053 8.135954 6.06E-15 1.81E-13 ABZJ_03792 hypothetical protein 1.82418 6.284478 3.56E-06 2.88E-05...”

VV1_1472 Predicted membrane protein from Vibrio vulnificus CMCP6
Aligns to 7:382 / 390 (96.4%), covers 99.1% of PF05987, 286.6 bits

• A consensus sequence for binding of SmcR, a Vibrio vulnificus LuxR homologue, and genome-wide identification of the SmcR regulon
  Lee, The Journal of biological chemistry 2008
  • “...VV1_0522, VV1_0644, VV1_1215 VV1_1216, VV1_1401, VV1_1472 VV1_1473, VV1_1720, VV1_2362, VV1_2380, VV1_2430, VV1_2726, VV1_2957 VV1_2958, VV2_0067, VV2_0133,...”
  • “...VV1_0464 VV1_0522 VV1_0644 VV1_1215 VV1_1216 VV1_1401 VV1_1472 VV1_1473 VV1_1720 VV1_2362 VV1_2380 VV1_2430 VV1_2726 VV1_2957 VV1_2958 VV2_0067 VV2_0133...”

S4493 hypothetical protein from Shigella flexneri 2a str. 2457T
Aligns to 12:385 / 398 (94.0%), covers 93.8% of PF05987, 165.0 bits

• Data relating to sequencing statistics and the reads and genomic coverage aligning to Taenia solium in the cerebrospinal fluid
  Fei, Data in brief 2020
  • “...Brevundimonas naejangsanensis 0.23745% 4 Cellvibrio sp. pealriver 0.23255% 36 Luteimonas huabeiensis 0.21588% 4 Paracoccus sp. S4493 0.19800% 24 Paracoccus sp. 228 0.17676% 18 Thermomonas hydrothermalis 0.13133% 2 Caldimonas manganoxidans 0.11231% 6 Deinococcus geothermalis 0.06766% 14 Pseudomonas pseudoalcaligenes 0.05742% 8 Tetrasphaera elongata 0.05497% 12 Microbacterium aurum 0.05443%...”

YjgN / b4257 inner membrane protein YjgN from Escherichia coli K-12 substr. MG1655 (see paper)
P39338 Inner membrane protein YjgN from Escherichia coli (strain K12)
b4257 conserved inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 12:385 / 398 (94.0%), covers 93.8% of PF05987, 155.2 bits

• Genetic snapshots of the Rhizobium species NGR234 genome
  Viprey, Genome biology 2000
  • “...938a 12b10 overlaps clone 21a05 886 24f10 P76235 887 28f08 P76235 Synechocystis sp. 888 28a06 P39338 939 04a01 BAA17151 889 30e08 P08367 940 06c03 BAA17443 890 27c11 P77165 941 04h11 BAA18318 891 02b12 P75844 942 09g07 BAA18319 892 24h06 P77334 943 13c07 BAA18330 893 22h02 P46854...”
• YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport
  Herzberg, Journal of bacteriology 2006
  • “...4.9 4.6 4.6 4.6 4.6 4.3 b1228 ytfA yoaG yjgN b1228 b4205 b1796 b4257 4.3 4 4 4 yjcF yhaC ygfF yfdU yfaE b4066 b3121 b2902 b2373 b2236 4 4 4 4 4 yfaA yadS b0370...”

OG1RF_10877 DUF898 family protein from Enterococcus faecalis OG1RF
2 alignments in 2:100 / 101 (98.0%), covering up to 17.6% of PF05987, 58.4 bits

• Exploiting biofilm phenotypes for functional characterization of hypothetical genes in Enterococcus faecalis
  Willett, NPJ biofilms and microbiomes 2019
  • “...) as a phosphatase We found Tn mutations in eight hypothetical genes (OG1RF_10435, OG1RF_10506, OG1RF_10733, OG1RF_10877, OG1RF_11263, OG1RF_11769, OG1RF_12322, and OG1RF_12502) that lead to a defect in early biofilm production and 1 gene (OG1RF_10435) required for both early and late biofilms. We show that OG1RF_10435 is...”
  • “...DUF1506 Poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase (88.6, 66) OG1RF_10733 YggT family protein 69 YGGT Ubiquitin-like protein (13.5, 23) OG1RF_10877 DUF898 family protein 101 DUF898, DUF4234 Conserved domain protein (19.2, 23) OG1RF_11263 hypothetical protein 344 HTH_40, GerE, DUF1818 Winged helix DNA-binding domain (99.6, 27) OG1RF_11769 DNRLRE domain-containing protein 1259 Big_4,...”

EF1098 conserved hypothetical protein from Enterococcus faecalis V583
Aligns to 51:100 / 101 (49.5%), covers 13.7% of PF05987, 52.9 bits

• Expression of the collagen adhesin ace by Enterococcus faecalis strain OG1RF is not repressed by Ers but requires the Ers box
  Cohen, FEMS microbiology letters 2013
  • “...435 and P 176 , respectively. P 435 includes 101 bp of the upstream gene EF1098, the 334 bp intergenic region, and 27 bp of the ace gene. P 176 consists of 176 bp from the ace start codon up to the predicted Ers box previously...”
• Genome-wide identification of small RNAs in the opportunistic pathogen Enterococcus faecalis V583
  Shioya, PloS one 2011
  • “...EF1368_ EF0408_ EF0605_ EF1097_ EF0869_ EF0136_ EFB0062_ EF2205_ strains EF3315 EF0822 EFA0081 EF1369 EF0409 EF0606 EF1098 EF0871 EF0137 EFB0063 EF2206 OGR1RF 90 100 90 90 90 90 100 ARO1/DG 90 100 90 90 100 90 8090 P 100 ATCC 29200 100 100 8090 G 90 90...”

lmo2466 lmo2466 from Listeria monocytogenes EGD-e
Aligns to 62:111 / 111 (45.0%), covers 11.3% of PF05987, 38.3 bits

• Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China
  Wang, BMC genomics 2019
  • “...tag: A6K41_03215, the tRNA-Ser after lmo0670 ), tRNA-CCG-Arg (ICDC-LM188 locus tag: A6K41_12845, the tRNA-Arg after lmo2466 ) and tRNA-GGT-Thr (ICDC-LM188 locus tag: A6K41_13515, the tRNA-Thr after lmo2589 ). P10, named LMST87_004, was assembled into a complete prophage sequence in strain LM1296. It was 43.6kb in size...”

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