Family Search for PF06006 (DUF905)
PF06006 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PSLT067 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 10:78 / 80 (86.2%), covers 100.0% of PF06006, 147.0 bits
Y1091 hypothetical protein from Yersinia pestis KIM
Aligns to 6:74 / 76 (90.8%), covers 98.6% of PF06006, 146.8 bits
- Clathrin light chain A drives selective myosin VI recruitment to clathrin-coated pits under membrane tension
Biancospino, Nature communications 2019 - “...sidechain of which also forms a hydrogen bond to the backbone amide of myosin VI Y1091 (Fig. 4c ). Lastly, L1118 of the RRL motif contributes to binding though interactions with CLCa L55 (Fig. 4b ). Notably, the CLCa amino acids critical for binding to myosin...”
- “...In CLCb, D56 is replaced with an alanine, which cannot form a hydrogen bond with Y1091 in myosin VI (Fig. 4c ). Finally, L55, which embeds itself between helices 2 and 4 of myosin VI (Fig. 4a, b ), is replaced with a proline in CLCb....”
YkfF / b0249 CP4-6 prophage; protein YkfF from Escherichia coli K-12 substr. MG1655
b0249 CP4-6 prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
P75677 UPF0401 protein YkfF from Escherichia coli (strain K12)
Aligns to 5:74 / 79 (88.6%), covers 98.6% of PF06006, 139.6 bits
- Genomic changes arising in long-term stab cultures of Escherichia coli
Faure, Journal of bacteriology 2004 - “...yafA, crl, phoE, proB, proA, b0245, yafW, b0247, yafX, b0249, ykfB, yafY, yafZ, ykfA, perR, b0255, tra8_1, b0257, ykfc, yi52_10 ptsN, b3205, ptsO, b3207, yrbM,...”
- Functional Prediction of Biological Profile During Eutrophication in Marine Environment
Sbaoui, Bioinformatics and biology insights 2022 - “...transporter YjeK P39280 Lysine 2,3-aminomutase YjiD P39375 Anti-adapter protein YjiH P39379 Gate family protein YkfF P75677 CP4-6 prophage; protein YmdC P75919 Putative synthase with phospholipase D/nuclease domain YnbE P64448 Lipoprotein YnfD P76172 DUF1161 domain-containing protein YtfJ P39187 Conserved hypothetical protein The predictive analysis has been performed...”
O3K_25887 DUF905 domain-containing protein from Escherichia coli O104:H4 str. 2011C-3493
Aligns to 9:77 / 77 (89.6%), covers 97.1% of PF06006, 125.2 bits
Q9JMR3 UPF0401 protein YubL from Escherichia coli (strain K12)
Aligns to 11:79 / 79 (87.3%), covers 97.1% of PF06006, 113.1 bits
EDL933_RS28965, EDL933_p0084 DUF905 family protein from Escherichia coli O157:H7 str. EDL933
Aligns to 9:77 / 77 (89.6%), covers 97.1% of PF06006, 109.9 bits
- Transcriptomic and proteomic analysis of the virulence inducing effect of ciprofloxacin on enterohemorrhagic Escherichia coli
Kijewski, PloS one 2024 - “...EDL933_p0080 DUF3560 domain-containing protein 5.1 1.1 -1.2 EDL933_RS28960 EDL933_p0083 Single-stranded DNA-binding protein 7.4 --- --- EDL933_RS28965 EDL933_p0084 DUF905 domain-containing protein 5.0 --- --- EDL933_RS28970 EDL933_p0085 Hypothetical protein 3.2 1.1 2.3 EDL933_RS29000 EDL933_p0089 Hypothetical protein --- -1.2 -1.1 EDL933_RS29040 EDL933_p0097 Dienelactone hydrolase-related enzyme --- -1.4 1.1 Plasmid...”
- “...DUF3560 domain-containing protein 5.1 1.1 -1.2 EDL933_RS28960 EDL933_p0083 Single-stranded DNA-binding protein 7.4 --- --- EDL933_RS28965 EDL933_p0084 DUF905 domain-containing protein 5.0 --- --- EDL933_RS28970 EDL933_p0085 Hypothetical protein 3.2 1.1 2.3 EDL933_RS29000 EDL933_p0089 Hypothetical protein --- -1.2 -1.1 EDL933_RS29040 EDL933_p0097 Dienelactone hydrolase-related enzyme --- -1.4 1.1 Plasmid pO157...”
EC042_RS17205 DUF905 family protein from Escherichia coli 042
Aligns to 7:76 / 77 (90.9%), covers 95.7% of PF06006, 92.6 bits
c0279 Hypothetical protein ykfF from Escherichia coli CFT073
D1792_22035 DUF905 family protein from Escherichia coli
Aligns to 7:76 / 77 (90.9%), covers 91.4% of PF06006, 60.9 bits
Or search for genetic data about PF06006 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory