Family Search for PF06006 (DUF905)

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PF06006 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PSLT067 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 10:78 / 80 (86.2%), covers 100.0% of PF06006, 147.0 bits

• Abrogation of the twin arginine transport system in Salmonella enterica serovar Typhimurium leads to colonization defects during infection
  Reynolds, PloS one 2011
  • “...III, psi subunit PSLT024 y hypothetical protein PSLT046 y b0126 can n putative carbonic anhydrase PSLT067 n b0249 ykfF y hypothetical protein, CP4-6 prophage b0286 yagT y putative xanthine dehydrogenase b0324 yahJ y putative deaminase b0705 ybfL y pseudogene Bold. Differs between the two organisms. a...”
• Characterization of Salmonella enterica subspecies I genovars by use of microarrays
  Porwollik, Journal of bacteriology 2004
  • “...Du3. Both of these strains also retained pSLT056 to pSLT067 (including the ssb gene for the single-stranded DNA binding protein), rendering En3 with a more or...”

Y1091 hypothetical protein from Yersinia pestis KIM
Aligns to 6:74 / 76 (90.8%), covers 98.6% of PF06006, 146.8 bits

• Clathrin light chain A drives selective myosin VI recruitment to clathrin-coated pits under membrane tension
  Biancospino, Nature communications 2019
  • “...sidechain of which also forms a hydrogen bond to the backbone amide of myosin VI Y1091 (Fig. 4c ). Lastly, L1118 of the RRL motif contributes to binding though interactions with CLCa L55 (Fig. 4b ). Notably, the CLCa amino acids critical for binding to myosin...”
  • “...In CLCb, D56 is replaced with an alanine, which cannot form a hydrogen bond with Y1091 in myosin VI (Fig. 4c ). Finally, L55, which embeds itself between helices 2 and 4 of myosin VI (Fig. 4a, b ), is replaced with a proline in CLCb....”

YkfF / b0249 CP4-6 prophage; protein YkfF from Escherichia coli K-12 substr. MG1655
b0249 CP4-6 prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
P75677 UPF0401 protein YkfF from Escherichia coli (strain K12)
Aligns to 5:74 / 79 (88.6%), covers 98.6% of PF06006, 139.6 bits

• Genomic changes arising in long-term stab cultures of Escherichia coli
  Faure, Journal of bacteriology 2004
  • “...yafA, crl, phoE, proB, proA, b0245, yafW, b0247, yafX, b0249, ykfB, yafY, yafZ, ykfA, perR, b0255, tra8_1, b0257, ykfc, yi52_10 ptsN, b3205, ptsO, b3207, yrbM,...”
• Functional Prediction of Biological Profile During Eutrophication in Marine Environment
  Sbaoui, Bioinformatics and biology insights 2022
  • “...transporter YjeK P39280 Lysine 2,3-aminomutase YjiD P39375 Anti-adapter protein YjiH P39379 Gate family protein YkfF P75677 CP4-6 prophage; protein YmdC P75919 Putative synthase with phospholipase D/nuclease domain YnbE P64448 Lipoprotein YnfD P76172 DUF1161 domain-containing protein YtfJ P39187 Conserved hypothetical protein The predictive analysis has been performed...”

O3K_25887 DUF905 domain-containing protein from Escherichia coli O104:H4 str. 2011C-3493
Aligns to 9:77 / 77 (89.6%), covers 97.1% of PF06006, 125.2 bits

• High-resolution genetic analysis of the requirements for horizontal transmission of the ESBL plasmid from Escherichia coli O104:H4
  Yamaichi, Nucleic acids research 2015
  • “...0.00 59222 59749 + O3K_25882 Single-stranded DNA-binding protein Ssb 0.96 0.02 0.02 59807 60040 + O3K_25887 Hypothetical protein Hp14 0.95 0.03 0.02 60099 62057 + O3K_25892 Type II plasmid partioning protein ParB-like 1.00 0.00 0.00 62112 62546 + O3K_25897 Plasmid SOS inhibition protein B PsiB 1.00...”

Q9JMR3 UPF0401 protein YubL from Escherichia coli (strain K12)
Aligns to 11:79 / 79 (87.3%), covers 97.1% of PF06006, 113.1 bits

• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...YfiA YfiO P0AD49 P0AC02 YfjA YgaU Q9JMR3 P0ADE6 Hypothetical UPF0070 protein Hypothetical tRNA/rRNA methyltransferase Protein Hypothetical UPF0169 lipoprotein...”

EC042_RS17205 DUF905 family protein from Escherichia coli 042
Aligns to 7:76 / 77 (90.9%), covers 95.7% of PF06006, 92.6 bits

• Overexpression of the third H-NS paralogue H-NS2 compensates fitness loss in hns mutants of the enteroaggregative Escherichia coli strain 042
  Prieto, Scientific reports 2020
  • “...10.1 EC042_RS24055 (antitoxin hypothetical protein) 9.6 EC042_RS22745 (DUF3521 domain-containing protein) 9.6 EC042_RS03185 (hypothetical protein) 9.3 EC042_RS17205 (hypothetical protein) 9.2 EC042_RS17210 (hypothetical protein) 9.1 EC042_RS03005 (envYporin thermoregulatory protein) 9.0 EC042_RS24455 (hypothetical protein) 8.8 EC042_RS17185 (putative ATP/GTP-binding protein) 8.7 EC042_RS17230 (hypothetical protein) 8.6 EC042_RS21255 (putative prophage protein) 8.6...”

c0279 Hypothetical protein ykfF from Escherichia coli CFT073
D1792_22035 DUF905 family protein from Escherichia coli
Aligns to 7:76 / 77 (90.9%), covers 91.4% of PF06006, 60.9 bits

• Bacterial resistance to leucyl-tRNA synthetase inhibitor GSK2251052 develops during treatment of complicated urinary tract infections
  O'Dwyer, Antimicrobial agents and chemotherapy 2015
  • “...and 13 follow-up Follow-up leuS leuS leuS leuS acnB c0279 c1464 c1472 c1473 c1474 c3157 c3157 c3157 c3157 c3157 c3158 c3670 c3671 c3674 c3679 c4492 c4572 c5158...”
• Genomic and Transcriptomic Analysis of Colistin-Susceptible and Colistin-Resistant Isolates Identify Two-Component System EvgS/EvgA Associated with Colistin Resistance in Escherichia coli
  Wan, Infection and drug resistance 2021
  • “...2 Fold Change B vs A C vs B ydeO Helix-turn-helix domain protein 1.89 1.07 D1792_22035 Hypothetical protein 0.91 0.92 D1792_14815 Fimbrial family protein 0.86 0.64 D1792_15930 O-Antigen ligase family protein 0.62 0.59 D1792_15820 Hypothetical protein 0.52 0.54 D1792_03220 Hypothetical protein 0.56 1.08 D1792_11820 Fimbrial regulatory...”

Or search for genetic data about PF06006 in the Fitness Browser