Family Search for PF06067 (DUF932)

PF06067 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BCAL2507 hypothetical protein from Burkholderia cenocepacia J2315
Aligns to 76:302 / 322 (70.5%), covers 100.0% of PF06067, 252.9 bits

• Burkholderia cenocepacia differential gene expression during host-pathogen interactions and adaptation to the host environment
  O'Grady, Frontiers in cellular and infection microbiology 2011
  • “...BCAL2488 Lysr family regulatory protein 2.07 BCAL2500 Hypothetical protein 1.67 BCAL2505 Putative membrane protein 1.55 BCAL2507 Conserved hypothetical protein 1.93 c BCAL2516 Hypothetical protein 1.70 BCAL2529 Putative transcriptional regulator 1.53 BCAL2541 Putative hydrolase 1.53 BCAL2552 Putative membrane protein 1.53 BCAL2553 Putative membrane protein 1.85 BCAL2558 Putative...”

JNO62_02440 DUF932 domain-containing protein from Ralstonia pseudosolanacearum
Aligns to 75:301 / 321 (70.7%), covers 100.0% of PF06067, 251.0 bits

• Complete Genome Sequence Analysis of Ralstonia solanacearum Strain PeaFJ1 Provides Insights Into Its Strong Virulence in Peanut Plants
  Tan, Frontiers in microbiology 2022
  • “...Among the PeaFJ1 strain-specific genes, three genes were functionally annotated to be LysR-type transcriptional regulators (JNO62_02440, JNO62_02445, and JNO62_20640) ( Supplementary Table 6 ). Relative to HA4-1, the strong virulence of PeaFJ1 may be due to the presence of these three genes. Adhesion- and Invasion-Related Genes...”

WP_115971329 DUF932 domain-containing protein from Chryseobacterium pennae
Aligns to 92:327 / 357 (66.1%), covers 99.6% of PF06067, 224.0 bits

• Chryseobacterium pennae sp. nov., isolated from poultry feather waste
  Nde, International journal of systematic and evolutionary microbiology 2021
  • “...These included Tra genes associated with a two separate conjugative transposons, several phage genes (e.g. WP_115971329, WP_115971998) and many genes annotated as mobile element proteins (e.g. WP_115971419). Given that strain 1_F178 T was isolated from feather waste, proteases would be expected to play an important role...”

C2U47_04775 DUF932 domain-containing protein from Aeromonas sp. ASNIH7
Aligns to 37:265 / 276 (83.0%), covers 100.0% of PF06067, 199.3 bits

• Providing octane degradation capability to Pseudomonas putida KT2440 through the horizontal acquisition of oct genes located on an integrative and conjugative element
  Duque, Environmental microbiology reports 2022
  • “...93 Hypothetical protein Pseudomonas putida E6B08_23580 100 95.34 6.00E121 6 84 Hypothetical protein Aeromonas sp. C2U47_04775 100 98.81 4.00E122 7 277 UPF0380 proteins YafZ and homologues Burkholderia cenocepacia A3203_15330 100 96.99 0.0 8 688 Putative plasmid stabilization protein, ParB Aeromonas caviae WP3S18E02_07940 100 92.89 0.0 9...”

A3203_15330 DUF932 domain-containing protein from Burkholderia cenocepacia
Aligns to 37:265 / 276 (83.0%), covers 100.0% of PF06067, 198.2 bits

• Providing octane degradation capability to Pseudomonas putida KT2440 through the horizontal acquisition of oct genes located on an integrative and conjugative element
  Duque, Environmental microbiology reports 2022
  • “...Aeromonas sp. C2U47_04775 100 98.81 4.00E122 7 277 UPF0380 proteins YafZ and homologues Burkholderia cenocepacia A3203_15330 100 96.99 0.0 8 688 Putative plasmid stabilization protein, ParB Aeromonas caviae WP3S18E02_07940 100 92.89 0.0 9 105 y4eB gene homologue Pseudomonas aeruginosa K0E62_28125 100 98.1 2.00E+152 10 111 Transcriptional...”

SA139 DUF932 domain-containing protein from Escherichia coli
Aligns to 36:262 / 273 (83.2%), covers 100.0% of PF06067, 188.5 bits

• Modeling the Growth and Death of Staphylococcus aureus against Melaleuca armillaris Essential Oil at Different pH Conditions
  Buldain, Antibiotics (Basel, Switzerland) 2021
  • “...for all strains, without a change at pH 6.5 for three strains (SA13, SA96, and SA139) and decreasing by half for the other strains at pH 6.5 (SA78A, SA79A, and SA86B). Variations may be due to the existence of bacterial subpopulations with different sensitivities. At pH...”
  • “...the MIC and MBC of the EO, we found that, for strains SA13, SA96, and SA139, these parameters were the same, and this coincidence was maintained even when the pH conditions were modified. For the other strains, the MBC/MIC ratio was between 2 and 4, maintaining...”
• Isolation of Novel Probiotic Lactobacillus and Enterococcus Strains From Human Salivary and Fecal Sources
  Bazireh, Frontiers in microbiology 2020
  • “...and incubation periods. The five probiotic candidates that were assessed included SA 151, SA 171, SA139 and SA 135. Discussion Over the past decades, research in probiotics has gained a surge of interest because of their multiple health benefits and market demands. Many investigations have been...”
• Antistaphylococcal and Antibiotic Resistance Modulatory Activities of Thirteen Cameroonian Edible Plants against Resistant Phenotypes
  Wamba, International journal of microbiology 2018
  • “...SA18, SA23, SA36, SA39, SA56, SA64, SA68, SA88, SA114, SA116, SA124, SA126, SA127, SA135, and SA139) available in our laboratory collection and previously isolated from patients in Ad-Lucem Hospital in Banka-Bafang (West Region of Cameroon) [ 54 ]. Their bacterial features are summarized in Table 2...”
  • “...r , Dox r [ 54 ] SA135 Clinical isolate: Erm r [ 54 ] SA139 Clinical isolate: Erm r [ 54 ] Chl r , Cyp r , Erm r , Flx r , Im/Cs r , Kan r , Met r , Ofxa r...”
• Syzygium jambos Displayed Antibacterial and Antibiotic-Modulating Activities against Resistant Phenotypes
  Wamba, Evidence-based complementary and alternative medicine : eCAM 2018
  • “...SA07, SA18, SA23, SA36, SA39, SA56, SA64, SA68, SA88, SA114, SA116, SA124, SA126, SA127, SA135, SA139) available in our Laboratory collection and previously isolated from patients in Ad-Lucem Hospital in Banka-Bafang (West Region of Cameroon) [ 18 ]. Gram-negative bacteria included MDR isolates (laboratory collection) and...”
  • “...- - <0.5 <0.5 1 SA135 128 512 4 1024 - - <0.5 1 <2 SA139 256 1024 4 - - - <0.5 <0.5 1 MSSA1 128 512 4 1024 - - 2 16 8 MRSA3 64 512 8 1024 - - 2 16 8 MRSA4...”
• Microbial quality of agricultural water in Central Florida
  Topalcengiz, PloS one 2017
  • “...+ + + + 4, 12:i:- SA133 Pond 1 04/30/2013 + + + + Baildon SA139 Pond 1 05/21/2013 + + + - Javiana SB38 Pond 2 05/07/2014 + N/A # N/A # N/A # N/A # SB63 Pond 3 12/30/2013 + + + + 4,...”

YafZ / b0252 CP4-6 prophage; DUF932 domain-containing protein YafZ from Escherichia coli K-12 substr. MG1655 (see paper)
Aligns to 37:262 / 273 (82.8%), covers 100.0% of PF06067, 186.8 bits

YfjQ / b2633 CP4-57 prophage; DUF932 domain-containing protein YfjQ from Escherichia coli K-12 substr. MG1655 (see paper)
b2633 CP4-57 prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
P52132 UPF0380 protein YfjQ from Escherichia coli (strain K12)
Aligns to 37:262 / 273 (82.8%), covers 100.0% of PF06067, 182.5 bits

• Whole genome re-sequencing to identify suppressor mutations of mutant and foreign Escherichia coli FtsZ
  Gardner, PloS one 2017
  • “...439585 G ispA geranyltranstransferase K247N b0421 JW0411 SUP[Mpu/EcCt13] T 2767761 A yfjQ prophage CP4-57 S147R b2633 JW2614 SUP[Mpu/EcCt28] A 433159 C ribD fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino uracil reductase) T161P b0414 JW0404 SUP[Q47K2] G 3308772 A nlpI conserved hypothetical protein P3V b3163 JW3132 SUP[CtYFP1//Q47K] C 1738186...”
• Chromosomal deletion formation system based on Tn5 double transposition: use for making minimal genomes and essential gene analysis
  Goryshin, Genome research 2003
  • “...4117696 14112 2825 12227 92 5853 23322 mcrA; minD bglA; gcvP b2633; b2647 none mdoB; tsr menA; frwC 11 12 13 14 15 11.3 12.17 13.19 14.17 15.17 2793099 14166...”
• Ferric dicitrate transport system (Fec) of Shigella flexneri 2a YSH6000 is encoded on a novel pathogenicity island carrying multiple antibiotic resistance genes
  Luck, Infection and immunity 2001
  • “...88 85 80 83 90 P52131, P76359 P39180 P52132 P52139, P52603 p52140, P76362 P76363 P76364, P52141 AAC31485.1, P76365, O46953 AAC31487.1, P76366 AAC31488.1...”

ECIAI39_1018 hypothetical protein from Escherichia coli IAI39
Aligns to 37:262 / 273 (82.8%), covers 100.0% of PF06067, 181.8 bits

• Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects
  Kang, Nature microbiology 2022
  • “...Lactose/galactose transporter 14 <10 4 Rz Endopeptidase from phage origin (lysis protein) 13 <10 9 ECIAI39_1018 Hypothetical protein 11 <10 4 ECIAI39_4867 Hypothetical protein 10 <10 2 yncK Transposase ORF A 10 <10 8 K. pneumoniae KPHS_51490 Putative transposase 30 <10 39 KPHS_35720 Putative transposase 18...”

EC042_2245 DUF932 domain-containing protein from Escherichia coli 042
Aligns to 36:261 / 272 (83.1%), covers 100.0% of PF06067, 181.6 bits

• Gene duplications in the E. coli genome: common themes among pathotypes
  Bernabeu, BMC genomics 2019
  • “...3.1 3.9 52 EC042_2243 3 3.8 53 EC042_2244 2.2 2.2 54 EC042_2244A 4.9 5.9 55 EC042_2245 5 5.1 56 EC042_2246 4.6 4.8 57 EC042_2247 5 3.9 58 EC042_2247A 5 4.7 59 EC042_2248 5.1 4.5 60 EC042_2249 4.9 2.6 Region 3 64 EC042_3180 3 4.4 65 EC042_3181...”

pBCA076 hypothetical protein from Burkholderia cenocepacia J2315
Aligns to 37:264 / 275 (82.9%), covers 100.0% of PF06067, 179.8 bits

• Burkholderia cenocepacia differential gene expression during host-pathogen interactions and adaptation to the host environment
  O'Grady, Frontiers in cellular and infection microbiology 2011
  • “...Hypothetical protein 6.97 pBCA062 Conserved hypothetical protein 2.52 d pBCA065 Conserved hypothetical protein 1.53 c pBCA076 Conserved hypothetical protein 1.55 c pBCA077 Conserved hypothetical protein 1.66 d pBCA087 NUDIX hydrolase family protein 1.53 pBCA088 Amidohydrolase family protein 1.64 pBCA090 Putative integrase 1.68 pBCA095 Putative ligase 1.59...”

EC042_RS17210 DUF932 domain-containing protein from Escherichia coli 042
Aligns to 36:261 / 272 (83.1%), covers 99.6% of PF06067, 175.8 bits

• Overexpression of the third H-NS paralogue H-NS2 compensates fitness loss in hns mutants of the enteroaggregative Escherichia coli strain 042
  Prieto, Scientific reports 2020
  • “...protein) 9.6 EC042_RS22745 (DUF3521 domain-containing protein) 9.6 EC042_RS03185 (hypothetical protein) 9.3 EC042_RS17205 (hypothetical protein) 9.2 EC042_RS17210 (hypothetical protein) 9.1 EC042_RS03005 (envYporin thermoregulatory protein) 9.0 EC042_RS24455 (hypothetical protein) 8.8 EC042_RS17185 (putative ATP/GTP-binding protein) 8.7 EC042_RS17230 (hypothetical protein) 8.6 EC042_RS21255 (putative prophage protein) 8.6 EC042_RS25650 (putative RadC-like DNA...”

O2ColV142 hypothetical protein from Escherichia coli
Aligns to 53:229 / 240 (73.8%), covers 74.9% of PF06067, 122.9 bits

• The plasmid of Escherichia coli strain S88 (O45:K1:H7) that causes neonatal meningitis is closely related to avian pathogenic E. coli plasmids and is associated with high-level bacteremia in a neonatal rat meningitis model
  Peigne, Infection and immunity 2009
  • “...of conjugal transfer operon) Product O2ColV143 O2ColV142 O2ColV141 O2ColV140 O2ColV139 O2ColV145 O2ColV144 O2ColV72 O2ColV73 O2ColV148 O2ColV152 O2ColV185...”

Or search for genetic data about PF06067 in the Fitness Browser