Family Search for PF06078 (DUF937)

PF06078.11 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DR_0201 DUF937 domain-containing protein from Deinococcus radiodurans R1
DR0201 hypothetical protein (NCBI ptt file) from Deinococcus radiodurans R1
Aligns to 6:131 / 272 (46.3%), covers 93.4% of PF06078, 87.4 bits

• RNA-Seq-Based Comparative Transcriptome Analysis Highlights New Features of the Heat-Stress Response in the Extremophilic Bacterium Deinococcus radiodurans
  Xue, International journal of molecular sciences 2019
  • “...0.00011999 Hypothetical protein DR_A0364 4.3096 5.93 10 5 Oxidoreductase, short-chain dehydrogenase/reductase family [ 13 ] DR_0201 4.321 0.00785386 Hypothetical protein DR_0392 4.3342 0.00434331 Hypothetical protein [ 10 ] DR_0334 4.3572 0.01241591 Lipase, putative DR_B0038 4.3573 0.01463299 Hypothetical protein DR_A0352 4.3662 0.00155047 Methyl-accepting chemotaxis protein DR_2240 4.3942...”
• Characteristics of dr1790 disruptant and its functional analysis in Deinococcus radiodurans
  Cheng, Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 2015
  • “...DR1306 Predicted secreted protein 2.03588 0.007 DRA0234 Hypothetical protein 2.04611 0.004 DR1114 HSP20 2.06477 0.005 DR0201 Hypothetical protein 2.08698 0.033 DRA0143 3-Hydroxyacyl-CoA dehydrogenase 2.08777 0.024 DR2385 Phenylacetic acid degradation protein PaaB 2.16397 0.008 DRA0290 Cell division protein FtsH (ftsH-3) 2.21667 0.007 DR0607 GroEL protein (groEL) 2.28587...”
• A novel OxyR sensor and regulator of hydrogen peroxide stress with one cysteine residue in Deinococcus radiodurans
  Chen, PloS one 2008
  • “...in MOxyR. Locus Annotation MOxyR H2O2 a Increase fold p value Increase fold p value DR0201 Predicted protein 2.92 0.00141 2.56 0.006516 DR0371 Predicted protein 2.57 0.007263 3.19 0.090488 DR0407 Membrane protein 2.65 0.030893 2.05 0.105049 DR0685 Uncharacterized secreted protein 2.15 0.000489 4.17 0.01594 DR0781 CHEY...”

NGR_c03840 hypothetical protein (RefSeq) from Rhizobium sp. NGR234
Aligns to 6:137 / 272 (48.5%), covers 99.3% of PF06078, 85.1 bits

• Coordinated Regulation of the Size and Number of Polyhydroxybutyrate Granules by Core and Accessory Phasins in the Facultative Microsymbiont Sinorhizobium fredii NGR234
  Sun, Applied and environmental microbiology 2019 (secret)

PA3796 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 29:177 / 195 (76.4%), covers 89.8% of PF06078, 76.8 bits

• LTQ-XL mass spectrometry proteome analysis expands the Pseudomonas aeruginosa AmpR regulon to include cyclic di-GMP phosphodiesterases and phosphoproteins, and identifies novel open reading frames
  Kumari, Journal of proteomics 2014
  • “...probable oxidoreductase R.DLLVEVRAISVNPVDTphosK.V PA3659 probable aminotransferase R.CQILFLCSphosPGNPTGALVPLETLK.K PA3700 lysyl-tRNA synthetase R.YphosPFEVSPLARR.N PA3728 hypothetical protein R.HRFSVNTQELDLTphosLMPR.G PA3796 hypothetical protein K.LTphosPDGQAPQGDLDIGSLLAR.F PA3817 probable methyltransferase R.LYGRSAISphosKLEMNILR.G PA4251 50S ribosomal protein L5 K.ITphosGQKPVVTYARK.S PA4256 50S ribosomal protein L16 R.GSphosKVSFGEYALKATSRGR.L PA4414 UDP-N-acetylmuramoylalanine--D-glutamate ligase R.YphosLARRGLPFAVVDTR.E PA4448 histidinol dehydrogenase R.SYHEKQKQGSphosWR.Y PA4496 probable binding...”

MUL_3721 hypothetical protein (NCBI) from Mycobacterium ulcerans Agy99
Aligns to 8:138 / 201 (65.2%), covers 92.7% of PF06078, 66.2 bits

• Identification of the Mycobacterium ulcerans protein MUL_3720 as a promising target for the development of a diagnostic test for Buruli ulcer
  Dreyer, PLoS neglected tropical diseases 2015
  • “...arranged in an operon structure with two adjacent putative cell wall-associated protein coding genes ( MUL_3721 , MUL_3722 ). Immunofluorescence stainings of M. ulcerans bacilli confirmed the cell wall localization of MUL_3720. With its cell wall location, the two-domain structure including a mannose-binding N-terminal cytoplasmic component...”

ABK1_2164 DUF937 domain-containing protein from Acinetobacter baumannii 1656-2
Aligns to 5:171 / 196 (85.2%), covers 86.9% of PF06078, 60.6 bits

• Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
  Schultz, Microbial genomics 2016
  • “...2006 1.9 2 ABK1_3165 BAL_329 (CC10) 1 64 oxa23 Tn 2006 0.7 1 ABK1_125 or ABK1_2164 or ABK1_2755 GC1 2 64 oxa23 Tn 2006 0.40.5 a BAL_212 (ST52) 1 64 oxa23 Tn 2006 1.09 a BAL_103 1 0.5 oxa23 Tn 2006 0.07 b UV 1268 (CC10)...”

MCHK_2058 YidB family protein from Mesorhizobium huakuii 7653R
Aligns to 11:134 / 149 (83.2%), covers 53.3% of PF06078, 51.0 bits

• RNA-Seq and microarrays analyses reveal global differential transcriptomes of Mesorhizobium huakuii 7653R between bacteroids and free-living cells
  Peng, PloS one 2014
  • “...protein 5.9853 MCHK_6013 a mhl6013 mll4959 protein 6.0062 MCHK_0893 a mhr0893 putative uncharacterized protein 1.5161 MCHK_2058 a mhl2058 conserved hypothetical protein 0.4313 MCHK_2321 a mhl2321 putative esterase/lipase/thioesterase 0.8216 MCHK_5691 a mhl5691 putative uncharacterized domain protein 8.5342 MCHK_3151 a mhl3151 ykud domain protein 8.1921 MCHK_1970 a mhr1970...”

BAB1_0460 Ribosomal protein P2 (NCBI) from Brucella melitensis biovar Abortus 2308
Aligns to 9:167 / 183 (86.9%), covers 70.8% of PF06078, 46.6 bits

• Diverse genetic regulon of the virulence-associated transcriptional regulator MucR in Brucella abortus 2308
  Caswell, Infection and immunity 2013
  • “...3.03 7.10 Transcription and translation BAB1_0190 BAB1_0460 BAB1_0594 BAB1_1605 BAB2_0143 BAB2_0806 BAB2_0807 Transcriptional regulator, LuxR family protein...”

APL_0086 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
Aligns to 1:113 / 141 (80.1%), covers 75.2% of PF06078, 45.0 bits

• Transcriptional profiling of Actinobacillus pleuropneumoniae during the acute phase of a natural infection in pigs
  Deslandes, BMC genomics 2010
  • “...indirectly by HlyX under anaerobiosis, 12 ( dnaX, visC, dsbC, mazG, amiB, cpxC, dacA, rpoZ, APL_0086, APL_1597, APL_1802 and APL_2043 ) were down-regulated in vivo , while only 5 ( sohB, mglB, hybB, APL_0096 and APL_0920 ) were up-regulated. Two genes coding for proteins with regulatory...”

S4005 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 2:107 / 132 (80.3%), covers 53.3% of PF06078, 44.3 bits

• Structure of YidB protein from Shigella flexneri shows a new fold with homeodomain motif
  Osipiuk, Proteins 2006
  • “...The crystal structure of an uncharacterized conserved protein S4005, coded by yidB gene of Shigella flexneri (gi:30043267),1 has been determined by single...”
  • “...of YidB protein from Shigella flexneri (S4005 protein, gi:30043267) and its homologs gi|75177733| (Shigella boydii), gi|67662828| (Burkholderia cenocepacia),...”

YidB / b3698 DUF937 domain-containing protein YidB from Escherichia coli K-12 substr. MG1655 (see paper)
b3698 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:107 / 132 (80.3%), covers 67.9% of PF06078, 44.3 bits

• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b3515 b3516 b3522 b3548 b3555 b3574 b3581 b3596 b3655 b3698 b3818 b3827 b3861 b3875 b3923 b3928 b3937 b3995 b4030 b4126 b4127 b4135 b4178 b4189 b4199 b4206...”

Smed_4857 hypothetical protein (RefSeq) from Sinorhizobium medicae WSM419
Aligns to 2:141 / 161 (87.0%), covers 77.4% of PF06078, 43.2 bits

• Computational prediction of type III secreted proteins from gram-negative bacteria
  Yang, BMC bioinformatics 2010
  • “...hypothetical protein -188 ~ -152 9.80E-06 0.51 bll1636 hypothetical protein -657 ~ -621 3.10E-03 0.50 Smed_4857 hypothetical protein -826 ~ -790 0.0068 0.49 Smed_1856 putative signal peptide protein -299 ~ -263 2.80E-03 0.48 Smed_4485 hypothetical protein -637 ~ -601 0.005 0.4 bll0275 hypothetical protein -395 ~...”

SMa1765 Hypothetical protein (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 2:141 / 161 (87.0%), covers 77.4% of PF06078, 42.3 bits

• An extracytoplasmic function sigma factor acts as a general stress response regulator in Sinorhizobium meliloti
  Sauviac, Journal of bacteriology 2007
  • “...Berkeley sma0612 sma0617 sma0621 sma1677 sma1720 sma1765 sma2071 sma2253 smb20094 smb20204 smb20227 smb20228 smb20251 smb20331 smb20454 smb20879 smb20933...”

ECs4633 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Aligns to 2:107 / 132 (80.3%), covers 53.3% of PF06078, 42.1 bits

• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...ilvN 4.84 2 ECs4174 rplX -4.14 1 ECs4612 ilvB 4.41 2 ECs4175 rplN -4.46 1 ECs4633 yidB 3.85 2 ECs4176 rpsQ -4.30 1 ECs4672 glmU -2.20 1 ECs4177 rpmC -4.12 1 ECs4674 atpD -2.97 1 ECs4178 rplP -3.60 1 ECs4675 atpG -3.77 1 ECs4179 rpsC -5.07...”

Or search for genetic data about PF06078 in the Fitness Browser