PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06078 (DUF937)

PF06078.11 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

DR_0201 DUF937 domain-containing protein from Deinococcus radiodurans R1
DR0201 hypothetical protein (NCBI ptt file) from Deinococcus radiodurans R1
Aligns to 6:131 / 272 (46.3%), covers 93.4% of PF06078, 87.4 bits

NGR_c03840 hypothetical protein (RefSeq) from Rhizobium sp. NGR234
Aligns to 6:137 / 272 (48.5%), covers 99.3% of PF06078, 85.1 bits

PA3796 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 29:177 / 195 (76.4%), covers 89.8% of PF06078, 76.8 bits

MUL_3721 hypothetical protein (NCBI) from Mycobacterium ulcerans Agy99
Aligns to 8:138 / 201 (65.2%), covers 92.7% of PF06078, 66.2 bits

ABK1_2164 DUF937 domain-containing protein from Acinetobacter baumannii 1656-2
Aligns to 5:171 / 196 (85.2%), covers 86.9% of PF06078, 60.6 bits

MCHK_2058 YidB family protein from Mesorhizobium huakuii 7653R
Aligns to 11:134 / 149 (83.2%), covers 53.3% of PF06078, 51.0 bits

BAB1_0460 Ribosomal protein P2 (NCBI) from Brucella melitensis biovar Abortus 2308
Aligns to 9:167 / 183 (86.9%), covers 70.8% of PF06078, 46.6 bits

APL_0086 hypothetical protein (NCBI) from Actinobacillus pleuropneumoniae L20
Aligns to 1:113 / 141 (80.1%), covers 75.2% of PF06078, 45.0 bits

S4005 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 2:107 / 132 (80.3%), covers 53.3% of PF06078, 44.3 bits

YidB / b3698 DUF937 domain-containing protein YidB from Escherichia coli K-12 substr. MG1655 (see paper)
b3698 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:107 / 132 (80.3%), covers 67.9% of PF06078, 44.3 bits

Smed_4857 hypothetical protein (RefSeq) from Sinorhizobium medicae WSM419
Aligns to 2:141 / 161 (87.0%), covers 77.4% of PF06078, 43.2 bits

SMa1765 Hypothetical protein (NCBI ptt file) from Sinorhizobium meliloti 1021
Aligns to 2:141 / 161 (87.0%), covers 77.4% of PF06078, 42.3 bits

ECs4633 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Aligns to 2:107 / 132 (80.3%), covers 53.3% of PF06078, 42.1 bits

Or search for genetic data about PF06078 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory