Family Search for PF06097 (DUF945)

PF06097 hits 19 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM1466 putative periplasmic protein from Salmonella typhimurium LT2
Aligns to 1:480 / 502 (95.6%), covers 100.0% of PF06097, 518.2 bits

• Media ion composition controls regulatory and virulence response of Salmonella in spaceflight
  Wilson, PloS one 2008
  • “...flgG flagellar biosynthesis, cell-distal portion of basal-body rod STM1196 0.59 x acpP acyl carrier protein STM1466 0.59 ydgA putative periplasmic protein STM1916 0.55 x cheY chemotaxis regulator, transmits chemoreceptor signals to flagellar motor STM1959 0.44 x fliC flagellar biosynthesis; flagellin, filament structural protein STM1962 0.54 x...”

t1334 conserved hypothetical protein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 1:480 / 502 (95.6%), covers 100.0% of PF06097, 517.1 bits

• Prevalence and Diversity of Staphylococcus aureus and Staphylococcal Enterotoxins in Raw Milk From Northern Portugal
  Oliveira, Frontiers in microbiology 2022
  • “...0.07.6%) distinct isolates, while t002, t108, t117, t127, t189, t208, t267, t843, t899, t1200, t1207, t1334, t2383, t3585, t9216, and t19272, were associated to one (1.6%, 95% CI: 0.04.7%) S. aureus isolate ( Figure 2 ). FIGURE 2 Minimum spanning tree of the spa typing for...”
  • “...and one t2383. S. aureus t1403, t2802, t571, t108, t189. t208, t267, t843, t1200, t1207, t1334, and t19272 were exclusively associated with strains that did not contain any of the virulence/resistance genes evaluated. In total, S. aureus t1403-none (16.1%, 95% CI: 7.025.3%) is the predominant molecular...”

YdgA / b1614 DUF945 domain-containing protein YdgA from Escherichia coli K-12 substr. MG1655 (see 3 papers)
YDGA_ECOLI / P77804 Protein YdgA from Escherichia coli (strain K12) (see paper)
ydgA / RF|NP_416131 protein ydgA from Escherichia coli K12 (see paper)
b1614 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:480 / 502 (95.6%), covers 100.0% of PF06097, 514.9 bits

• subunit: Homodimer.
• Biodistribution of ⁸⁹Zr-DFO-labeled avian pathogenic Escherichia coli outer membrane vesicles by PET imaging in chickens
  Li, Poultry science 2023
  • “...and vesicular transport Cell inner membrane 355 P0CK95 ACFD Function unknown Cell inner membrane 356 P77804 YDGA Function unknown Cell inner membrane 357 P0C0S1 MSCS Cell wall/membrane/envelope biogenesis Cell inner membrane 358 P0AB98 ATP6 Energy production and conversion Cell inner membrane 359 P0ADA3 NLPD Cell wall/membrane/envelope...”
• Comparative Analysis of Outer Membrane Vesicle Isolation Methods With an Escherichia coli tolA Mutant Reveals a Hypervesiculating Phenotype With Outer-Inner Membrane Vesicle Content
  Reimer, Frontiers in microbiology 2021
  • “...Increased in tolA P0AC41 sdhA Succinate dehydrogenase flavoprotein subunit tolA 0.0013 INF Increased in tolA P77804 ydgA Protein YdgA tolA 0.015 INF Increased in tolA OUTER MEMBRANE P77774 bamB Outer membrane protein assembly factor BamB BOTH <0.00010 23 Increased in tolA P0A903 bamC Outer membrane protein...”
• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...YdhR YdiA YdiJ YdiY YdjA YeaD YeaZ P77318 P77804 P76177 P0AC69 P77552 P0ACX3 P0A8A4 P77748 P76206 P0ACY1 P39173 P76256 5.38/59,928.8 5.07/54,689 9.1/31,910.83...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b1003 b1050 b1188 b1164 b1258 b1259 b1341 b1547 b1614 b1783 b1784 b1847 b1999 b2080 b2086 b2602 b2660 b2672 b2665 Putative acyl-CoA dehydrogenase...”

SSON_1546 hypothetical protein from Shigella sonnei Ss046
Aligns to 1:480 / 502 (95.6%), covers 100.0% of PF06097, 514.6 bits

• High yield production process for Shigella outer membrane particles
  Berlanda, PloS one 2012
  • “...protein SF1022 [S. flexneri 2a str. 301] SF1022 gi|24112431 Inner membrane 56 1 hypothetical protein SSON_1546 [S. sonnei Ss046] ydgA gi|74312061 Unknown 57 3 putative receptor [S. sonnei Ss046] SSON_1681 gi|74312191 58 2 hypothetical protein SSON_1556 [S. sonnei Ss046] ydgH gi|74312071 59 2 hypothetical protein SSON_3340...”

YPO2262 putative exported protein from Yersinia pestis CO92
Aligns to 1:471 / 514 (91.6%), covers 100.0% of PF06097, 509.4 bits

• Cell membrane is impaired, accompanied by enhanced type III secretion system expression in Yersinia pestis deficient in RovA regulator
  Yang, PloS one 2010
  • “...exported sulfate-binding protein 3.C.1 Cell envelop YPO0917 2.57 yggE putative exported protein 3.C.1 Cell envelop YPO2262 3.82 ----- putative exported protein 3.C.1 Cell envelop YPO2315 3.34 ----- putative exported protein 3.C.1 Cell envelop YPO2670 4.12 ureG urease accessory protein 3.C.1 Cell envelop YPO4070 3.16 yiaF putative...”

y2104 hypothetical protein from Yersinia pestis KIM
Aligns to 26:496 / 539 (87.4%), covers 100.0% of PF06097, 509.2 bits

• Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes
  Pieper, Proteome science 2009
  • “...system subunits (ClpB, #78, y3673, #172; y3674, #89; y3675, #211) and a putative phospholipid-binding protein (y2104, #207). While we only infer the association of aforementioned proteins with distinct membrane protein complexes, this experiment was in support of the notion that many proteins assigned to the membrane...”
  • “...which has been linked to pathogenicity of Vibrio cholerae [ 58 ], and the protein y2104, a putative phospholipid-binding protein whose ortholog YdgA also formed oligomeric structures in E. coli [ 50 ]. OM-associated proteins and protein complexes of the OM Thirty-one proteins were designated Y....”

PP1230 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 1:485 / 502 (96.6%), covers 99.8% of PF06097, 399.1 bits

• UEG Week 2024 Poster Presentations
  , United European gastroenterology journal 2024
• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

lpg0541 probable membrane protein YdgA-like from Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Aligns to 10:489 / 494 (97.2%), covers 99.8% of PF06097, 385.9 bits

• Identification of a hypervariable region containing new Legionella pneumophila Icm/Dot translocated substrates by using the conserved icmQ regulatory signature
  Zusman, Infection and immunity 2008
  • “...mutant (26); OG3001, a letA mutant (22); ZT-001, an lpg0541 mutant; ZT-003, an lpg1836 mutant; ZT-004, an lpg1962 mutant; and ZT-005, an lpg1983 mutant. The E....”
  • “...To generate a deletion substitution in the L. pneumophila lpg0541 and lpg1983 genes, a 1-kb DNA fragment located on each side of the deletion planned was...”

NMBM0579_0886 YdgA family protein from Neisseria meningitidis M0579
Aligns to 1:500 / 516 (96.9%), covers 99.6% of PF06097, 364.8 bits

• Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein
  Takahashi, PloS one 2020
  • “...strain Estimated Molecular weight Number of matched peptides MASCOT score Sequence coverage gi|325136153 hypothetical protein NMBM0579_0886 NMBM0579_0886 57kDa 102 1843 25% gi|325144519 hypothetical protein NMBM01240013_0931 57kDa 99 1758 24% gi|325140435 hypothetical protein CU385 57kDa 93 1718 24% gi|488174415 hypothetical protein 57kDa 93 1920 22% gi|485353984 DNA-directed...”
  • “...strain Estimated Molecular weight Number of matched peptides MASCOT score Sequence coverage gi|325136153 hypothetical protein NMBM0579_0886 NMBM0579_0886 57kDa 80 1852 25% gi|120866758 hypothetical protein NMC1281 FAM18 56kDa 69 1863 23% gi|501178984 DNA-directed RNA polymerase subunit 154kDa 28 1808 27% gi|325140435 hypothetical protein NMBCU385_0826 CU385 57kDa 72...”

NMBM01240013_0931 YdgA family protein from Neisseria meningitidis M01-240013
Aligns to 1:500 / 516 (96.9%), covers 99.6% of PF06097, 364.7 bits

• Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein
  Takahashi, PloS one 2020
  • “...score Sequence coverage gi|325136153 hypothetical protein NMBM0579_0886 NMBM0579_0886 57kDa 102 1843 25% gi|325144519 hypothetical protein NMBM01240013_0931 57kDa 99 1758 24% gi|325140435 hypothetical protein CU385 57kDa 93 1718 24% gi|488174415 hypothetical protein 57kDa 93 1920 22% gi|485353984 DNA-directed RNA polymerase, subunit 73696 150kDa 24 1436 22% gi|488170470...”
  • “...28 1808 27% gi|325140435 hypothetical protein NMBCU385_0826 CU385 57kDa 72 1803 22% gi|325144519 hypothetical protein NMBM01240013_0931 57kDa 78 1782 24% gi|488171514 hypothetical protein 57kDa 70 1656 23% gi|488170470 hypothetical protein 57kDa 54 1267 18% gi|488186495 hypothetical protein 147kDa 12 800 12% gi|488186095 immunoglobulin A1 protease 121kDa...”

NMBCU385_0826 YdgA family protein from Neisseria meningitidis CU385
Aligns to 1:500 / 516 (96.9%), covers 99.6% of PF06097, 364.0 bits

• Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein
  Takahashi, PloS one 2020
  • “...69 1863 23% gi|501178984 DNA-directed RNA polymerase subunit 154kDa 28 1808 27% gi|325140435 hypothetical protein NMBCU385_0826 CU385 57kDa 72 1803 22% gi|325144519 hypothetical protein NMBM01240013_0931 57kDa 78 1782 24% gi|488171514 hypothetical protein 57kDa 70 1656 23% gi|488170470 hypothetical protein 57kDa 54 1267 18% gi|488186495 hypothetical protein...”

NMB1345 hypothetical protein from Neisseria meningitidis MC58
Aligns to 1:500 / 516 (96.9%), covers 99.6% of PF06097, 360.7 bits

• Sweet complexity: <i>O</i>-linked protein glycosylation in pathogenic <i>Neisseria</i>
  Børud, Frontiers in cellular and infection microbiology 2024
  • “...Hypothetical protein Membrane, Transmembrane ( Anonsen etal., 2012b ; Hadjineophytou etal., 2024 ) NGO0561 NEIS1281, NMB1345 Hypothetical protein ( Hadjineophytou etal., 2024 ) NGO0666 NEIS1287, NMB1352 Hypothetical protein ( Hadjineophytou etal., 2024 ) NGO0983 NEIS1452, NMB1523 Hypothetical protein Cell outer membrane, Membrane ( Anonsen etal., 2012b...”
• Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein
  Takahashi, PloS one 2020
  • “...in Neisseria meningitidis : New method provides insights into the physiological function of the function-unknown NMB1345 protein Genetic code expansion in Neisseria meningitidis provided a cue to function of a function-unknown protein http://orcid.org/0000-0001-8934-8043 Takahashi Hideyuki Conceptualization Data curation Formal analysis Funding acquisition Investigation Methodology Project administration...”
  • “...hypothetical proteins with unknown biological functions. Our previous genetic analyses revealed that the hypothetical protein, NMB1345, plays a crucial role in meningococcal infection in human brain microvascular endothelial cells; however, NMB1345 has no homology to any identified protein in databases and its physiological function could not...”

NMC1281 hypothetical protein from Neisseria meningitidis FAM18
Aligns to 1:496 / 512 (96.9%), covers 98.0% of PF06097, 357.7 bits

• Genetic incorporation of non-canonical amino acid photocrosslinkers in Neisseria meningitidis: New method provides insights into the physiological function of the function-unknown NMB1345 protein
  Takahashi, PloS one 2020
  • “...score Sequence coverage gi|325136153 hypothetical protein NMBM0579_0886 NMBM0579_0886 57kDa 80 1852 25% gi|120866758 hypothetical protein NMC1281 FAM18 56kDa 69 1863 23% gi|501178984 DNA-directed RNA polymerase subunit 154kDa 28 1808 27% gi|325140435 hypothetical protein NMBCU385_0826 CU385 57kDa 72 1803 22% gi|325144519 hypothetical protein NMBM01240013_0931 57kDa 78 1782...”

NGO0561 hypothetical protein from Neisseria gonorrhoeae FA 1090
Aligns to 1:500 / 516 (96.9%), covers 99.6% of PF06097, 355.7 bits

• Sweet complexity: <i>O</i>-linked protein glycosylation in pathogenic <i>Neisseria</i>
  Børud, Frontiers in cellular and infection microbiology 2024
  • “...NEIS0731, NMB0778 Hypothetical protein Membrane, Transmembrane ( Anonsen etal., 2012b ; Hadjineophytou etal., 2024 ) NGO0561 NEIS1281, NMB1345 Hypothetical protein ( Hadjineophytou etal., 2024 ) NGO0666 NEIS1287, NMB1352 Hypothetical protein ( Hadjineophytou etal., 2024 ) NGO0983 NEIS1452, NMB1523 Hypothetical protein Cell outer membrane, Membrane ( Anonsen...”
• Manganese regulation of virulence factors and oxidative stress resistance in Neisseria gonorrhoeae
  Wu, Journal of proteomics 2010
  • “...NGO1378 transport protein, ExbB exbB L 25836 NGO0425 RdgC homolog / phosphatase rdgC Q 23134 NGO0561 conserved hypothetical protein N/A N 57081 NGO0905 conserved hypothetical protein N/A N 25780 NGO1280 conserved hypothetical protein N/A N 53783 NGO1709 conserved hypothetical protein N/A N 21913 NGO1655 Neisseria-specific protein,...”

YihF / b3861 DUF945 domain-containing protein YihF from Escherichia coli K-12 substr. MG1655
b3861 putative GTP-binding protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 2:465 / 476 (97.5%), covers 99.3% of PF06097, 355.0 bits

• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b3548 b3555 b3574 b3581 b3596 b3655 b3698 b3818 b3827 b3861 b3875 b3923 b3928 b3937 b3995 b4030 b4126 b4127 b4135 b4178 b4189 b4199 b4206 b4234 b4255 b4311...”

APL_0889 hypothetical protein from Actinobacillus pleuropneumoniae L20
Aligns to 1:453 / 471 (96.2%), covers 99.6% of PF06097, 245.2 bits

• Host-pathogen interactions of Actinobacillus pleuropneumoniae with porcine lung and tracheal epithelial cells
  Auger, Infection and immunity 2009
  • “...APL_1437 APL_0116 APL_0389 APL_0704 APL_1365 APL_0110 APL_1396 APL_0756 APL_0889 Gene 1438 AUGER ET AL. INFECT. IMMUN. FIG. 6. Adherence of 12 members of the...”

NTHI1930 hypothetical protein from Haemophilus influenzae 86-028NP
Aligns to 1:464 / 480 (96.7%), covers 99.8% of PF06097, 227.8 bits

• Antisera Against Certain Conserved Surface-Exposed Peptides of Nontypeable Haemophilus influenzae Are Protective
  Whitby, PloS one 2015
  • “...NTHI1957 lppC HI1655 Lipoprotein LppC Amorphous NTHI1954 spr HI1652 Lipoprotein Spr, probable murein endopeptidase Amorphous NTHI1930 HI1236m Conserved hypothetical protein -barrel NTHI1668 tdeA HI1462 Outer membrane efflux porin TdeA -barrel NTHI1794m HI1369 Probable TonB-dependent transporter -barrel NTHI1473 lpp HI1579 15 kDa peptidoglycan-associated lipoprotein -helix NTHI1435 lolB...”

HI1236 conserved hypothetical protein from Haemophilus influenzae Rd KW20
P44132 Uncharacterized protein HI_1236 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Aligns to 1:326 / 367 (88.8%), covers 66.0% of PF06097, 179.4 bits

• Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae
  Kolker, Nucleic acids research 2004
  • “...the original list: HI0246, HI0668, HI0700, HI0847, HI1168, HI1236 and HI1709. For two more, HI0370 and HI1681, a conserved gene neighborhood (e.g. co-expression...”
• Identification of the exported proteins of the oral opportunistic pathogen Actinobacillus actinomycetemcomitans by using alkaline phosphatase fusions
  Ward, Infection and immunity 2001
  • “...(367) (371) 1301 (136) 748 (185) HI1085 HI1603 HI1701 HI1150 HI0693 HI0370 HI1236 HI1126.1 HI1628 HI0389 89 89 66 74 89 74 24 87 58 65 79 80 49 62 78 51 44 80...”
• Identification of genes coding for exported proteins of Actinobacillus actinomycetemcomitans
  Mintz, Infection and immunity 1999
  • “...pVT1063 pVT1064 pVT1067 Hypothetical protein of H. influenzae HI1236 (8) Outer membrane protein A precursor of Serratia marcescens (4) H. influenzae chaperone...”
• Functional annotation of conserved hypothetical proteins from Haemophilus influenzae Rd KW20
  Shahbaaz, PloS one 2013
  • “...23. P45074 Yes Cellular process 24. P45077 Yes Cellular process 25. P71373 Yes Yes 26. P44132 Yes Metabolism molecule 27. P44138 Yes Cellular process 28. P44140 Yes Yes 29. P44165 Yes Yes 30. P45182 Yes Yes 31. P44169 Yes Yes 32. P44183 Yes Yes 33. P56507...”

VV93_v1c13620 DUF945 family protein from Vibrio vulnificus
Aligns to 4:411 / 420 (97.1%), covers 99.6% of PF06097, 125.2 bits

• Genome analysis of clinical genotype Vibrio vulnificus isolated from seafood in Mangaluru Coast, India provides insights into its pathogenicity
  Prithvisagar, The veterinary quarterly 2023
  • “...VV93_v1c34010 0.033399 0.3692 0.422475 38 VV93_v1c14430 0.030783 0.358238 0.41394 38 VV93_v1c29010 0.025644 0.350187 0.442943 37 VV93_v1c13620 0.008062 0.347261 0.539039 37 VV93_v1c28640 0.007351 0.345656 0.522523 37 VV93_v1c45320 0.127174 0.373253 0.106349 36 VV93_v1c41410 0.027762 0.359962 0.418487 35 VV93_v1c11280 0.003939 0.338156 0.604278 34 VV93_v1c09620 0.054645 0.369931 0.4375 33 bamC...”
  • “...of these proteins are uncharacterized, with only few associated with cyclic-di-gmp binding (VV93_v1c00420, VV93_v1c08230, VV93_v1c09620, VV93_v1c13620, VV93_v1c14430, VV93_v1c15230, VV93_v1c21290, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740, VV93_v1c41410), sporulation-like domain, and lipoate-protein ligase activity (VV93_v1c00420, VV93_v1c08230, VV93_v1c13620, VV93_v1c15230, VV93_v1c22970, VV93_v1c28640, VV93_v1c34010, VV93_v1c37740), AsmA, and leucine-rich repeat domain superfamily (VV93_v1c08230, VV93_v1c34010,...”

Or search for genetic data about PF06097 in the Fitness Browser