Family Search for PF06173 (DUF986)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF06173 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STMUK_1806 DUF986 family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
Aligns to 4:151 / 152 (97.4%), covers 100.0% of PF06173, 219.6 bits

• Comparative genome analysis of the high pathogenicity Salmonella Typhimurium strain UK-1
  Luo, PloS one 2012
  • “.... In addition, two SL1344 genes, designated STM1833 and STM1896 and corresponding to UK-1 pseudogenes STMUK_1806 and STMUK_1876, were identified as being important for survival and replication in macrophage-like cells or in the spleens of BALB/cJ mice by a microarray-based transposon tracking strategy [43] . Polymorphism...”

STM1833 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 4:151 / 156 (94.9%), covers 100.0% of PF06173, 219.4 bits

• Comparative genome analysis of the high pathogenicity Salmonella Typhimurium strain UK-1
  Luo, PloS one 2012
  • “...with its evolution into a host-adapted strain [31] . In addition, two SL1344 genes, designated STM1833 and STM1896 and corresponding to UK-1 pseudogenes STMUK_1806 and STMUK_1876, were identified as being important for survival and replication in macrophage-like cells or in the spleens of BALB/cJ mice by...”

SEN1204 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 4:151 / 152 (97.4%), covers 100.0% of PF06173, 217.4 bits

• Microarray-based detection of Salmonella enterica serovar Enteritidis genes involved in chicken reproductive tract colonization
  Raspoet, Applied and environmental microbiology 2014
  • “...SEN0328 SEN0708 SEN0744A SEN0853B SEN1419 SEN1418 SEN1335 SEN1204 SEN1916 SEN2003 SEN2190 SEN2218 SEN2256 SEN2489 SEN2601 SEN4651 sppA stfA yaaU ydiM ydeE...”
• Identification of genes associated with survival of Salmonella enterica serovar Enteritidis in chicken egg albumen
  Clavijo, Applied and environmental microbiology 2006
  • “...ES37 ES41 ES50 SEN1188 yigQ SEN1861 STM3980 SEN0784 SEN1204 Putative Putative Putative Putative Putative Putative Metabolism ES3 ES5 ES7 ES12 ES20 ES22 ES25...”

YobD / b1820 DUF986 domain-containing inner membrane protein YobD from Escherichia coli K-12 substr. MG1655 (see paper)
b1820 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
c2227 Hypothetical protein yobD from Escherichia coli CFT073
Aligns to 4:151 / 152 (97.4%), covers 99.3% of PF06173, 215.8 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• The Crp-activated small noncoding regulatory RNA CyaR (RyeE) links nutritional status to group behavior
  De, Journal of bacteriology 2009
  • “...4,250.6 7.48 b0830 1,507.9 447 3.37 nadE yobD b1740 b1820 2,776.2 388.8 450.9 176.5 yeeD gabD b2012 b2661 3,063.7 531.3 ygaU b2665 yqaE Locus uspG modC b0607...”
• Intracellular Experimental Evolution of Francisella tularensis Subsp. holarctica Live Vaccine Strain (LVS) to Antimicrobial Resistance
  Mehta, ACS infectious diseases 2023 (secret)

MAKP3_17740 DUF986 family protein from Klebsiella pneumoniae
Aligns to 4:151 / 152 (97.4%), covers 99.3% of PF06173, 207.7 bits

• Stepwise Evolution of a Klebsiella pneumoniae Clone within a Host Leading to Increased Multidrug Resistance
  Yoshino, mSphere 2021
  • “...[guanine(745)-N(1)]-methyltransferase (MAKP3_17720) Del (6,792bp) Putative manganese efflux pump MntP (MAKP3_17730) Del (6,792bp) UPF0266 membrane protein (MAKP3_17740) Del (6,792bp) PTS mannose transporter subunit IID (MAKP3_17750) Del (6,792bp) Hypothetical protein (MAKP3_24060) Del (374bp) LysR family transcriptional regulator (MAKP3_24070) Del (374bp) DNA-binding transcriptional regulator RpiR (MAKP3_43790) SNP (Met185Lys) AtpG...”

lmo0779 lmo0779 from Listeria monocytogenes EGD-e
Q722D6 UPF0266 membrane protein LMOf2365_0797 from Listeria monocytogenes serotype 4b (strain F2365)
Aligns to 6:154 / 155 (96.1%), covers 100.0% of PF06173, 177.6 bits

• Identification of Listeria monocytogenes Genes Contributing to Oxidative Stress Resistance under Conditions Relevant to Host Infection
  Mains, Infection and immunity 2021
  • “...required for full oxidative stress resistance only in the context of PrfA activation. One gene, lmo0779, predicted to encode an uncharacterized protein, and two additional genes known as cbpA and ygbB, encoding a cyclic di-AMP binding protein and a 2-C-methyl-d-erythritol 2,4-cyclodiphosphate synthase, respectively, contribute to the...”
  • “...strains while exhibiting no significant contribution in wild-type L. monocytogenes Transposon inactivation of cbpA and lmo0779 in a prfA* background led to reduced virulence in the liver of infected mice. These results indicate that L. monocytogenes calls upon specific bacterial factors for stress resistance in the...”
• Proteomic Exploration of Listeria monocytogenes for the Purpose of Vaccine Designing Using a Reverse Vaccinology Approach
  Srivastava, International journal of peptide research and therapeutics 2021
  • “...2.221 Non-allergen 151 Q71WI2 2.143 Non-allergen 152 Q71VQ6 1.957 Non-allergen 153 Q724G8 1.5 Non-allergen 154 Q722D6 1.506 Non-allergen 155 Q71XL9 0.743 Non-allergen 156 Q720B5 0.934 Non-allergen 157 Q71XA1 1.344 Non-allergen 158 A6X137 0.435 Non-allergen 159 Q71Z99 0.409 Non-allergen 160 Q71YM0 1.017 Non-allergen 161 Q724P3 0.613 Non-allergen...”
  • “...DRB1_1301 MSTKNGRRV 13.5 1.7661 Antigen DRB1_1301 FRTRMSTKN 39.7 1.2896 Antigen DRB1_1301 RMSTKNGRR 49.3 2.0073 Antigen Q722D6 DRB1_0101 YALLFFPYA 1222 1.9423 Antigen DRB1_0701 IFLFAANIL 179.2 1.1164 Antigen DRB1_1301 LSVKLRSRG 15 1.128 Antigen DRB1_1301 VLSVKLRSR 21.1 1.3894 Antigen Q71XL9 DRB1_0101 GIILLGFRL 330.6 1.0131 Antigen DRB1_0101 YFLAKLPFL 673.5 1.4522...”

LMRG_00467 hypothetical protein from Listeria monocytogenes 10403S
Aligns to 6:154 / 155 (96.1%), covers 100.0% of PF06173, 176.4 bits

• Identification of Listeria monocytogenes Genes Contributing to Oxidative Stress Resistance under Conditions Relevant to Host Infection
  Mains, Infection and immunity 2021 (secret)

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