Family Search for PF06174 (DUF987)

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PF06174 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YpjJ / b4548 CP4-57 prophage; DUF987 domain-containing protein YpjJ from Escherichia coli K-12 substr. MG1655
Aligns to 1:65 / 66 (98.5%), covers 100.0% of PF06174, 138.9 bits

YkfH / b4504 DUF987 domain-containing protein YkfH from Escherichia coli K-12 substr. MG1655
Aligns to 1:65 / 73 (89.0%), covers 98.5% of PF06174, 136.2 bits

c4574 Hypothetical protein yeeT from Escherichia coli CFT073
Aligns to 1:65 / 73 (89.0%), covers 100.0% of PF06174, 135.6 bits

• Making connections between novel transcription factors and their DNA motifs
  Tan, Genome research 2005
  • “...mlc c582_e purR c595_e trpR Novel TF-DNA motif pairs c4574 ascG c352_o baeR c580_e cadC c489_o hydG c6105_o idnR c7434_o lrhA c645_o nlp c646_o ntrC c648_o pdhR...”

YeeT / b2003 CP4-44 prophage; DUF987 domain-containing protein YeeT from Escherichia coli K-12 substr. MG1655
c2530 Hypothetical protein yeeT from Escherichia coli CFT073
b2003 CP4-44 prophage; predicted protein from Escherichia coli str. K-12 substr. MG1655
EC042_RS17225 DUF987 domain-containing protein from Escherichia coli 042
Aligns to 1:65 / 73 (89.0%), covers 100.0% of PF06174, 133.8 bits

• Molecular mechanisms of steric pressure generation and membrane remodeling by disordered proteins
  Houser, Biophysical journal 2022 (secret)
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12
  Sabina, Journal of bacteriology 2003
  • “...b4060 b1630 b3107 b3062 b2578 b1325 b0572 b3583 b3476 b4200 b0040 b2003 b2460 b0732 b4202 b4201 b4194 b1316 b4203 b2268 b2488 b4182 b3144 19 16 15 15 15 14 14...”
  • “...rpmJ wbbJ rplO b1593 gapC_2 dadA b0354 b3857 b2034 b2003 b1983 b4185 b4202 b3845 b2447 b3298 b1601 b2272 b4200 b3313 b3057 b0580 b3312 b0833 b3683 b4159 b4201...”
• Overexpression of the third H-NS paralogue H-NS2 compensates fitness loss in hns mutants of the enteroaggregative Escherichia coli strain 042
  Prieto, Scientific reports 2020
  • “...(hypothetical protein) 8.3 EC042_RS13250 (hypothetical protein) 8.2 EC042_RS20520 (putative acetyltransferase) 8.1 EC042_RS23195 (hypothetical protein) 8.0 EC042_RS17225 (hypothetical protein) 8.0 We also assessed whether, at 25C, overexpression of H-NS2 can reduce expression of those genes that are upregulated in an H-NS mutant. To that end, we selected...”

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