Family Search for PF06196 (DUF997)

PF06196 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

ECOLIN_RS18710 YhdT family protein from Escherichia coli Nissle 1917
Aligns to 7:78 / 80 (90.0%), covers 98.7% of PF06196, 98.8 bits

• Identification of a gene cluster for D-tagatose utilization in Escherichia coli B2 phylogroup
  Ha, iScience 2022
  • “...completely absent in K-12 and was located between accC (ECOLIN_RS18665) encoding biotin carboxylase and yhdT (ECOLIN_RS18710) encoding a conserved inner membrane protein ( Figure2 A). Figure2 Gene cluster for D-tagatose degradation in E.coli Nissle 1917 (EcN) (A) Genetic organization of the six-membered gene cluster on the...”

YhdT / b3257 DUF997 domain-containing protein YhdT from Escherichia coli K-12 substr. MG1655
YHDT_ECOLI / P45566 Uncharacterized membrane protein YhdT from Escherichia coli (strain K12) (see paper)
Aligns to 7:78 / 80 (90.0%), covers 98.7% of PF06196, 98.6 bits

c4022 Hypothetical protein yhdT from Escherichia coli CFT073
Aligns to 13:84 / 86 (83.7%), covers 98.7% of PF06196, 98.5 bits

• Genome-wide analysis of the response to nitric oxide in uropathogenic Escherichia coli CFT073
  Mehta, Microbial genomics 2015
  • “...phage baseplate assembly protein 9.55 wcaE c2581 Putative colanic acid biosynthesis glycosyltransferase WcaE 9.48 yhdT c4022 Hypothetical protein YhdT 9.42 * The CFT073 3X mutant was cultured anaerobically in the presence and absence of nitrate, as described in the text. Fold change is the ratio of...”

PM1090 unknown from Pasteurella multocida subsp. multocida str. Pm70
Aligns to 9:80 / 83 (86.7%), covers 100.0% of PF06196, 94.6 bits

• Isolation and sequencing of a temperate transducing phage for Pasteurella multocida
  Campoy, Applied and environmental microbiology 2006
  • “...of this work. Strain Relevant features Source PM108 PM403 PM1090 PM1091 PM1092 PM1093 Wild type and lysogenic for F108 Wild type and F108 sensitive Like PM403,...”
  • “...times each codon appears in the genome. (strain PM1090) were determined in triplicate as reported previously (12). Basically, groups of five mice were injected...”

YPO3657a putative membrane protein from Yersinia pestis CO92
YPTB3573 putative membrane protein from Yersinia pseudotuberculosis IP 32953
Aligns to 7:78 / 80 (90.0%), covers 98.7% of PF06196, 93.8 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...0.576 (0.002) YPTB3486 YPO0569A 0.606 (0.026) YPTB3510 YPO3565 putative membrane protein 0.745 (0.02) YPTB3573 (panF) YPO3657A sodium/pantothenate symporteR 0.732 (0.028) YPTB3581 YPO3649 putative gamma carboxymuconolactone decarboxylase 0.573 (0.01) YPTB3617 or2852 putative Rhs accessory genetic element 0.632 (0.037) YPTB3622 YPO3607 conserved hypothetical protein 0.589 (0.014) YPTB3748 YPO0153...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...0.674 (0.02) 0.576 (0.002) YPTB3486 YPO0569A 0.606 (0.026) YPTB3510 YPO3565 putative membrane protein 0.745 (0.02) YPTB3573 (panF) YPO3657A sodium/pantothenate symporteR 0.732 (0.028) YPTB3581 YPO3649 putative gamma carboxymuconolactone decarboxylase 0.573 (0.01) YPTB3617 or2852 putative Rhs accessory genetic element 0.632 (0.037) YPTB3622 YPO3607 conserved hypothetical protein 0.589 (0.014)...”

HD0673 conserved hypothetical protein from Haemophilus ducreyi 35000HP
Aligns to 9:80 / 82 (87.8%), covers 96.1% of PF06196, 88.6 bits

• Haemophilus ducreyi Seeks Alternative Carbon Sources and Adapts to Nutrient Stress and Anaerobiosis during Experimental Infection of Human Volunteers
  Gangaiah, Infection and immunity 2016
  • “...8/9 genes identified by RNA-Seq (Fig. 3). While HD0673 was repressed 3.63-fold by RNA-Seq, it was not differentially expressed by qRT-PCR (1.01-fold) (Fig. 3)....”
  • “...guaB Operon_0604 HD1504 HD_RS06150 guaA HD0250 HD0673 HD1089 HD1354 HD1362 HD1614 HD_RS00990 HD_RS02750 HD_RS04480 HD_RS05525 HD_RS05560 HD_RS06570 HD0458...”

HS_0567a hypothetical protein from Haemophilus somnus 129PT
Aligns to 7:78 / 78 (92.3%), covers 98.7% of PF06196, 83.1 bits

• RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336"
  Kumar, PloS one 2012
  • “...hypothetical protein AM305_05314 [ Actinobacillus minor NM305] HSP31 1852968 1853201 + 234 YP_718779.1 hypothetical protein HS_0567a [ Haemophilus somnus 129PT] HSP32 1959818 1959922 105 ZP_04977712.1 hypothetical protein MHA_1177 [ Mannheimia haemolytica PHL213] HSP33 1962885 1963013 + 129 ZP_05993368.1 hypothetical protein COI_2717 [ Mannheimia haemolytica serotype A2...”

BB0813 B. burgdorferi predicted coding region BB0813 from Borrelia burgdorferi B31
Aligns to 2:58 / 58 (98.3%), covers 71.4% of PF06196, 27.6 bits

• DNA microarray assessment of putative Borrelia burgdorferi lipoprotein genes
  Liang, Infection and immunity 2002
  • “...bb0628 bb0644 bb0664 bb0689 bb0696 bb0740 bb0758 bb0760 bb0806 bb0813 bb0815 bb0823 bb0832 bb0840 bb0844 B. burgdorferi 297 N40 B. garinii IP90 B. afzelii P/Gau...”

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