Family Search for PF06198 (DUF999)

PF06198 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YI41_SCHPO / P0CS86 UPF0494 membrane protein C1348.01 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPBCPT2R1.01c DUF999 protein family 9 from Schizosaccharomyces pombe
SPBC1348.01 S. pombe specific DUF999 protein family 5 from Schizosaccharomyces pombe
Aligns to 21:163 / 269 (53.2%), covers 100.0% of PF06198, 304.4 bits

• Posttranslational Arginylation Enzyme Arginyltransferase1 Shows Genetic Interactions With Specific Cellular Pathways in vivo
  Wiley, Frontiers in physiology 2020
  • “...3.3118 RNA-binding protein Msa1 RIM4 med1 SPAC2F7.04 0.00099746 3.29124 Mediator complex subunit Med1 MED1 MED1 SPBCPT2R1.01c 0.00106888 3.27174 S. pombe specific DUF999 protein family 9 coq7 SPBC337.15c 0.0010739 3.27041 Ubiquinone biosynthesis protein Coq7 CAT5 COQ7 spn4 SPAC9G1.11c 0.00109358 3.26527 Mitotic septin Spn4 CDC12 Mam3 SPAP11E10.02c 0.00146666...”
• The Fission Yeast RNA-Binding Protein Meu5 Is Involved in Outer Forespore Membrane Breakdown during Spore Formation
  Zhang, Journal of fungi (Basel, Switzerland) 2020
  • “...metabolism (predicted) 63.6 gsk31 serine/threonine protein kinase Gsk31 (predicted) 66.7 gor1 glyoxylate reductase (predicted) 66.7 SPBC1348.01 S. pombe specific DUF999 protein family 5 67.0 isp3 (meu4) spore wall structural constituent Isp3 70.7 sdu1 (mug67, hag1) PPPDE peptidase family deubiquitinase/desumoylase Sdu1 (predicted) 71.1 psk1 ribosomal protein S6...”
• Cuf2 is a novel meiosis-specific regulatory factor of meiosis maturation
  Ioannoni, PloS one 2012
  • “...induction, the results indicate that the levels of the SPAC1B2.03c + , wtf13 + , SPBC1348.01 + and meu14 + transcripts in cuf2/cuf2 mutant cells were derepressed above those observed in cuf2 + /cuf2 + cells under the same conditions (as indicated with arrows and brackets)....”
  • “...the relative expression levels of four middle-phase meiotic genes: SPAC1B2.03c + , wtf13 + , SPBC1348.01 + and meu14 + . In the case of the cuf2/cuf2 mutant strain, at all points examined after 10 h, the levels of these four mRNAs were up-regulated as compared...”

SPAC212.01c S. pombe specific DUF999 family protein 2 from Schizosaccharomyces pombe
Aligns to 21:163 / 280 (51.1%), covers 100.0% of PF06198, 304.2 bits

• The Fission Yeast RNA-Binding Protein Meu5 Is Involved in Outer Forespore Membrane Breakdown during Spore Formation
  Zhang, Journal of fungi (Basel, Switzerland) 2020
  • “...SPAC212.04c S. pombe specific DUF999 family protein 1 77.3 meu7 (aah4) alpha-amylase homolog Aah4 77.5 SPAC212.01c S. pombe specific DUF999 family protein 2 78.3 pmp31 (mug75) plasma membrane proteolipid Pmp31 79.0 mug110 Schizosaccharomyces specific protein Mug110 79.2 mde10 (mug139) spore wall assembly ADAM family peptidase Mde10...”
• Regulation of transcriptional silencing and chromodomain protein localization at centromeric heterochromatin by histone H3 tyrosine 41 phosphorylation in fission yeast
  Ren, Nucleic acids research 2018
  • “...the Y41F mutant: two Tf retrotransposons ( tf27, tf28 ) and three uncharacterised genes ( SPAC212.01c, SPAC977.05c, SPAC750.08c ). These uncharacterised genes are all located within the subtelomeric region, situated within 60 kb from the telomere (Figure 1C ). Real time PCR was conducted on several...”
• Conserved and Diverged Functions of the Calcineurin-Activated Prz1 Transcription Factor in Fission Yeast
  Chatfield-Reed, Genetics 2016
  • “...SPAC18B11.03c , SPCC1529.01, ost2 + , mam2 + , omh1 + , fur4 + , SPAC212.01c , bgs1 + , isp5 + , ggc1 + , cfh2 + , rsn1 + , psd2 + , SPAC630.04c , erg1 + , SPBC1348.03 , meu22 + , tco1...”

YLZ6_SCHPO / Q9P3E5 UPF0494 membrane protein C750.06c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPAC750.06c S. pombe specific DUF999 protein family 4 from Schizosaccharomyces pombe
Aligns to 21:163 / 280 (51.1%), covers 100.0% of PF06198, 301.0 bits

• Transposon Removal Reveals Their Adaptive Fitness Contribution
  Cranz-Mileva, Genome biology and evolution 2024
  • “...differential expression between the WT and Tf0 strains ( Fig. 4d ). One of these, SPAC750.06c, is located in the subtelomeric region, which is repetitive and often rearranged leading to artifactual results in RNA-seq experiments ( Oizumi et al. 2021 ), so we did not characterize...”
• The Fission Yeast RNA-Binding Protein Meu5 Is Involved in Outer Forespore Membrane Breakdown during Spore Formation
  Zhang, Journal of fungi (Basel, Switzerland) 2020
  • “...Ubp4 52.8 fis1 mitochondrial fission protein Fis1 (predicted) 53.0 dsk1 SR protein-specific kinase Dsk1 54.6 SPAC750.06c S. pombe specific DUF999 protein family 4 56.4 uvi15 tail anchored plasma membrane protein Uvi15 57.8 pcy1 (pct1) choline phosphate cytidylyltransferase Pcy1 (predicted) 59.1 meu6 pleckstrin homology domain protein Meu6...”

YM04_SCHPO / Q9HGP8 UPF0494 membrane protein C212.04c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPAC212.04c S. pombe specific DUF999 family protein 1 from Schizosaccharomyces pombe
Aligns to 21:163 / 288 (49.7%), covers 100.0% of PF06198, 294.8 bits

• The Fission Yeast RNA-Binding Protein Meu5 Is Involved in Outer Forespore Membrane Breakdown during Spore Formation
  Zhang, Journal of fungi (Basel, Switzerland) 2020
  • “...beta (WD repeat) subunit Git5 77.0 mug111 major facilitator family transmembrane transporter Mug111 (predicted) 77.3 SPAC212.04c S. pombe specific DUF999 family protein 1 77.3 meu7 (aah4) alpha-amylase homolog Aah4 77.5 SPAC212.01c S. pombe specific DUF999 family protein 2 78.3 pmp31 (mug75) plasma membrane proteolipid Pmp31 79.0...”
• AnABlast: a new in silico strategy for the genome-wide search of novel genes and fossil regions
  Jimenez, DNA research : an international journal for rapid publication of reports on genes and genomes 2015
  • “...type DNA helicase coding sequences ( Schizosaccharomyces pombe ref|NP_595040.1|, e-value: 0,0) and DUF999 family proteins (SPAC212.04c, e-value: 0,0). Pombase annotations and colour codes for reading frames of the analysed genomic intervals are shown. This figure is available in black and white in print and in colour...”
  • “...respectively, harbour identical rearranged structures (see Fig. 7 E and F). A fragment of the SPAC212.04c gene (DUF999 family protein 1) can also be observed in both subtelomeric intervals (see in Fig. 7 ), albeit only in the case of Chromosome II this gene fragment is...”

SPBPB2B2.14c S. pombe specific DUF999 protein family 8 from Schizosaccharomyces pombe
Aligns to 1:139 / 230 (60.4%), covers 100.0% of PF06198, 259.9 bits

• Characterization of genome-reduced fission yeast strains
  Sasaki, Nucleic acids research 2013
  • “...21 (BLT) and 40 kb (BRT) from the SPAC977.06 (ALT), SPAC750.02c (ART), SPBC1348.07 (BLT) and SPBPB2B2.14c (BRT) genes, respectively ( Supplementary Figure S3 ). Therefore, 200 bp of direct repeat sequence for use as a Latour fragment was designed from the internal sequence of SPBCPT2R1.08c/ tlh2...”

SPBPB2B2.07c S. pombe specific DUF999 protein family 7 from Schizosaccharomyces pombe
Aligns to 21:159 / 165 (84.2%), covers 100.0% of PF06198, 259.3 bits

• The Fission Yeast RNA-Binding Protein Meu5 Is Involved in Outer Forespore Membrane Breakdown during Spore Formation
  Zhang, Journal of fungi (Basel, Switzerland) 2020
  • “...cytochrome c 4.3 are2 acyl-CoA-sterol acyltransferase Are2 26.8 pmp3 plasma membrane proteolipid Pmp3 (predicted) 27.9 SPBPB2B2.07c S. pombe specific DUF999 protein family 7 29.8 mug129 Schizosaccharomyces specific protein Mug129 42.1 agn2 glucan endo-1,3-alpha-glucosidase Agn2 43.8 mug63 TLDc domain protein 1, implicated in response to oxidative stress...”
• A Heterochromatin Domain Forms Gradually at a New Telomere and Is Dynamic at Stable Telomeres
  Wang, Molecular and cellular biology 2018
  • “...:: arg3 + hhf2 :: his3 + hhf3 :: nat R leu1-32 :: pFA-LEU2-TETp -I-SceI SPBPB2B2.07c repaired 0-bp survivor derived from YJRE116 YJRE182 h ade6-210 arg3-D4 his3-D1 leu1-32 ura4-D18 hhf1 :: arg3 + hhf2 :: his3 + hhf3 :: nat R leu1-32 :: pFA-LEU2-TETp -I-SceI gal1-3...”
• Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation
  Nugent, BMC genomics 2010
  • “...SPAC5H10.02c 2.46 3.89E-11 SPBC1198.01 3.55 7.19E-16 SPBPB2B2.06c 1.93 0.000987078 SPCC663.08c 2.54 0.009807792 SPAC22A12.17c 3.57 1.96E-11 SPBPB2B2.07c 1.93 9.41E-10 SPBC725.10 2.57 9.52E-05 SPAPB1A11.03 3.59 1.50E-13 nta1 1.94 3.20E-06 SPBC83.19c 2.58 3.49E-12 SPAC1F8.04c 3.59 5.41E-07 SPCC191.01 1.94 5.61E-06 SPCC1393.12 2.58 4.35E-11 SPAC11D3.01c 3.61 1.72E-07 SPCC70.04c 1.95 2.09E-06 SPBPB2B2.08...”

SPAC977.06 S. pombe specific DUF999 family protein 3 from Schizosaccharomyces pombe
Aligns to 1:139 / 189 (73.5%), covers 100.0% of PF06198, 258.7 bits

• The Fission Yeast RNA-Binding Protein Meu5 Is Involved in Outer Forespore Membrane Breakdown during Spore Formation
  Zhang, Journal of fungi (Basel, Switzerland) 2020
  • “...synthase Mok14 99.0 mug113 GIY-YIGT nuclease superfamily protein 99.0 ndk1 nucleoside diphosphate kinase Ndk1 99.0 SPAC977.06 S. pombe specific DUF999 family protein 3 unable to sporulate...”
• Histone deacetylation promotes transcriptional silencing at facultative heterochromatin
  Watts, Nucleic acids research 2018
  • “...and Supplementary Tables S1 and S2 ), and multiple membrane proteins including efr3, pdh1, SPCC1235.18/17, SPAC977.06, ght1, ght5, ght6 and ght8 ( Supplementary Figure S6 and Supplementary Tables S1 and S2 ). Regions encoding for repetitive selfish elements also appear to depend on HDACs for transcriptional...”
• Characterization of genome-reduced fission yeast strains
  Sasaki, Nucleic acids research 2013
  • “...terminal regions are 41 (ALT), 20 (ART), 21 (BLT) and 40 kb (BRT) from the SPAC977.06 (ALT), SPAC750.02c (ART), SPBC1348.07 (BLT) and SPBPB2B2.14c (BRT) genes, respectively ( Supplementary Figure S3 ). Therefore, 200 bp of direct repeat sequence for use as a Latour fragment was designed...”

YHE7_SCHPO / Q9HDU8 UPF0494 membrane protein PB2B2.07c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 21:159 / 250 (55.6%), covers 100.0% of PF06198, 257.8 bits

YI47_SCHPO / Q9P3V3 UPF0494 membrane protein C1348.07 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
SPBC1348.07 S. pombe specific DUF999 protein family 6 from Schizosaccharomyces pombe
Aligns to 1:139 / 230 (60.4%), covers 100.0% of PF06198, 257.5 bits

• Characterization of genome-reduced fission yeast strains
  Sasaki, Nucleic acids research 2013
  • “...(ALT), 20 (ART), 21 (BLT) and 40 kb (BRT) from the SPAC977.06 (ALT), SPAC750.02c (ART), SPBC1348.07 (BLT) and SPBPB2B2.14c (BRT) genes, respectively ( Supplementary Figure S3 ). Therefore, 200 bp of direct repeat sequence for use as a Latour fragment was designed from the internal sequence...”

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