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Family Search for PF06237 (SLC52_ribofla_tr)

Running HMMer for PF06237

PF06237 hits 18 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

S52A3_MOUSE / Q9D6X5 Solute carrier family 52, riboflavin transporter, member 3; Riboflavin transporter 2; RFT2 from Mus musculus (Mouse) (see paper)
NP_081448 solute carrier family 52, riboflavin transporter, member 3 isoform 1 precursor from Mus musculus
Aligns to 1:450 / 460 (97.8%), covers 100.0% of PF06237, 587.9 bits

S52A3_RAT / Q4FZU9 Solute carrier family 52, riboflavin transporter, member 3; Riboflavin transporter 2; rRFT2 from Rattus norvegicus (Rat) (see paper)
Aligns to 1:453 / 463 (97.8%), covers 100.0% of PF06237, 586.5 bits

S52A3_HUMAN / Q9NQ40 Solute carrier family 52, riboflavin transporter, member 3; Riboflavin transporter 2; hRFT2 from Homo sapiens (Human) (see 12 papers)
TC 2.A.125.1.2 / Q9NQ40 Solute carrier family 52, riboflavin transporter, member 3 (Riboflavin transporter 2) (hRFVT2, RFVT3). Riboflavin transporter deficiency (RTD) is a rare neurological condition that encompasses the Brown-Vialetto-Van Laere and Fazio-Londe syndromes from Homo sapiens (see 7 papers)
Aligns to 1:459 / 469 (97.9%), covers 100.0% of PF06237, 574.4 bits

NP_651901 riboflavin transporter from Drosophila melanogaster
Aligns to 72:482 / 487 (84.4%), covers 99.8% of PF06237, 527.2 bits

XP_006521214 solute carrier family 52, riboflavin transporter, member 2 isoform X1 from Mus musculus
Aligns to 8:440 / 450 (96.2%), covers 99.5% of PF06237, 513.9 bits

S52A2_RAT / B5MEV3 Solute carrier family 52, riboflavin transporter, member 2; Porcine endogenous retrovirus A receptor 2; Protein GPR172B; Riboflavin transporter 1; rRFT1 from Rattus norvegicus (Rat) (see 2 papers)
XP_006241888 solute carrier family 52, riboflavin transporter, member 2 isoform X2 from Rattus norvegicus
Aligns to 8:440 / 450 (96.2%), covers 99.5% of PF06237, 512.8 bits

S52A2_HUMAN / Q9HAB3 Solute carrier family 52, riboflavin transporter, member 2; Porcine endogenous retrovirus A receptor 1; PERV-A receptor 1; Protein GPR172A; Riboflavin transporter 3; hRFT3 from Homo sapiens (Human) (see 9 papers)
TC 2.A.125.1.3 / Q9HAB3 Solute carrier family 52, riboflavin transporter, member 2 (Porcine endogenous retrovirus A receptor 1) (PERV-A receptor 1) (Protein GPR172A) (Riboflavin transporter 2) (hRFVT2) from Homo sapiens (see 6 papers)
Aligns to 8:435 / 445 (96.2%), covers 99.5% of PF06237, 500.9 bits

TC 2.A.125.1.1 / B5MEV1 The riboflavin (Km = 40μM) transporter, RFT1, SLC52A1 from Homo sapiens (see 2 papers)
Aligns to 8:438 / 448 (96.2%), covers 99.5% of PF06237, 498.3 bits

S52A1_HUMAN / Q9NWF4 Solute carrier family 52, riboflavin transporter, member 1; Porcine endogenous retrovirus A receptor 2; PERV-A receptor 2; huPAR-2; Protein GPR172B; Riboflavin transporter 1; hRFT1 from Homo sapiens (Human) (see 4 papers)
XP_011522253 solute carrier family 52, riboflavin transporter, member 1 isoform X1 from Homo sapiens
Aligns to 8:438 / 448 (96.2%), covers 99.5% of PF06237, 498.0 bits

S52A2_PIG / Q863Y7 Solute carrier family 52, riboflavin transporter, member 2; Endogenous retrovirus A receptor; Protein GPR172B; Riboflavin transporter 1 from Sus scrofa (Pig) (see paper)
Aligns to 8:436 / 446 (96.2%), covers 99.5% of PF06237, 497.9 bits

S52A2_PAPHA / Q863Y8 Solute carrier family 52, riboflavin transporter, member 2; Porcine endogenous retrovirus A receptor 2; PERV-A receptor 2; Protein GPR172B; Riboflavin transporter 1; RFT1 from Papio hamadryas (Hamadryas baboon) (see paper)
Aligns to 8:438 / 448 (96.2%), covers 99.5% of PF06237, 494.9 bits

LOC103317747 solute carrier family 52, riboflavin transporter, member 3-A-like from Nasonia vitripennis
Aligns to 27:471 / 477 (93.3%), covers 99.5% of PF06237, 465.2 bits

S52AA_CAEEL / Q3LFN0 Riboflavin transporter rft-1; Solute carrier family 52, riboflavin transporter rft-1 from Caenorhabditis elegans (see paper)
NP_001033515 Riboflavin transporter rft-1 from Caenorhabditis elegans
Aligns to 3:422 / 427 (98.4%), covers 99.5% of PF06237, 458.1 bits

NP_001256040 Riboflavin transporter rft-2 from Caenorhabditis elegans
Aligns to 3:455 / 463 (97.8%), covers 99.8% of PF06237, 441.6 bits

S52AB_CAEEL / G4SDH4 Riboflavin transporter rft-2; Solute carrier family 52, riboflavin transporter rft-2 from Caenorhabditis elegans (see 2 papers)
Aligns to 3:468 / 476 (97.9%), covers 99.8% of PF06237, 440.7 bits

LOC101739734 uncharacterized protein LOC101739734 from Bombyx mori
Aligns to 32:431 / 1047 (38.2%), covers 99.5% of PF06237, 417.9 bits

XP_016869311 solute carrier family 52, riboflavin transporter, member 2 isoform X2 from Homo sapiens
2 alignments in 8:271 / 281 (94.0%), covering up to 45.7% of PF06237, 275.4 bits

Smp_194010 hypothetical protein from Schistosoma mansoni
Aligns to 10:205 / 210 (93.3%), covers 39.4% of PF06237, 179.1 bits

Or search for genetic data about PF06237 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory