Family Search for PF06299 (DUF1045)

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PF06299 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

RSP_2937 hypothetical protein from Rhodobacter sphaeroides 2.4.1
Aligns to 63:220 / 230 (68.7%), covers 99.4% of PF06299, 205.2 bits

• Convergence of the transcriptional responses to heat shock and singlet oxygen stresses
  Dufour, PLoS genetics 2012
  • “...Fermentation RSP_3164 Glycolysis/gluconeogenesis RSP_2736, RSP_4045, RSP_4211 Other RSP_0392, RSP_2294 Pentose phosphate pathway RSP_2734, RSP_2735 Sugars RSP_2937, RSP_3138 Biosynthesis of cofactors, prosthetic groups, and carriers Glutathione and analogs RSP_3272 Heme, porphyrin, and cobalamin RSP_1197, RSP_1692, RSP_2831 Menaquinone and ubiquinone RSP_1175, RSP_1338, RSP_1492, RSP_1869 Other RSP_0750, RSP_0898, RSP_2314...”

mll4975 contains weak similarity to Xylose Isomerase (E.C.5.3.1.5) from Mesorhizobium loti MAFF303099
Aligns to 61:219 / 235 (67.7%), covers 100.0% of PF06299, 197.1 bits

• Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily
  Mazumder, Nucleic acids research 2002
  • “...families. The other family is restricted to the proteobacteria and is typified by the protein mll4975 from Mesorhizobium loti . This family is represented by multiple copies in M.loti and is characterized by the presence of an insert after helix 1, a large helical insert after...”
  • “...strongly supported (RELL bootstrap: 96%) a higher order relationship between the YjcG family and the mll4975 family. This clade is also supported by a unique motif of the form bsPFxl (where b, big; s, small; l, aliphatic residue) present after strand 2. Phylogenetic analysis and clustering...”

Atu2329 hypothetical protein from Agrobacterium tumefaciens str. C58 (Cereon)
Aligns to 61:219 / 235 (67.7%), covers 100.0% of PF06299, 194.7 bits

• Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria
  Yuan, Nucleic acids research 2006
  • “...Probable ABC transporter periplasmic binding C 1 SMb20876 AATTCGTCAATCTGTCAC 98 0.43 S.meliloti Hypothetical protein 2 Atu2329 CGGTCACACGCCTGTCAT 161 0.51 A.tumefaciens Conserved hypothetical protein D 1 Smc00171 ATGTCATCTTCCTGAAAC 52 0.47 S.meliloti Conserved hypothetical protein 2 Atu1649 CTGTCATGTTGCTGAAAC 64 0.51 A.tumefaciens Conserved hypothetical protein 3 bll5904 CGGTCATCCCCCTGTCAC 24...”

MED193_17644 hypothetical protein from Roseobacter sp. MED193
A3X3K7 Phosphonate metabolism protein from Roseobacter sp. MED193
Aligns to 32:189 / 202 (78.2%), covers 99.4% of PF06299, 189.4 bits

• Bacterial catabolism of membrane phospholipids links marine biogeochemical cycles
  Westermann, Science advances 2023
  • “...0.01 N/D N/D MED193_17634 A3X3K9 PhnL C-P lyase, supports PhnI ++ 4.14 0.02 N/D N/D MED193_17644 A3X3K7 Putative C-P lyase DUF1045 ++ 3.98 0.02 N/D N/D MED193_17649 A3X3K4 PhnM C-P lyase, phosphodiesterase, releases pyrophosphate ++ 5.07 0.28 N/D N/D MED193_18169 A3X3A1 Polymerase/histidinol phosphatase (N-terminal), PHP (C-terminal)...”
• Bacterial catabolism of membrane phospholipids links marine biogeochemical cycles
  Westermann, Science advances 2023
  • “...N/D N/D MED193_17634 A3X3K9 PhnL C-P lyase, supports PhnI ++ 4.14 0.02 N/D N/D MED193_17644 A3X3K7 Putative C-P lyase DUF1045 ++ 3.98 0.02 N/D N/D MED193_17649 A3X3K4 PhnM C-P lyase, phosphodiesterase, releases pyrophosphate ++ 5.07 0.28 N/D N/D MED193_18169 A3X3A1 Polymerase/histidinol phosphatase (N-terminal), PHP (C-terminal) ++...”

duf₁₀₄₅ / Q92UG1 phosphoribosyl 1,2-cyclic phosphate phosphodiesterase (EC 3.1.4.55) from Rhizobium meliloti (strain 1021) (see 2 papers)
SMb20876 HYPOTHETICAL PROTEIN from Sinorhizobium meliloti 1021
Aligns to 61:219 / 265 (60.0%), covers 98.7% of PF06299, 183.9 bits

• Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria
  Yuan, Nucleic acids research 2006
  • “...quinolinate synthetase A protein 22 SMc04053 Gene fusion b TTGACATAAAATAGTAAT 142 0.39 Hypothetical protein 23 SMb20876 Gene fusion b,c AATTCGTCAATCTGTCAC 98 0.43 Hypothetical protein *1 24 SMc00819 Gene fusion b,c CTGTCGTTCAGCCGTCAC 50 0.6 katA , catalase hydroperoxidase HPII *4 25 SMa1961 Microarray c CTGACAAACCGCCTTAGC 128 0.37...”
  • “...5 y4fP ATGTAATTAAACTGACAT +24 0.53 Rhizobium sp. NGR234 Probable ABC transporter periplasmic binding C 1 SMb20876 AATTCGTCAATCTGTCAC 98 0.43 S.meliloti Hypothetical protein 2 Atu2329 CGGTCACACGCCTGTCAT 161 0.51 A.tumefaciens Conserved hypothetical protein D 1 Smc00171 ATGTCATCTTCCTGAAAC 52 0.47 S.meliloti Conserved hypothetical protein 2 Atu1649 CTGTCATGTTGCTGAAAC 64 0.51...”

BPSL2859 conserved hypothetical protein from Burkholderia pseudomallei K96243
Aligns to 71:229 / 265 (60.0%), covers 100.0% of PF06299, 168.4 bits

• Genome-wide expression analysis of Burkholderia pseudomallei infection in a hamster model of acute melioidosis
  Tuanyok, Infection and immunity 2006
  • “...Gene 1 Mean BPSL2082 BPSL2696 BPSL2756 BPSL2786 BPSL2859 BPSL2902 BPSL3050 BPSS0163 BPSS0204 BPSS0464 BPSS0622 BPSS0834 BPSS0909 BPSS0925 a Putative exported...”

Or search for genetic data about PF06299 in the Fitness Browser