PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06417 (DUF1077)

Running HMMer for PF06417

PF06417 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

D4A0W1 ER membrane protein complex subunit 4 from Rattus norvegicus
Q9CZX9 ER membrane protein complex subunit 4 from Mus musculus
Aligns to 56:170 / 183 (62.8%), covers 97.5% of PF06417, 157.4 bits

EMC4_HUMAN / Q5J8M3 ER membrane protein complex subunit 4; Cell proliferation-inducing gene 17 protein; Transmembrane protein 85 from Homo sapiens (Human) (see 7 papers)
NP_057538 ER membrane protein complex subunit 4 isoform a from Homo sapiens
Aligns to 56:170 / 183 (62.8%), covers 97.5% of PF06417, 157.4 bits

XP_001657467 ER membrane protein complex subunit 4 isoform X1 from Aedes aegypti
Aligns to 46:159 / 173 (65.9%), covers 97.5% of PF06417, 153.3 bits

YQ13_SCHPO / O94520 ER membrane protein complex subunit 4 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
Aligns to 62:178 / 193 (60.6%), covers 96.6% of PF06417, 153.3 bits

EMC4_YEAST / P53073 ER membrane protein complex subunit 4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 4 papers)
NP_011283 chaperone EMC4 from Saccharomyces cerevisiae S288C
YGL231C Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum from Saccharomyces cerevisiae
Aligns to 60:178 / 190 (62.6%), covers 97.5% of PF06417, 145.5 bits

AT5G10780 hypothetical protein from Arabidopsis thaliana
Aligns to 51:166 / 187 (62.0%), covers 97.5% of PF06417, 136.3 bits

PF3D7_1435400 ER membrane protein complex subunit 4, putative from Plasmodium falciparum 3D7
Aligns to 62:178 / 190 (61.6%), covers 96.6% of PF06417, 113.2 bits

cgd6_1070 hypothetical protein from Cryptosporidium parvum Iowa II
Aligns to 102:219 / 229 (51.5%), covers 94.1% of PF06417, 111.2 bits

EHI_063570 uncharacterized protein from Entamoeba histolytica HM-1:IMSS
Aligns to 1:117 / 135 (86.7%), covers 95.8% of PF06417, 86.4 bits

TGME49_259000 hypothetical protein from Toxoplasma gondii ME49
Aligns to 70:218 / 229 (65.1%), covers 94.1% of PF06417, 80.9 bits

7ktxD / P53073 Cryo-em structure of saccharomyces cerevisiae er membrane protein complex bound to a fab in ddm detergent (see paper)
Aligns to 5:62 / 74 (78.4%), covers 40.7% of PF06417, 48.6 bits

Or search for genetic data about PF06417 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory