Family Search for PF06476 (DUF1090)

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PF06476 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO0572 putative exported protein from Yersinia pestis CO92
YPTB3484 putative exported protein from Yersinia pseudotuberculosis IP 32953
Aligns to 11:120 / 126 (87.3%), covers 98.2% of PF06476, 130.0 bits

• Single-Nucleotide Polymorphisms Reveal Spatial Diversity Among Clones of Yersinia pestis During Plague Outbreaks in Colorado and the Western United States
  Lowell, Vector borne and zoonotic diseases (Larchmont, N.Y.) 2015
  • “...L gat cta gaa tta ns s 519600 531578 617307 681456 888395 YPO0486_87 YPO0497_98 YPO0572 YPO0618 YPO0809 C T G A C C T G A C A A A T A Q n/a STOP S N K n/a STOP...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPO0626 Conserved hypothetical 0.619 (0.034) YPTB3468 (hdeD) YPO0590 putative membrane protein 0.209 (< 0.001) YPTB3484 YPO0572 putative exported protein 0.533 (0.013) YPTB3485 (yqjD) YPO0570 putative membrane protein 0.674 (0.02) 0.576 (0.002) YPTB3486 YPO0569A 0.606 (0.026) YPTB3510 YPO3565 putative membrane protein 0.745 (0.02) YPTB3573 (panF) YPO3657A sodium/pantothenate...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...YPTB3429 YPO0626 Conserved hypothetical 0.619 (0.034) YPTB3468 (hdeD) YPO0590 putative membrane protein 0.209 (< 0.001) YPTB3484 YPO0572 putative exported protein 0.533 (0.013) YPTB3485 (yqjD) YPO0570 putative membrane protein 0.674 (0.02) 0.576 (0.002) YPTB3486 YPO0569A 0.606 (0.026) YPTB3510 YPO3565 putative membrane protein 0.745 (0.02) YPTB3573 (panF) YPO3657A...”

PA0542 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 19:128 / 139 (79.1%), covers 98.2% of PF06476, 123.2 bits

• Transcriptome analysis of Pseudomonas aeruginosa PAO1 grown at both body and elevated temperatures
  Chan, PeerJ 2016
  • “...20.563 6.97732 1.5593 2.60418 5.00E-05 0.00069884 gene4352 tufB 29.6318 10.2742 1.52813 2.49072 5.00E-05 0.00069884 gene547 PA0542 65.1469 22.9895 1.50272 2.22129 0.0011 0.0100167 gene4138 oprG 27.1767 9.75134 1.4787 2.06861 0.0021 0.015976 gene5233 glnA 83.3418 30.4831 1.45103 2.97103 5.00E-05 0.00069884 gene3389 clpP2 23.5314 8.74695 1.42774 1.8175 0.007 0.0372301...”

YqjC / b3097 DUF1090 domain-containing protein YqjC from Escherichia coli K-12 substr. MG1655 (see paper)
ECs3979 hypothetical protein from Escherichia coli O157:H7 str. Sakai
b3097 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 6:116 / 122 (91.0%), covers 97.3% of PF06476, 122.6 bits

• Global transcriptional response of Escherichia coli O157:H7 to growth transitions in glucose minimal medium
  Bergholz, BMC microbiology 2007
  • “...ygjG 5.55 2 ECs3293 cysA -2.71 1 ECs3963 ygjL 4.06 2 ECs3302 yfeX -2.24 1 ECs3979 yqjC 2.12 2 ECs3322 - 2.10 2 ECs3980 yqjD 2.28 2 ECs3323 - 2.15 2 ECs4033 yraR 2.71 2 ECs3338 purC -5.04 1 ECs4034 yhbO 3.67 2 ECs3339 nlpB -2.13...”
• The HU regulon is composed of genes responding to anaerobiosis, acid stress, high osmolarity and SOS induction
  Oberto, PloS one 2009
  • “...0.48 1.04 1.02 1 2.21 2.24 1.26 1 1.37 1.25 0.49 a hypothetical protein yqjC b3097 yqjCDEK 1 0.71 1.08 1 1 1.37 1.72 1.22 1 1.55 1.49 0.85 a hypothetical protein yqjD b3098 yqjCDEK 1 0.69 1.05 1.02 1 1.63 2.13 1.37 1 1.49 1.4...”
• Analysis of promoter targets for Escherichia coli transcription elongation factor GreA in vivo and in vitro
  Stepanova, Journal of bacteriology 2007
  • “...of many growth phase related proteins Lipoprotein yqjCc b3097 1.7 2.8 Conserved protein yqjDc b3098 1.5 2.3 Conserved protein yhcH nanK nanE nanA c3975...”
• Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity
  Weber, Journal of bacteriology 2005
  • “...b1165 b1449 b1678 b1758 b1957 b1953 b2137 b3097 b3098 b3099 b3102 b3100 Conserved hypothetical protein Putative 4Fe-4S ferredoxin-type protein Conserved protein...”
• SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences
  Lacour, Journal of bacteriology 2004
  • “...(b4045) Hypothetical (membrane) protein (b1582) Hypothetical (periplasmic) protein (b3097) Hypothetical protein (b4217) CHM CHM CHM CHM NM CB MF (MF) CD, Lrp,...”
• Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
  Smulski, Journal of bacteriology 2001
  • “...b2959 b2960 b3010 b3011 b3021 b3022 b3024 b3029 b3068 b3097 b3098 b3099 b3160 b3190 b3203 b3263 b3292 b3293 b3399 b3400 b3401 b3446 b3448 b3472 b3494 b3515...”

Ddes_0625 protein of unknown function DUF1090 from Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Aligns to 14:124 / 136 (81.6%), covers 99.1% of PF06476, 115.9 bits

• Coordinated response of the Desulfovibrio desulfuricans 27774 transcriptome to nitrate, nitrite and nitric oxide
  Cadby, Scientific reports 2017
  • “...NapM 3.74 1.26e-10 Ddes_0616 NapA 3.25 3.24e-7 Ddes_0617 NapD 2.83 0.000187 Ddes_0619 NapH 1.98 0.0186 Ddes_0625 Unknown 3.53 3.71e-6 Ddes_0641 Alanine-glyoxylate transaminase 2.71 0.00178 Ddes_0695 Unknown 2.27 0.000168 Ddes_0786 Glycine cleavage system T protein 2.63 0.00375 Ddes_0787 Glycine cleavage system H protein 2.99 0.000285 Ddes_0789 Glycine...”

PspS49_06160 DUF1090 domain-containing protein from Pseudomonas sp. S49
Aligns to 12:122 / 126 (88.1%), covers 89.1% of PF06476, 77.8 bits

• Linking Comparative Genomics of Nine Potato-Associated Pseudomonas Isolates With Their Differing Biocontrol Potential Against Late Blight
  De, Frontiers in microbiology 2020
  • “...showed a different composition in this genomic region: three hypothetical proteins of unknown function (PspS49_06155, PspS49_06160, PspS49_06165) and a DNA binding protein (PspS49_06150) preceded the transcriptional regulator and the phage tail-like region contained a hydrolase (PspS49_06230) and a hydroxyacid dehydrogenase (PspS49_06310). Such enzymes were also reported...”

CJJ81176_1405 hypothetical protein from Campylobacter jejuni subsp. jejuni 81-176
Aligns to 4:116 / 125 (90.4%), covers 92.7% of PF06476, 75.4 bits

• High-throughput sequencing of Campylobacter jejuni insertion mutant libraries reveals mapA as a fitness factor for chicken colonization
  Johnson, Journal of bacteriology 2014
  • “...CJJ81176_1417 CJJ81176_1392 CJJ81176_1547 CJJ81176_1154 CJJ81176_1405 CJJ81176_0252 CJJ81176_1550 CJJ81176_0543 CJJ81176_0572 CJJ81176_1458 CJJ81176_0223...”

Cj1406c putative periplasmic protein from Campylobacter jejuni subsp. jejuni NCTC 11168
Aligns to 4:116 / 116 (97.4%), covers 92.7% of PF06476, 74.0 bits

• Avian Intestinal Mucus Modulates Campylobacter jejuni Gene Expression in a Host-Specific Manner
  Looft, Frontiers in microbiology 2018
  • “...Cj1665 10 Possible lipoprotein thiredoxin Cj1664 13 Possible periplasmic thiredoxin Cj1621 5 Putative periplasmic protein Cj1406c 6 Putative periplasmic protein Cj1381 7 putative lipoprotein Cj1376 15 periplasmic protein Cj1372 5 Phospholipid ABC transporter protein Cj1207c 4 Putative lipoprotein thiredoxin Cj1021c 5 Putative periplasmic protein Cj0926 6...”
• Comparison of Proteomics Profiles of Campylobacter jejuni Strain Bf under Microaerobic and Aerobic Conditions
  Rodrigues, Frontiers in microbiology 2016
  • “...1.15E-03 +1.5 19.6/4.97 97.57 16/70 (64%) 1.05E-02 1.5 39.82 5/77 (50%) tr|Q0P8K8 Putative periplasmic protein Cj1406c 4.13E-02 +2.3 24.9/5.89 17.77 8/9 (39%) tr|Q0P8M9 Peb1A major cell-binding factor Peb1A 6.10E-03 +1.5 46.86 13/14 (45%) tr|Q0PAQ4 Putative periplasmic phosphate binding protein PstS 1.58E-04 2.3 36/5.76 111.37 20/70 (58%)...”
• Phenotypic screening of a targeted mutant library reveals Campylobacter jejuni defenses against oxidative stress
  Flint, Infection and immunity 2014
  • “...cj0949c cj1036c cj1167 cj1209 cj1241 cj1255 cj1340c cj1388 cj1406c cj1623 dprA folP pstC spoT Surface structures flaG flgD flgE 2268 iai.asm.org Flagellar...”

PCL1606_20540 DUF1090 family protein from Pseudomonas chlororaphis
Aligns to 20:127 / 134 (80.6%), covers 89.1% of PF06476, 37.5 bits

• Aer Receptors Influence the Pseudomonas chlororaphis PCL1606 Lifestyle
  Arrebola, Frontiers in microbiology 2020
  • “...protein (PCL1606_20520) for upstream genes. The products of the downstream genes were hypothetical proteins for PCL1606_20540 and the HAD family of hydrolases for PCL1606_20550. The genetic background for homologous genes in other Pseudomonas strains used to generate the phylogenetic tree revealed that the products of the...”

BCAL3348a hypothetical protein from Burkholderia cenocepacia J2315
B4EET7 Exported protein from Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)
Aligns to 10:76 / 101 (66.3%), covers 48.2% of PF06476, 28.3 bits

• Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315
  Sass, BMC genomics 2015
  • “...isrK ncS24 + 90 no BCAL2965 BCAL2965a 3246937..3247026 RF01695 C4 a ncS27 - 92 yes BCAL3348a BCAL3349 Complement (3666557..3666648) RF02278 Toxic small RNA ncS62 + 57 yes BCAM1871 BCAM1872 2089713..2089769 RF02278 Toxic small RNA ncR1 + 119 no BCAL0144 BCAL0145 168973..169091 RF01057 SAH riboswitch ncR2 +...”
• Loss of O-Linked Protein Glycosylation in Burkholderia cenocepacia Impairs Biofilm Formation and Siderophore Activity and Alters Transcriptional Regulators
  Oppy, mSphere 2019
  • “...OGC pglL , and OGC mutants by the absence of glycopeptides from the glycoproteins B4EB73, B4EET7, and B4EBR7. Download FIGS1, TIF file, 1.2 MB . Copyright 2019 Oppy et al. 2019 Oppy et al. This content is distributed under the terms of the Creative Commons Attribution...”

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