Family Search for PF06496 (DUF1097)

PF06496 hits 11 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

VCA0543 conserved hypothetical protein from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 13:147 / 170 (79.4%), covers 99.3% of PF06496, 137.1 bits

• Recent Vibrio cholerae O1 Epidemic Strains Are Unable To Replicate CTXΦ Prophage Genome
  Ochi, mSphere 2021
  • “...Insertion 13 14,264 Includes genes for transposase and phage integrase Chr. 2 a 479,414 483,843 VCA0543 to VCA0545 Replacement 87 4,428 3,212 Transposase b 556,942 560,565 VCA0623 to VCA0625 Replacement 87 3,622 3,209 Transposase c 567,157 572,709 VCA0629 to VCA0638 Replacement 13 5,551 3,211 Transposase d...”

SENTW_2115 DUF1097 domain-containing protein from Salmonella enterica subsp. enterica serovar Weltevreden str.
Aligns to 8:143 / 160 (85.0%), covers 98.6% of PF06496, 130.8 bits

• Transcriptional profile of Salmonella enterica subsp. enterica serovar Weltevreden during alfalfa sprout colonization
  Brankatschk, Microbial biotechnology 2014
  • “...6.70 dATP pyrophosphohydrolase ydcF SENTW_1578 8.27 Putative esterase Hypothetical proteins SENTW_0391 32.88 Hypothetical protein ycdZ SENTW_2115 5.11 Hypothetical protein SENTW_1535 21.31 Hypothetical protein SENTW_1536 18.25 Hypothetical protein SENTW_1962 11.16 Hypothetical protein SENTW_1381 6.75 Hypothetical protein yeeI SENTW_2127 4.43 Hypothetical protein yibP SENTW_3805 4.27 Hypothetical protein yigM...”

S1103 hypothetical protein from Shigella flexneri 2a str. 2457T
Aligns to 18:153 / 173 (78.6%), covers 98.6% of PF06496, 129.8 bits

• Addendum
  , Open forum infectious diseases 2019

NupT / b1036 inner membrane protein YcdZ from Escherichia coli K-12 substr. MG1655 (see 2 papers)
ETEC_1101 DUF1097 domain-containing protein from Escherichia coli ETEC H10407
b1036 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:143 / 163 (83.4%), covers 98.6% of PF06496, 129.4 bits

• The molecular basis for control of ETEC enterotoxin expression in response to environment and host
  Haycocks, PLoS pathogens 2015
  • “...ETEC_0886/ETEC_0887 ybiS/ybiT 1128472 n.d. ( ETEC_1030 ) ( yccS ) 1205350 A GTGA TGTAGA TCACA ETEC_1101 ycgZ TG A GA TCGAGCA CACA 1263558 T T TGA CGGCTA TCAC G ETEC_1166 ptsG 1274886 TGTGA TCTGGA TCACA ETEC_1176 / ETEC_1177 ycfQ / bhsA 1301786 GA TGA TCCGCA TCACA...”
• Inactivation of efflux pumps abolishes bacterial biofilm formation
  Kvist, Applied and environmental microbiology 2008
  • “...ycdZ yojI ygaY yhaO sugE mdtI yejA mdtJ b2558 b3240 b0847 b1036 b2211 b2680 b3110 b4148 b1599 b2177 b1600 4.1 12.39 7.63 6.97 4.66 2.78 2.21 3.51 3.59 2.31 2.02...”

ECs1413 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 18:153 / 173 (78.6%), covers 98.6% of PF06496, 129.1 bits

• Biofilm formation by and multicellular behavior of Escherichia coli O55:H7, an atypical enteropathogenic strain
  Weiss-Muszkat, Applied and environmental microbiology 2010
  • “...coli O157:H7, ORF from Tn10 from Tn10 ECs0265 ECs1413 ECs0267 nt position 647-665b 1255-1272b 1535-1553b 923-905b 351-374c 160-141b 344-364c 332-352b 1-20d E....”
  • “...intergenic region between ORF ECs1414 and ORF ECs1413 GenBank/EMBL accession no. J01749 GenBank/EMBL accession no. J01749 1459990-1459928c 89-105d 751-770d a...”

VIBHAR_05920 hypothetical protein from Vibrio harveyi ATCC BAA-1116
Aligns to 55:189 / 206 (65.5%), covers 98.6% of PF06496, 127.8 bits

• Hierarchical Transcriptional Control of the LuxR Quorum-Sensing Regulon of Vibrio harveyi
  Chaparian, Journal of bacteriology 2020 (secret)

SO3047 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 8:142 / 163 (82.8%), covers 99.3% of PF06496, 126.4 bits

• Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH
  Leaphart, Journal of bacteriology 2006
  • “...a number of poorly characterized proteins (e.g., so1053, so3047, so3719, so3720, so3900, so4126, so4355, so4362, and so4621) constituted part of a general...”

PMI3124 hypothetical protein from Proteus mirabilis HI4320
Aligns to 8:143 / 154 (88.3%), covers 98.6% of PF06496, 118.5 bits

• Molecular characteristics of Salmonella genomic island 1 in Proteus mirabilis isolates from poultry farms in China
  Lei, Antimicrobial agents and chemotherapy 2014
  • “...trmE gene and the gene encoding a membrane protein PMI3124 due to the loss of the hipBA module that appeared to occur by homologous recombination between 49-bp...”

YahC / b0317 uncharacterized protein YahC from Escherichia coli K-12 substr. MG1655
b0317 predicted inner membrane protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 8:153 / 165 (88.5%), covers 98.6% of PF06496, 94.7 bits

• Definition of the Escherichia coli MC4100 genome by use of a DNA array
  Peters, Journal of bacteriology 2003
  • “...ykgH, b0279, b0280, b0295, b0298, b030, b0303, b0309, b0317, b0319, b0320, b0321, b0322, b0326, b0327, b0329, b0332, b0334, b0335, b0347, b1137,a b1138, b1141,...”

CD3636 hypothetical protein from Clostridium difficile 630
Aligns to 12:159 / 170 (87.1%), covers 97.9% of PF06496, 87.8 bits

• Genome-wide analysis of cell type-specific gene transcription during spore formation in Clostridium difficile
  Saujet, PLoS genetics 2013
  • “...protein 0.27 CD1940 Putative membrane protein 0.08 E CD2800 Putative membrane protein 0.11 2.6 E CD3636 Putative membrane protein 0.42 CD3636-CD3635 CD3635 Conserved hypothetical protein 0.29 metabolism CD3638 Conserved hypothetical protein 0.21 E CD3638-CD3637 CD3637 NADPH-dependent FMN reductase 0.27 CD2429.1 4Fe-4S ferredoxin 0.27 E CD2429.1-CD2428 CD2429...”

CAETHG_1030 DUF1097 domain-containing protein from Clostridium autoethanogenum DSM 10061
Aligns to 12:115 / 126 (82.5%), covers 63.4% of PF06496, 44.8 bits

• Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium
  Humphreys, BMC genomics 2015
  • “...249/249 NF 293/293 985484 C CAETHG_0915 4 4 688 688 NF NF 688/688 1106176 A CAETHG_1030 6 6 172 126 109/109 NF 172/172 1457002 C CAETHG_1363 6 6 296 254 249/249 294/295 292/296 1603900 T CAETHG_1501 8 8 401 401 NF NF 401/401 1620246 T CAETHG_1521...”

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