PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06526 (DUF1107)

PF06526.12 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM4406.S putative cytoplasmic protein (NCBI) from Salmonella typhimurium LT2
STM14_5292 DUF1107 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 1:63 / 68 (92.6%), covers 100.0% of PF06526, 104.6 bits

YtfK / b4217 stringent response modulator YtfK from Escherichia coli K-12 substr. MG1655 (see 3 papers)
b4217 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
NP_313222 hypothetical protein from Escherichia coli O157:H7 str. Sakai
ECK4213, NP_418638 DUF1107 domain-containing protein YtfK from Escherichia coli str. K-12 substr. MG1655
Aligns to 1:63 / 68 (92.6%), covers 100.0% of PF06526, 102.1 bits

ETAE_0374 hypothetical protein (RefSeq) from Edwardsiella tarda EIB202
Aligns to 1:63 / 68 (92.6%), covers 100.0% of PF06526, 102.0 bits

c5315 Hypothetical protein ytfK (NCBI ptt file) from Escherichia coli CFT073
Aligns to 23:85 / 90 (70.0%), covers 100.0% of PF06526, 101.2 bits

YPO3527 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
YPTB0449 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 1:63 / 70 (90.0%), covers 100.0% of PF06526, 100.8 bits

VP2585 conserved hypothetical protein (NCBI ptt file) from Vibrio parahaemolyticus RIMD 2210633
Aligns to 1:63 / 68 (92.6%), covers 100.0% of PF06526, 100.1 bits

M892_13365 DUF1107 domain-containing protein from Vibrio campbellii ATCC BAA-1116
Aligns to 1:63 / 68 (92.6%), covers 100.0% of PF06526, 99.7 bits

VC2473 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 10:72 / 77 (81.8%), covers 100.0% of PF06526, 98.3 bits

Or search for genetic data about PF06526 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory