Family Search for PF06545 (DUF1116)

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PF06545 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

UC7_RS15515 DUF1116 domain-containing protein from Enterococcus caccae ATCC BAA-1240
Aligns to 88:304 / 422 (51.4%), covers 100.0% of PF06545, 329.5 bits

• Analysis of Temporal Changes in Growth and Gene Expression for Commensal Gut Microbes in Response to the Polyphenol Naringenin
  Firrman, Microbiology insights 2018
  • “...protein 1.6 Unknown UC7_RS15235 Hypothetical protein 1.6 Unknown UC7_RS13770 CAAX amino protease 1.5 Protein synthesis UC7_RS15515 Hypothetical protein 1.5 Unknown UC7_RS14435 Hypothetical protein 1.5 Unknown UC7_RS12990 6-phosphofructokinase 1.5 Glycolysis UC7_RS15570 PTS IIC component 1.5 Sugar transport UC7_RS12210 DNA-directed RNA polymerase subunit delta 1.5 Transcription UC7_RS13285 PTS...”

c4765 Hypothetical protein yahG from Escherichia coli CFT073
Aligns to 157:371 / 491 (43.8%), covers 100.0% of PF06545, 329.4 bits

• Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli
  Lloyd, Journal of bacteriology 2007
  • “...c4735 c4757 c4758 c4759 c4760 c4761 c4762 c4763 c4764 c4765 c4766 c4767 c4768 c4774 c4775 c4776 c4777 c4778 c4924 c4925 c4981 c4982 c4983 c4984 c4986 c4987...”

STM0530 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 87:302 / 419 (51.6%), covers 100.0% of PF06545, 329.2 bits

• Salmonella serovar identification using PCR-based detection of gene presence and absence
  Arrach, Journal of clinical microbiology 2008
  • “...STM0428, STM0429, STM0431, STM0511, STM0519, STM0526, STM0530, STM0531, STM0550, STM0557, STM0558, STM0572, STM0574, STM0611, STM0652, STM0656, STM0659,...”

YlbE DUF1116 domain-containing protein YlbE from Escherichia coli K-12 substr. MG1655 (see 2 papers)
Aligns to 87:302 / 419 (51.6%), covers 100.0% of PF06545, 327.9 bits

APECO1_2635 hypothetical protein from Escherichia coli APEC O1
Aligns to 157:371 / 491 (43.8%), covers 100.0% of PF06545, 327.2 bits

• tkt1, located on a novel pathogenicity island, is prevalent in avian and human extraintestinal pathogenic Escherichia coli
  Li, BMC microbiology 2012
  • “...4322434..4323390 catalyzes the reversible synthesis of carbamate NC_008563 and ATP from carbamoyl phosphate and ADP APECO1_2635 yahG 4323383..4324858 hypothetical protein NC_008563 APECO1_2634 yahF 4324804..4326363 hypothetical protein NC_008563 APECO1_2633 yahE 4326458..4327318 hypothetical protein NC_008563 APECO1_2632 4327324..4327992 putative isochorismatase hydrolase NC_008563 Acknowledgements This work was supported by USDA...”

U12A_RS05235 DUF1116 domain-containing protein from Escherichia coli
Aligns to 87:302 / 419 (51.6%), covers 100.0% of PF06545, 326.3 bits

• Horizontally acquired papGII-containing pathogenicity islands underlie the emergence of invasive uropathogenic Escherichia coli lineages
  Biggel, Nature communications 2020
  • “...(minimum sequence coverage/identity 100/99%), and the clade C1-specific allele of a gene with locus tag U12A_RS05235 identified in isolate U12A (exact matches). Screening for virulence-associated genes An E. coli virulence-associated gene database (EcVGDB 99 ) was compiled from two separate collections of E. coli virulence factors,...”

EF0383 protein FdrA/conserved hypothetical protein from Enterococcus faecalis V583
Aligns to 669:884 / 1003 (21.5%), covers 100.0% of PF06545, 307.5 bits

• Transcriptome analysis of Enterococcus faecalis during mammalian infection shows cells undergo adaptation and exist in a stringent response state
  Frank, PloS one 2014
  • “...protein EF2355 chaperone protein ClpB EF2987 integrating conjugative element protein 8 h microarray UP+RIVET sense EF0383 hypothetical protein 2 h microarray DOWN +8 hmicroarray DOWN+RIVET antisense EF1360 dihydroxyacetone kinase EF1614 DNA topoisomerase subunit A EF2623 P-ATPase superfamily P-type ATPase cadmium transporter 2 h microarray DOWN+RIVET antisense...”

YahG / b0321 DUF1116 domain-containing protein YahG from Escherichia coli K-12 substr. MG1655
WP_000083429 DUF1116 domain-containing protein from Escherichia coli
b0321 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 143:357 / 472 (45.6%), covers 100.0% of PF06545, 296.1 bits

• Fitness cost of a mcr-1-carrying IncHI2 plasmid
  Ma, PloS one 2018
  • “...CT (-) mprA transcriptional regulator WP_000378442 M9 CT (A86 * ) orf DUF1116 domain-containing protein WP_000083429 unknown 1 aa sub, amino acid substitution; -, synonymous mutation * introducing a stop codon. 2 Function is only shown for proteins with non-synonymous mutations. Function assignation is from Interpro...”
• The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse
  Durfee, Journal of bacteriology 2008
  • “...lacX74 Deletion Wild type and missense Deletion (b0321) b0322-b0352 DH10Bdup Duplication b0553-b0655 galK16 IS2 disruption b0757 galE15 deoR e14 Missense Wild...”
• Definition of the Escherichia coli MC4100 genome by use of a DNA array
  Peters, Journal of bacteriology 2003
  • “...b0295, b0298, b030, b0303, b0309, b0317, b0319, b0320, b0321, b0322, b0326, b0327, b0329, b0332, b0334, b0335, b0347, b1137,a b1138, b1141, b1142, b1143, b1144,...”

Or search for genetic data about PF06545 in the Fitness Browser