Family Search for PF06551 (DUF1120)
PF06551 hits 14 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
YhcF / b3219 DUF1120 domain-containing protein YhcF from Escherichia coli K-12 substr. MG1655 (see 5 papers)
b3219 predicted transcriptional regulator from Escherichia coli str. K-12 substr. MG1655
P45422 Uncharacterized protein YhcF from Escherichia coli (strain K12)
Aligns to 27:138 / 238 (47.1%), covers 100.0% of PF06551, 161.1 bits
- DNA damage differentially activates regional chromosomal loci for Tn7 transposition in Escherichia coli
Shi, Genetics 2008 - “...hotspot (Figures 3A and 4B). When we induced DSBs in b3219 (b3219-6TTn10), a position 19 kb from the yrbL-mtgA hotspot, there seemed to be a drop in the usage...”
- “...Figure 1. The three relevant loci, yhfT, smg, and b3219, are indicated (and the position shown in kilobases). The position where the DSB was induced is...”
- Genome-wide localization of mobile elements: experimental, statistical and biological considerations
Martinez-Vaz, BMC genomics 2005 - “...ccmH 10. glcD, glcC, b2981, yi52_9 , b2983, b2984, b2986 11. yhcD, yhcE, yi52_10 , b3219, yhcG 12. arsB, yhiS, yi52_11 , slp, yhiF, yhiD Table 3 The 100 genes predicted as neighbours of IS5 elements in the genome of MG1655 isolate 'B'. Refer to the...”
- “...9. yejO, b2191, yi52_8, ccmH 10. glcC, b2981, yi52_9, b2983, pitB 11. yhcD, yhcE, yi52_10, b3219, b3221, sspB, b3238 12. yhiS, yi52_11 , yhiF, tnaA We confirmed the presence of an IS5 element in the flhDC / yecG intergenic region by PCR. A 2720 bp PCR...”
- Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays
Winterberg, Applied and environmental microbiology 2005 - “...Global studya b1238 b1269 b1359 b1463 b1471 b1765 b1874 b1961 b2163 b3134 b3219 b3863 tdk yciL ydaU nhoA yddk ydjA cutC dcm yeiL agaW yhcF polA A A A A A A A A...”
- Sequence analysis of Tn10 insertion sites in a collection of Escherichia coli strains used for genetic mapping and strain construction
Nichols, Journal of bacteriology 1998 - “...cysI fucP recD speA nupG metC tolC air nlp b3219 acrF smg yhfT glgP ig, ugpB-livF ig, glts-yicE nlpA ig, yidW-yidX AE000111 AE000113 AE000118 AE000123 AE000129...”
- Optimized Signal Peptide for Secretory Expression of Human Recombinant Somatropin in E. coli
Ahmadi, Advanced pharmaceutical bulletin 2023 - “...Escherichia coli (strain K12) P28696 MKSVFTISASLAISLMLCCTAQA Uncharacterized protein YhcF yhcF 20 Escherichia coli (strain K12) P45422 MNNVKLLIAGSAFFAMSAQA Uncharacterized fimbrial-like protein YfcQ yfcQ 18 Escherichia coli (strain K12) P76500 MRKTFLTLLCVSSAIAHA Iron uptake system component EfeO EfeO 26 Escherichia coli (strain K12) P0AB24 MTINFRRNALQLSVAALFSSAFMANA Glutamine-binding periplasmic protein glnH...”
STM4574 putative outer membrane protein from Salmonella typhimurium LT2
SNSL254_RS24285 DUF1120 domain-containing protein from Salmonella enterica subsp. enterica serovar Newport str. SL254
Aligns to 27:135 / 229 (47.6%), covers 100.0% of PF06551, 159.6 bits
- Molecular Characteristics of Salmonella Spp. Responsible for Bloodstream Infections in a Tertiary Hospital in Nanjing, China, 2019-2021
Hua, Infection and drug resistance 2024 - “...steC, sthA, sthB, sthC, sthD, sthE SEAG_RS23305, SEAG_RS23320, SEAG_RS23325, SNSL254_RS24270, SNSL254_RS24285, SNSL254_RS24290, STM3026, STM4261, STM4571, STM4574, STM4575, bcfA, bcfB, bcfC, bcfD, bcfE, bcfF, bcfG, bcfH, clpE, ehaB, faeD, htpB, lpfA, lpfB, lpfC, lpfD, lpfE, nmpC, pefA, pefB, pefC, pefD, pegA, pegB, pegC, pegD, safA, safB, safC,...”
- Identification of novel factors involved in modulating motility of Salmonella enterica serotype typhimurium
Bogomolnaya, PloS one 2014 - “...STM1632, STM1856, STM1926, STM1958, STM2303, STM2508, ygaU, STM3125, lpfE , STM3944, STM4030.S, STM4197, STM4204, STM4529, STM4574, STM4599, invR *Based on COGs (Clusters of Orthologous Groups of protein). **Mutants with previously known motility phenotype are shown in bold. ***Mutants in fimbrial genes are underlined. In addition, we...”
- Salmonella serovar identification using PCR-based detection of gene presence and absence
Arrach, Journal of clinical microbiology 2008 - “...STM4493, STM4499, STM4524, STM4527, STM4537, STM4573, STM4574, STM4589, STM4590, PSLT006, PSLT031, PSLT104, STY0314, STY0324, STY1016, STY1601, STY1630,...”
- Molecular Characteristics of Salmonella Spp. Responsible for Bloodstream Infections in a Tertiary Hospital in Nanjing, China, 2019-2021
Hua, Infection and drug resistance 2024 - “...ratB, stbA, stbB, stbC, stbD, steC, sthA, sthB, sthC, sthD, sthE SEAG_RS23305, SEAG_RS23320, SEAG_RS23325, SNSL254_RS24270, SNSL254_RS24285, SNSL254_RS24290, STM3026, STM4261, STM4571, STM4574, STM4575, bcfA, bcfB, bcfC, bcfD, bcfE, bcfF, bcfG, bcfH, clpE, ehaB, faeD, htpB, lpfA, lpfB, lpfC, lpfD, lpfE, nmpC, pefA, pefB, pefC, pefD, pegA, pegB,...”
SEAG_RS23320 DUF1120 domain-containing protein from Salmonella enterica subsp. enterica serovar Agona str. SL483
Aligns to 27:135 / 229 (47.6%), covers 100.0% of PF06551, 156.7 bits
- Molecular Characteristics of Salmonella Spp. Responsible for Bloodstream Infections in a Tertiary Hospital in Nanjing, China, 2019-2021
Hua, Infection and drug resistance 2024 - “...fimZ, hcpA, misL, ratB, stbA, stbB, stbC, stbD, steC, sthA, sthB, sthC, sthD, sthE SEAG_RS23305, SEAG_RS23320, SEAG_RS23325, SNSL254_RS24270, SNSL254_RS24285, SNSL254_RS24290, STM3026, STM4261, STM4571, STM4574, STM4575, bcfA, bcfB, bcfC, bcfD, bcfE, bcfF, bcfG, bcfH, clpE, ehaB, faeD, htpB, lpfA, lpfB, lpfC, lpfD, lpfE, nmpC, pefA, pefB, pefC,...”
OssB / b3214 periplasmic protein GltF from Escherichia coli K-12 substr. MG1655 (see 8 papers)
GLTF_ECOLI / P28721 Protein GltF from Escherichia coli (strain K12) (see paper)
b3214 periplasmic protein from Escherichia coli str. K-12 substr. MG1655
NP_417681 periplasmic protein GltF from Escherichia coli str. K-12 substr. MG1655
Aligns to 33:146 / 254 (44.9%), covers 100.0% of PF06551, 155.3 bits
SNSL254_RS24290 DUF1120 domain-containing protein from Salmonella enterica subsp. enterica serovar Newport str. SL254
STM4575 putative outer membrane protein from Salmonella typhimurium LT2
Aligns to 27:132 / 229 (46.3%), covers 100.0% of PF06551, 153.1 bits
- Molecular Characteristics of Salmonella Spp. Responsible for Bloodstream Infections in a Tertiary Hospital in Nanjing, China, 2019-2021
Hua, Infection and drug resistance 2024 - “...stbA, stbB, stbC, stbD, steC, sthA, sthB, sthC, sthD, sthE SEAG_RS23305, SEAG_RS23320, SEAG_RS23325, SNSL254_RS24270, SNSL254_RS24285, SNSL254_RS24290, STM3026, STM4261, STM4571, STM4574, STM4575, bcfA, bcfB, bcfC, bcfD, bcfE, bcfF, bcfG, bcfH, clpE, ehaB, faeD, htpB, lpfA, lpfB, lpfC, lpfD, lpfE, nmpC, pefA, pefB, pefC, pefD, pegA, pegB, pegC,...”
- Molecular Characteristics of Salmonella Spp. Responsible for Bloodstream Infections in a Tertiary Hospital in Nanjing, China, 2019-2021
Hua, Infection and drug resistance 2024 - “...sthA, sthB, sthC, sthD, sthE SEAG_RS23305, SEAG_RS23320, SEAG_RS23325, SNSL254_RS24270, SNSL254_RS24285, SNSL254_RS24290, STM3026, STM4261, STM4571, STM4574, STM4575, bcfA, bcfB, bcfC, bcfD, bcfE, bcfF, bcfG, bcfH, clpE, ehaB, faeD, htpB, lpfA, lpfB, lpfC, lpfD, lpfE, nmpC, pefA, pefB, pefC, pefD, pegA, pegB, pegC, pegD, safA, safB, safC, safD,...”
- Emergence and Dissemination of mcr-Carrying Clinically Relevant Salmonella Typhimurium Monophasic Clone ST34
Biswas, Microorganisms 2019 - “...stdC, stdD, stdA, stdB, sthA, sthB, sthC, sthE, stiA, stiB, stiC, stiH, stjA, stjB, stjC, STM4575, fimI, fimD, fimH, fimW, fimY, fimZ, flgJ, flgB, flgC, flgF, flgG, cheA, cheB, cheR, cheW, cheZ, flgA, flgH, flgI, flgL, flgN, flhC, flhD, flhE, fliA, fliB, fliC, fliD, fliE, fliG,...”
- The genome of Salmonella enterica serovar gallinarum: distinct insertions/deletions and rare rearrangements
Wu, Journal of bacteriology 2005 - “...to STM4498, STM4520 to STM-4527, and STM4571 to STM4575 (purA-serB), not inclusive, in serovar Gallinarum. Of these areas, STM3022 to STM3034 contains genes...”
- “...fimbriae, STM4417 to STM4436 contains srfJ genes, STM4571 to STM4575 encodes stj fimbriae, and genes in STM4520 to STM4527 code for a type I restriction system...”
SEAG_RS23325 DUF1120 domain-containing protein from Salmonella enterica subsp. enterica serovar Agona str. SL483
Aligns to 27:132 / 229 (46.3%), covers 100.0% of PF06551, 139.2 bits
- Molecular Characteristics of Salmonella Spp. Responsible for Bloodstream Infections in a Tertiary Hospital in Nanjing, China, 2019-2021
Hua, Infection and drug resistance 2024 - “...hcpA, misL, ratB, stbA, stbB, stbC, stbD, steC, sthA, sthB, sthC, sthD, sthE SEAG_RS23305, SEAG_RS23320, SEAG_RS23325, SNSL254_RS24270, SNSL254_RS24285, SNSL254_RS24290, STM3026, STM4261, STM4571, STM4574, STM4575, bcfA, bcfB, bcfC, bcfD, bcfE, bcfF, bcfG, bcfH, clpE, ehaB, faeD, htpB, lpfA, lpfB, lpfC, lpfD, lpfE, nmpC, pefA, pefB, pefC, pefD,...”
ESA_03517 DUF1120 domain-containing protein from Cronobacter sakazakii ATCC BAA-894
Aligns to 27:132 / 227 (46.7%), covers 100.0% of PF06551, 98.7 bits
ESA_03521 DUF1120 domain-containing protein from Cronobacter sakazakii ATCC BAA-894
Aligns to 25:128 / 225 (46.2%), covers 100.0% of PF06551, 74.6 bits
BCAL1826 hypothetical protein from Burkholderia cenocepacia J2315
Aligns to 28:129 / 221 (46.2%), covers 100.0% of PF06551, 65.5 bits
ESA_03512 DUF1120 domain-containing protein from Cronobacter sakazakii ATCC BAA-894
Aligns to 26:110 / 216 (39.4%), covers 62.1% of PF06551, 54.9 bits
ESA_03513 DUF1120 domain-containing protein from Cronobacter sakazakii ATCC BAA-894
Aligns to 26:110 / 216 (39.4%), covers 62.1% of PF06551, 53.7 bits
y0561 hypothetical from Yersinia pestis KIM
Aligns to 30:106 / 212 (36.3%), covers 58.6% of PF06551, 31.8 bits
- Contributions of chaperone/usher systems to cell binding, biofilm formation and Yersinia pestis virulence
Felek, Microbiology (Reading, England) 2011 - “...in HEp-2, THP-1 or RAW264.7 cell binding (Fig. 5 ), including a deletion of locus y0561 , which was shown to encode an adhesin in E. coli (Fig. 4 ). For these studies, bacterial cells were grown under three different conditions to mimic different natural environments:...”
- “...Psa ( Lindler & Tall, 1993 )]. This indicates that other adhesins in addition to y0561 mediate Y. pestis adhesion in KIM5. Alternatively, locus y0561-0563 may not be expressed under the conditions tested. The Psa mutant ( psaA ) had an adhesion defect to all three...”
- Three Yersinia pestis adhesins facilitate Yop delivery to eukaryotic cells and contribute to plague virulence
Felek, Infection and immunity 2010 - “...ail psaA ail pla psaA ail pla psaA yapC y0561 pCD1 23 22 2 This This This This This This 23 Plasmids pMMB207 pMMB207-ail pMMB207-pla pMMB207-psaABC pMMB207-yapC...”
- “...and the pilus associated with the chaperone usher locus y0561 to y0563 (24). Neither locus is well expressed under laboratory conditions (23, 24; S. Felek and...”
PMI1929 fimbrial subunit from Proteus mirabilis HI4320
Aligns to 27:149 / 228 (53.9%), covers 79.3% of PF06551, 27.2 bits
- Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility
Pearson, Journal of bacteriology 2008 - “...other genes (PMI1033, PMI1627, PMI1812, PMI1920, PMI1922, PMI1924, PMI1929, PMI2154, and PMI3023) are isolated from other fimbrial genes but could act in trans...”
PMI1922 fimbrial subunit from Proteus mirabilis HI4320
Aligns to 27:127 / 231 (43.7%), covers 72.4% of PF06551, 22.9 bits
- Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility
Pearson, Journal of bacteriology 2008 - “...operon. The other genes (PMI1033, PMI1627, PMI1812, PMI1920, PMI1922, PMI1924, PMI1929, PMI2154, and PMI3023) are isolated from other fimbrial genes but could...”
Or search for genetic data about PF06551 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory