Family Search for PF06572 (DUF1131)

April 2024: GapMind for amino acid biosynthesis has been updated to include newly-discovered enzymes and comparative genomics predictions (see details)

PF06572 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPTB2744 putative lipoprotein from Yersinia pseudotuberculosis IP 32953
YPO3026 putative lipoprotein from Yersinia pestis CO92
Aligns to 29:200 / 203 (84.7%), covers 99.4% of PF06572, 287.8 bits

• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...conserved hypothetical protein 4.448 (< 0.001) 1.458 (0.016) YPTB2704 YPO2981 putative exported protein 1.628 (0.015) YPTB2744 (yfeY) YPO3026 putative lipoprotein 1.604 (0.019) YPTB2753 YPO3031 putative acetyltransferase 1.391 (0.02) YPTB2750 or3477 hypothetical 0.688 (0.006) YPTB2787 YPO3066 hypothetical protein 1.504 (0.019) YPTB2822 YPO2857 putative exported protein 1.718 (0.031)...”
• Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
  Rosso, BMC microbiology 2008
  • “...protein 4.448 (< 0.001) 1.458 (0.016) YPTB2704 YPO2981 putative exported protein 1.628 (0.015) YPTB2744 (yfeY) YPO3026 putative lipoprotein 1.604 (0.019) YPTB2753 YPO3031 putative acetyltransferase 1.391 (0.02) YPTB2750 or3477 hypothetical 0.688 (0.006) YPTB2787 YPO3066 hypothetical protein 1.504 (0.019) YPTB2822 YPO2857 putative exported protein 1.718 (0.031) YPTB2877 YPO2918...”

SF2485 orf, conserved hypothetical protein from Shigella flexneri 2a str. 301
Aligns to 23:191 / 191 (88.5%), covers 99.4% of PF06572, 282.8 bits

• High yield production process for Shigella outer membrane particles
  Berlanda, PloS one 2012
  • “...flexneri 2a str. 301] ybaY gi|24111837 22 1 RpoE-regulated lipoprotein [S. flexneri 2a str. 301] SF2485 gi|24113773 23 1 hypothetical protein SSON_2966 [S. sonnei Ss046] SSON_2966 gi|74313380 24 1 lipoprotein [S. flexneri 2a str. 2457T] nlpB gi|30063856 25 2 entry exclusion protein 2 [S. sonnei Ss046]...”

YfeY / b2432 DUF1131 domain-containing lipoprotein YfeY from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P76537 Uncharacterized protein YfeY from Escherichia coli (strain K12)
b2432 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 23:191 / 191 (88.5%), covers 99.4% of PF06572, 282.8 bits

• Complete genome reveals genetic repertoire and potential metabolic strategies involved in lignin degradation by environmental ligninolytic Klebsiella variicola P1CD1
  Dos, PloS one 2020
  • “...IS43 (UniProt Id: A0A0H3GTD5) and 75% with the XfeY of Escherichia coli K12 (UniProt Id; P76537). We found the gene YfeY closely related to the YfeX gene in the K . variicola P1CD1 genome in RAST annotation. YefY is between 1460382146057 and YfeX 14610521461951 ( S1...”
• Genome-wide analysis of lipoprotein expression in Escherichia coli MG1655
  Brokx, Journal of bacteriology 2004
  • “...b1793 b1806 b1847 b1904 b1928 b2175 b2176 b2214 b2346 b2432 b2477 b2512 b2593 b2595 b2605 b2701 b2742 b2809 b2813 b2833 b2865 b2963 b3150 b3163 b3267 b3369...”
• DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli
  DeLisa, Journal of bacteriology 2001
  • “...4.3 b2432 ................................................................................... 4.2 b2875...”

KPHS_38450 RpoE-regulated lipoprotein from Klebsiella pneumoniae subsp. pneumoniae HS11286
Aligns to 23:191 / 191 (88.5%), covers 99.4% of PF06572, 282.1 bits

• Unsupervised Machine Learning Organization of the Functional Dark Proteome of Gram-Negative "Superbugs": Six Protein Clusters Amenable for Distinct Scientific Applications
  Sicilia, ACS omega 2022
  • “...0 0.749 0.949 84.85 DUF493 rich medium 1 KPHS_00170 0.00129 0.693 1.000 100.00 DUF1040 1 KPHS_38450 0.00150 0.697 0.996 85.86 DUF1131 1 KPHS_48910 0.00019 0.467 0.993 94.44 lung infection 1 PA1076 0.00232 0.619 0.998 100.00 DUF5064 1 PA1233 0.00536 0.683 0.985 78.82 DUF2790 1 PA3931 0.00125...”

Z3697 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 23:191 / 191 (88.5%), covers 99.4% of PF06572, 281.3 bits

• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...ybhC 45979 L-OM OM 1830 91 LTAC 22 S 2 predicted outer membrane lipoprotein YfeY Z3697 (yfeY) 20814 L (IM or OM) unkn 1775 0 LTGC 18 S 3 unknown protein encoded by prophage CP-933K Z0955 - 34904 L (hydr LS) unkn 1564 0 FTTC 18...”

SL1344_RS12565, STM14_3005 RpoE-regulated lipoprotein from Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
STM2447 putative outer membrane lipoprotein from Salmonella typhimurium LT2
Aligns to 23:191 / 191 (88.5%), covers 99.4% of PF06572, 271.2 bits

• Effects of colonization-associated gene yqiC on global transcriptome, cellular respiration, and oxidative stress in Salmonella Typhimurium
  Fan, Journal of biomedical science 2022
  • “..., fimF , fimZ , and fimW ), RNA polymerase sigma factor ( rpoS ), SL1344_RS12565 ( rpoE -regulated lipoprotein), cytochromes (SL1344_RS06220 and aapB ), spermidine/putrescine transporter substrate-binding protein ( potF ), ironsulfur assembly ( yfhP , yfhF , fdx , nifU , and yhgI ),...”
• Cappable-Seq Reveals Specific Patterns of Metabolism and Virulence for Salmonella Typhimurium Intracellular Survival within Acanthamoeba castellanii
  Balkin, International journal of molecular sciences 2021
  • “...the alkyl hydroperoxide reductase ( ahpCF ), and the putative iron-dependent peroxidases ( STM14_3004 and STM14_3005 ) was upregulated within Acanthamoeba ( Table 1 ). In contrast, expression of the superoxide dismutases genes sodB and sodC and the oxidoreductase gene STM14_2022 was downregulated. Furthermore, the peroxidase...”
• Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes
  Andrews-Polymenis, Journal of bacteriology 2004
  • “...STM55 STM174 STM3794 STM6199 STM10666 STM2081 STM2120 STM6335 STM760 STM2447 STM16603 STM8663 STM515 1990 1994 1996 1996 1997 1997 1997 1997 1998 1998 1997 1999...”

STY2684 putative lipoprotein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
Aligns to 23:191 / 191 (88.5%), covers 99.4% of PF06572, 271.2 bits

• In silico prediction of human pathogenicity in the γ-proteobacteria
  Andreatta, PloS one 2010
  • “...to the pathogenicity family 6758 by the protein families method. The predicted functional partners are: STY2684 (putative lipoprotein); holD (DNA polymerase III subunit psi); STY1183 (hypothetical protein); srfC (putative virulence effector protein); STY1949 (putative lipoprotein); lppA (major outer membrane protein); lppB (major outer membrane protein); STY0374...”

Or search for genetic data about PF06572 in the Fitness Browser