Family Search for PF06634 (DUF1156)

PF06634 hits 31 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

M.Bbr10543I Type II methyltransferase recognizing RCCCCYG with methylation at 5(Nm4C) from Bordetella bronchiseptica NCTC10543
Aligns to 14:89 / 965 (7.9%), covers 100.0% of PF06634, 112.1 bits

M.CoxT2IV Type II methyltransferase recognizing CCCCGC with methylation at 4(Nm4C) from Cupriavidus oxalaticus T2
Aligns to 13:86 / 951 (7.8%), covers 100.0% of PF06634, 108.4 bits

M.RpaV Type II methyltransferase recognizing GCCCGCC with methylation at 4(Nm4C) from Rhodopseudomonas palustris CGA009
Aligns to 15:86 / 944 (7.6%), covers 100.0% of PF06634, 108.0 bits

M.Kpn9159II Type II methyltransferase recognizing AACCGT with methylation at 4(Nm4C) from Klebsiella pneumoniae NCTC9159
Aligns to 14:89 / 970 (7.8%), covers 100.0% of PF06634, 106.6 bits

M.Cma10206VI Type II methyltransferase recognizing TGGAGG with methylation at 4(m6A) from Corynebacterium matruchotii NCTC10206
Aligns to 12:83 / 929 (7.8%), covers 97.3% of PF06634, 105.0 bits

M.Cma14266III Type II methyltransferase recognizing TGGAGG with methylation at 4(m6A) from Corynebacterium matruchotii ATCC 14266
Aligns to 12:83 / 929 (7.8%), covers 97.3% of PF06634, 102.9 bits

M.Lqu12376II Type II methyltransferase recognizing GGACTK with methylation at 4(Nm4C) from Legionella quateirensis NCTC12376
Aligns to 14:87 / 951 (7.8%), covers 100.0% of PF06634, 98.3 bits

M.Tam77409IV Type II methyltransferase recognizing CCRCTC with methylation at 4(Nm4C) from Thermus amyloliquefaciens YIM 77409
Aligns to 8:75 / 942 (7.2%), covers 98.6% of PF06634, 96.8 bits

M.Cfa24236III Type II methyltransferase recognizing TACCGT with methylation at 4(Nm4C) from Citrobacter farmeri CCRI-24236
Aligns to 14:90 / 970 (7.9%), covers 100.0% of PF06634, 88.7 bits

CCALI_00449 DUF1156 domain-containing protein from Chthonomonas calidirosea T49
Aligns to 2:66 / 987 (6.6%), covers 69.9% of PF06634, 82.4 bits

• The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone
  Lee, Applied and environmental microbiology 2016
  • “...a previous study identified two putative horizontally transferred regions, A (between the loci CCALI_00447 and CCALI_00449) and B (between the loci CCALI_00804 and CCALI_00807) ( 8 ) (see Fig. S10 in the supplemental material). These two regions were conserved between isolates T49 T and TKA4.10 but...”
  • “...and TKA4.10, more divergence in P488 (e.g., deletions, truncations, and frameshift mutations in the loci CCALI_00449 and CCALI_00805), and the regions were either never acquired or deleted from WRG1.2. Finally, we compared our Bayesian-inferred strain phylogeny to the structure of the microbial community from each sample...”
• Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes
  Lee, The ISME journal 2014
  • “...subunit (CCALI_00805) and an adenine-specific DNA methylase (CCALI_00449), which were both most similar to homologues to the firmicute Candidatus `Desulforudis...”

RB454 probable predicted DNA methylase containing a Zn-ribbon from Pirellula sp. 1
Aligns to 21:84 / 1003 (6.4%), covers 97.3% of PF06634, 70.2 bits

• Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes
  Gade, Microbial ecology 2004 (PubMed)
  • “...for the genus Pirellula and a species-specific probe (RB454) for Pirellula sp. strain SH1 have been designed and optimized. Together with the already existing...”
  • “...1.8 1.4 1.2 1.9 2 2 3 2 0.2 0.2 0.8 1 8 4 2 2 2 2 0.7 PIR1223 RB454 ND + + + + + ) ) ) + + + ND + ND + ) ) ) ND ) ) + ) ) ND ND ND ND ND ND ND ND ND ND...”

Nham_1353 putative predicted DNA methylase containing a Zn-ribbon from Nitrobacter hamburgensis X14
Aligns to 25:87 / 995 (6.3%), covers 69.9% of PF06634, 69.9 bits

• A mimicking-of-DNA-methylation-patterns pipeline for overcoming the restriction barrier of bacteria
  Zhang, PLoS genetics 2012
  • “...(P) Nham_0582 III m6A a Nham_0803 II ND b Nham_0842 II ND Nham_1185 II ND Nham_1353 II ND Nham_2515 II ND Nham_3225 II m6A a G A NTC Nham_3845 II ND Nham_4499 II ND a Weak signal in dot blot assays and verified by HPLC-QTOF/MS analysis;...”

M.Nsi260I Type II methyltransferase recognizing CAACAT with methylation at 5(m6A) from Neisseria sicca FDAARGOS_260
Aligns to 23:86 / 976 (6.6%), covers 98.6% of PF06634, 68.3 bits

M.Pbo13188I Type II methyltransferase recognizing CTCAAT with methylation at 5(m6A) from Paenibacillus borealis DSM 13188
Aligns to 18:82 / 944 (6.9%), covers 87.7% of PF06634, 66.7 bits

M.Vsp61001IV Type II methyltransferase recognizing CAACAT with methylation at 5(m6A) from Vibrio species HBUAS61001
Aligns to 19:82 / 1000 (6.4%), covers 98.6% of PF06634, 66.5 bits

M.Spu10737VI Type II methyltransferase recognizing GCACAC with methylation at 5(m6A) from Shewanella putrefaciens NCTC10737
Aligns to 19:82 / 1004 (6.4%), covers 97.3% of PF06634, 65.4 bits

M.Pae6684I Type II methyltransferase recognizing CAACAG with methylation at 5(m6A) from Pseudomonas aeruginosa PSE6684
Aligns to 24:87 / 1005 (6.4%), covers 97.3% of PF06634, 64.7 bits

M.EcoA17I Type II methyltransferase recognizing RGACAG with methylation at 5(m6A) from Escherichia coli A17
M.EcoHBIV Type II methyltransferase recognizing RGACAG with methylation at 5(m6A) from Escherichia coli HB-Coli0
Aligns to 18:81 / 945 (6.8%), covers 68.5% of PF06634, 60.9 bits

M.Cko86II Type II methyltransferase recognizing RGACAG with methylation at 5(m6A) from Citrobacter koseri FDAARGOS_86
Aligns to 18:81 / 945 (6.8%), covers 68.5% of PF06634, 60.9 bits

M.PfrJS9IV Type II methyltransferase recognizing ARCCCC with methylation at 5(Nm4C) from Propionibacterium freudenreichii JS9
M.PfrJS9aIV Type II methyltransferase recognizing ARCCCC with methylation at 5(Nm4C) from Propionibacterium freudenreichii JS9a
Aligns to 13:82 / 968 (7.2%), covers 82.2% of PF06634, 48.7 bits

PF0568 hypothetical protein from Pyrococcus furiosus DSM 3638
Aligns to 16:83 / 144 (47.2%), covers 80.8% of PF06634, 45.2 bits

• SurR: a transcriptional activator and repressor controlling hydrogen and elemental sulphur metabolism in Pyrococcus furiosus
  Lipscomb, Molecular microbiology 2009
  • “...GTTGAAAACTTCAAGTT 67 51 hydrogenase expression/formation protein PF0559 + GTTTCTAACTTTTGGTT 48 32 hydrogenase expression/formation regulatory protein PF0568 GTTTATAACGCTATGTT 24 8 hypothetical protein PF0569 + GTTTATAACGCTATGTT 34 18 hypothetical protein PF0891 + GTTTTTAACCTTTGGTT 142 126 Hydrogenase I subunit beta, hydB1 ( Ma et al., 1993 ) PF0913 GTTCAAAACCAAAGGTT...”

M.PhoIII Type II methyltransferase recognizing GCNAGA with methylation at 4(m6A) from Pyrococcus horikoshii OT3
PH0905 hypothetical protein from Pyrococcus horikoshii OT3
Aligns to 10:76 / 996 (6.7%), covers 80.8% of PF06634, 42.7 bits

• Characterization of an extremely thermostable restriction enzyme, PspGI, from a Pyrococcus strain and cloning of the PspGI restriction-modification system in Escherichia coli
  Morgan, Applied and environmental microbiology 1998
  • “...four putative type II methylases (PH0338, PH0584, PH0905, and PH1032) that contain conserved motifs of aminomethyltransferases. The putative methylase PH1032 is...”

M.TliII Type II methyltransferase recognizing GCAGG with methylation at 3(m6A) from Thermococcus litoralis
Aligns to 10:74 / 1023 (6.4%), covers 78.1% of PF06634, 36.7 bits

TRQ2_1808 hypothetical protein from Thermotoga sp. RQ2
CTN_1590 hypothetical protein from Thermotoga neapolitana DSM 4359
Aligns to 9:71 / 1008 (6.2%), covers 65.8% of PF06634, 35.4 bits

• A pipeline for completing bacterial genomes using in silico and wet lab approaches
  Puranik, BMC genomics 2015
  • “...TM0985 TRQ2_1810 CTN_1593 Present hypothetical protein TM0986 TRQ2_1809 CTN_1592 & CTN_1591 Present hypothetical protein TM0987 TRQ2_1808 CTN_1590 Disrupted hypothetical protein TM0988 TRQ2_1807 CTN_1589 Disrupted hypothetical protein TM0989 TRQ2_1806 CTN_1588 Present hypothetical protein TM0990 TRQ2_1805 CTN_1587 Disrupted hypothetical protein TM0991 TRQ2_1804 CTN_1586 Disrupted hypothetical protein TM0992 Absent...”
• A pipeline for completing bacterial genomes using in silico and wet lab approaches
  Puranik, BMC genomics 2015
  • “...TRQ2_1810 CTN_1593 Present hypothetical protein TM0986 TRQ2_1809 CTN_1592 & CTN_1591 Present hypothetical protein TM0987 TRQ2_1808 CTN_1590 Disrupted hypothetical protein TM0988 TRQ2_1807 CTN_1589 Disrupted hypothetical protein TM0989 TRQ2_1806 CTN_1588 Present hypothetical protein TM0990 TRQ2_1805 CTN_1587 Disrupted hypothetical protein TM0991 TRQ2_1804 CTN_1586 Disrupted hypothetical protein TM0992 Absent CTN_1585...”

TM0987 conserved hypothetical protein from Thermotoga maritima MSB8
Aligns to 9:71 / 1008 (6.2%), covers 65.8% of PF06634, 35.4 bits

• A pipeline for completing bacterial genomes using in silico and wet lab approaches
  Puranik, BMC genomics 2015
  • “...protein TM0985 TRQ2_1810 CTN_1593 Present hypothetical protein TM0986 TRQ2_1809 CTN_1592 & CTN_1591 Present hypothetical protein TM0987 TRQ2_1808 CTN_1590 Disrupted hypothetical protein TM0988 TRQ2_1807 CTN_1589 Disrupted hypothetical protein TM0989 TRQ2_1806 CTN_1588 Present hypothetical protein TM0990 TRQ2_1805 CTN_1587 Disrupted hypothetical protein TM0991 TRQ2_1804 CTN_1586 Disrupted hypothetical protein TM0992...”

M.PaqY4III Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Pseudemcibacter aquimaris Y4
Aligns to 30:96 / 711 (9.4%), covers 74.0% of PF06634, 34.0 bits

M.Bbr8344I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella bronchiseptica NCTC8344
M.Bbr10542I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella bronchiseptica NCTC10542
Aligns to 43:95 / 731 (7.3%), covers 45.2% of PF06634, 33.3 bits

M.Nve54II Type II methyltransferase recognizing TCCTCGG with methylation at 5(Nm4C) from Natrinema versiforme BOL5-4
FEJ81_19855 DUF1156 domain-containing protein from Natrinema versiforme
Aligns to 26:86 / 965 (6.3%), covers 65.8% of PF06634, 32.3 bits

• Genome Sequences and Methylation Patterns of Natrinema versiforme BOL5-4 and Natrinema pallidum BOL6-1, Two Extremely Halophilic Archaea from a Bolivian Salt Mine
  DasSarma, Microbiology resource announcements 2019
  • “...A YC 100 FEJ81_15230 C TA G 97.0 FEJ81_09745 98.7 FGF80_01935 TCCT C GG 96.0 FEJ81_19855 GCA A T 71.4 FEJ81_20490 GTAYT C G 98.8 FGF80_00870 CAGYA A C 100 FGF80_10950 a Locations of methylated bases are in bold for the top strand and underlined for...”

M.Bpe137II Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella pertussis 137
M.Bpe10910I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella pertussis NCTC10910
M.Bpe13667I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella pertussis NCTC13667
M.Bpe1920II Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella pertussis B1920
M.Bpe195I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella pertussis FDAARGOS_195
Aligns to 43:95 / 731 (7.3%), covers 45.2% of PF06634, 31.7 bits

M.Bbr8762I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella bronchiseptica NCTC8762
Aligns to 43:95 / 731 (7.3%), covers 45.2% of PF06634, 31.7 bits

M.Bpa5952I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella parapertussis NCTC5952
M.Bpa10520I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella parapertussis NCTC10520
M.Bpa10853I Type II methyltransferase recognizing AAGCTT with methylation at 4(Nm4C) from Bordetella parapertussis NCTC10853
Aligns to 43:95 / 731 (7.3%), covers 45.2% of PF06634, 31.7 bits

Or search for genetic data about PF06634 in the Fitness Browser