PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06649 (DUF1161)

PF06649.12 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPTB2193 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 23:76 / 81 (66.7%), covers 100.0% of PF06649, 93.6 bits

PFL_0044 conserved hypothetical protein (NCBI) from Pseudomonas fluorescens Pf-5
Aligns to 24:74 / 77 (66.2%), covers 100.0% of PF06649, 90.4 bits

PA0060 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 24:74 / 77 (66.2%), covers 100.0% of PF06649, 86.9 bits

Q9I793 Uncharacterized protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PA14_00480 hypothetical protein (NCBI) from Pseudomonas aeruginosa UCBPP-PA14
PA0039 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 25:74 / 75 (66.7%), covers 100.0% of PF06649, 85.6 bits

YnfD / b1586 DUF1161 domain-containing protein YnfD from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1586 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
NP_416103 DUF1161 domain-containing protein YnfD from Escherichia coli str. K-12 substr. MG1655
P76172 Uncharacterized protein YnfD from Escherichia coli (strain K12)
Aligns to 26:79 / 101 (53.5%), covers 100.0% of PF06649, 78.0 bits

Z2573 orf, hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 EDL933
ECs2292 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 27:80 / 102 (52.9%), covers 100.0% of PF06649, 78.0 bits

Or search for genetic data about PF06649 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory