Family Search for PF06649 (DUF1161)
PF06649 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
PA0039 hypothetical protein from Pseudomonas aeruginosa PAO1
Q9I793 DUF1161 domain-containing protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PA14_00480 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 25:74 / 75 (66.7%), covers 100.0% of PF06649, 92.2 bits
- Distinct transcriptome and traits of freshly dispersed <i>Pseudomonas aeruginosa</i> cells
Kalia, mSphere 2024 - “...Upregulated 0.531742 PA5495 Homoserine kinase 0.04312 Upregulated 0.320808 PA0027 Hypothetical protein Downregulated 1.14918 Downregulated 1.38885 PA0039 Hypothetical protein Downregulated 0.97711 Downregulated 1.29894 PA0078 tssL1 Downregulated 1.61908 Downregulated 1.653 PA0396 pilU twitching motility protein Downregulated 0.81476 Downregulated 1.03689 PA0451 Conserved hypothetical protein Downregulated 1.49988 Downregulated 0.92378 PA0553...”
- A Shaving Proteomic Approach to Unveil Surface Proteins Modulation of Multi-Drug Resistant Pseudomonas aeruginosa Strains Isolated From Cystic Fibrosis Patients
Montemari, Frontiers in medicine 2022 - “...Periplasmic/Cytoplasmic 0.01 Q9HU45 PA5139 PBPb domain-containing protein 0.451 Q9I6J4 spuA Probable glutamine amidotransferase 100 Q9I793 PA0039 Uncharacterized protein 5.972 G3XD94 wbpA UDP-N-acetyl-D-glucosamine 6-dehydrogenase Membrane 100 Q9HUE1 PA5028 AAA_31 domain-containing protein CytoplasmicMembrane 0.01 Q9I3F6 aer Aerotaxis receptor Aer 100 pae02030 Bacterial chemotaxis Q9I5M1 migA Alpha-1,6-rhamnosyltransferase MigA 0.01...”
- Direct identification of bacterial and human proteins from infected wounds in living 3D skin models
Havlikova, Scientific reports 2020 - “...9,471.1664 9,471.1468 2.0673 DNA-binding protein HU- A6TGQ7 30 48 P. aeruginosa PS1054 5,731.9826 5,731.9816 0.1814 PA0039 Q9I793 -Signal peptide (121) 13 48 8,557.5098 8,557.5077 0.2431 PA4739 Q9HV60 -Signal peptide (132) 44 72 9,081.0514 9,081.0445 0.7576 DNA-binding protein HU- P05384 26 72 S100 proteins are present in...”
- “...on agar 12 . The first uncharacterized protein is predicted on the basis of gene PA0039 with signal peptide (121) cleaved. PA0039 was the only protein detected in the mass spectra after 48h that was sufficiently abundant to perform top-down tandem mass spectrometry (MS/MS) analysis. The...”
- Top-Down LESA Mass Spectrometry Protein Analysis of Gram-Positive and Gram-Negative Bacteria
Kocurek, Journal of the American Society for Mass Spectrometry 2017 - “...Sampled fresh 951.8583 +8 7606.81 0.0 UPF0337 protein PA4738 Q9HV61 58 956.3376 +6 5731.98 0.1 PA0039 Q9I793 24 Incubation: 24 h, 37 C Sampled fresh -signal peptide, 442 disulfide 958.5127 +16 15,320.09 3.5 PA5178 Q9HU11 27 Incubation: 48 h, 37 C Sampled fresh -Met 983.5923 +10...”
- “...that the signal peptide is actually cleaved at position 32. The tandem mass spectrum of PA0039, similarly detected with a missing signal peptide, showed robust evidence of a hitherto unannotated disulfide bridge between the cysteines at positions 4 and 42. No fragmentation was observed between these...”
- Development of a multilocus sequence typing scheme for the opportunistic pathogen Pseudomonas aeruginosa
Curran, Journal of clinical microbiology 2004 - “...PA0030 PA0025 1329 M PA0059 PA0088 PA0021 2351 M PA0071 PA0027 1349 M PA0039 PA0028 8079 1327 M 91 47 62 54 121 8 92 46 38 39 31 30 81 108 73 94 126 85 93 58...”
- Proteome-wide identification of druggable targets and inhibitors for multidrug-resistant <i>Pseudomonas aeruginosa</i> using an integrative subtractive proteomics and virtual screening approach
Vemula, Heliyon 2025 - A Shaving Proteomic Approach to Unveil Surface Proteins Modulation of Multi-Drug Resistant Pseudomonas aeruginosa Strains Isolated From Cystic Fibrosis Patients
Montemari, Frontiers in medicine 2022 - “...protein Periplasmic/Cytoplasmic 0.01 Q9HU45 PA5139 PBPb domain-containing protein 0.451 Q9I6J4 spuA Probable glutamine amidotransferase 100 Q9I793 PA0039 Uncharacterized protein 5.972 G3XD94 wbpA UDP-N-acetyl-D-glucosamine 6-dehydrogenase Membrane 100 Q9HUE1 PA5028 AAA_31 domain-containing protein CytoplasmicMembrane 0.01 Q9I3F6 aer Aerotaxis receptor Aer 100 pae02030 Bacterial chemotaxis Q9I5M1 migA Alpha-1,6-rhamnosyltransferase MigA...”
- Direct identification of bacterial and human proteins from infected wounds in living 3D skin models
Havlikova, Scientific reports 2020 - “...9,471.1468 2.0673 DNA-binding protein HU- A6TGQ7 30 48 P. aeruginosa PS1054 5,731.9826 5,731.9816 0.1814 PA0039 Q9I793 -Signal peptide (121) 13 48 8,557.5098 8,557.5077 0.2431 PA4739 Q9HV60 -Signal peptide (132) 44 72 9,081.0514 9,081.0445 0.7576 DNA-binding protein HU- P05384 26 72 S100 proteins are present in the...”
- Top-Down LESA Mass Spectrometry Protein Analysis of Gram-Positive and Gram-Negative Bacteria
Kocurek, Journal of the American Society for Mass Spectrometry 2017 - “...fresh 951.8583 +8 7606.81 0.0 UPF0337 protein PA4738 Q9HV61 58 956.3376 +6 5731.98 0.1 PA0039 Q9I793 24 Incubation: 24 h, 37 C Sampled fresh -signal peptide, 442 disulfide 958.5127 +16 15,320.09 3.5 PA5178 Q9HU11 27 Incubation: 48 h, 37 C Sampled fresh -Met 983.5923 +10 9825.85...”
- Identification of the alternative sigma factor SigX regulon and its implications for Pseudomonas aeruginosa pathogenicity
Blanka, Journal of bacteriology 2014 - “...in gene expression in: PA14 locus no. PA14_00060 PA14_00480 PA14_05530 PA14_05550 PA14(pJN105sigX) vs PA14(pJN105) mexA oprM 2.5 2.3 2.1 2.1 8.8 15.0 4.1 3.4...”
YPTB2193 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 23:76 / 81 (66.7%), covers 100.0% of PF06649, 89.8 bits
- Molecular Darwinian evolution of virulence in Yersinia pestis
Zhou, Infection and immunity 2009 - Characterization of chromosomal regions conserved in Yersinia pseudotuberculosis and lost by Yersinia pestis
Pouillot, Infection and immunity 2008 - “...R3 is a 11,408-bp region composed of nine genes (YPTB2193 to YPTB2201) (Table 2 and Fig. 1B). Similarly to the IP32953orf2 mutant, IP32953R3 displayed, at 37C...”
- “...Among the nine genes carried by R3, five (YPTB2193, YPTB2194, YPTB2198, YPTB2199, and YPTB2201) encode hypothetical proteins of unknown function (see Table S4...”
PFL_0044 conserved hypothetical protein from Pseudomonas fluorescens Pf-5
Aligns to 24:74 / 77 (66.2%), covers 98.1% of PF06649, 87.9 bits
PA0060 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 24:74 / 77 (66.2%), covers 98.1% of PF06649, 86.7 bits
PP0090 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 45:95 / 98 (52.0%), covers 98.1% of PF06649, 86.1 bits
PP0087 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 38:86 / 87 (56.3%), covers 100.0% of PF06649, 81.5 bits
ECs2292 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Z2573 orf, hypothetical protein from Escherichia coli O157:H7 EDL933
Aligns to 27:80 / 102 (52.9%), covers 100.0% of PF06649, 68.6 bits
YnfD / b1586 DUF1161 domain-containing protein YnfD from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1586 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
NP_416103 DUF1161 domain-containing protein YnfD from Escherichia coli str. K-12 substr. MG1655
P76172 Uncharacterized protein YnfD from Escherichia coli (strain K12)
Aligns to 26:79 / 101 (53.5%), covers 100.0% of PF06649, 68.6 bits
- 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
, Haematologica 2013 - In vitro transcription profiling of the σS subunit of bacterial RNA polymerase: re-definition of the σS regulon and identification of σS-specific promoter sequence elements
Maciag, Nucleic acids research 2011 - “...yffP Predicted protein, prophage b2447 1.52 yidK Putative membrane transporter b3679 1.53 ynfD Predicted protein b1586 1.54 yfiL Putative lipoprotein b2602 1.55 yi91a Unknown, in CP4-6 prophage sequence b0255 1.56 yfjL Unknown, possible prophage gene b2625 1.57 S ( 9 ) yagL Unknown, prophage protein b0278...”
- Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12
Smulski, Journal of bacteriology 2001 - “...b1273 b1285 b1321 b1333 b1376 b1378 b1414 b1446 b1454 b1586 b1598 b1667 b1678 b1725 b1778 b1783 b1816 b1869 b1870 b1871 b1953 b1955 b2007 b2080 b2098 b2112...”
- Small genes/gene-products in Escherichia coli K-12.
Wasinger, FEMS microbiology letters 1998 (PubMed)- GeneRIF: N-terminus verified by Edman degradation on mature peptide
- Functional Prediction of Biological Profile During Eutrophication in Marine Environment
Sbaoui, Bioinformatics and biology insights 2022 - “...CP4-6 prophage; protein YmdC P75919 Putative synthase with phospholipase D/nuclease domain YnbE P64448 Lipoprotein YnfD P76172 DUF1161 domain-containing protein YtfJ P39187 Conserved hypothetical protein The predictive analysis has been performed using the bacterium strain E coli K12 as model organism for the aquatic bacterioplankton; E coli...”
- Identification of specific protein amino acid substitutions of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli ST131: a proteomics approach using mass spectrometry
Nakamura, Scientific reports 2019 - “...is unknown. The m/z 8448 peak was identified as uncharacterized protein YnfD (Uniprot accession no. P76172), and its family was unclear. The chain domain of YnfD protein was DUF1161, and its function is also unknown. The m/z 9710 peak was identified as acid stress chaperone HdeA...”
Or search for genetic data about PF06649 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory