Family Search for PF06672 (DUF1175)

April 2024: See Interactive Tools for Functional Annotation of Bacterial Genomes for advice on using these tools.

PF06672 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

TM0986 conserved hypothetical protein from Thermotoga maritima MSB8
Aligns to 93:318 / 318 (71.1%), covers 99.5% of PF06672, 328.6 bits

• A pipeline for completing bacterial genomes using in silico and wet lab approaches
  Puranik, BMC genomics 2015
  • “...Disrupted hypothetical protein TM0984 TRQ2_1811 CTN_1594 Disrupted hypothetical protein TM0985 TRQ2_1810 CTN_1593 Present hypothetical protein TM0986 TRQ2_1809 CTN_1592 & CTN_1591 Present hypothetical protein TM0987 TRQ2_1808 CTN_1590 Disrupted hypothetical protein TM0988 TRQ2_1807 CTN_1589 Disrupted hypothetical protein TM0989 TRQ2_1806 CTN_1588 Present hypothetical protein TM0990 TRQ2_1805 CTN_1587 Disrupted hypothetical...”

TRQ2_1809 hypothetical protein from Thermotoga sp. RQ2
Aligns to 87:312 / 312 (72.4%), covers 99.5% of PF06672, 328.1 bits

• A pipeline for completing bacterial genomes using in silico and wet lab approaches
  Puranik, BMC genomics 2015
  • “...hypothetical protein TM0984 TRQ2_1811 CTN_1594 Disrupted hypothetical protein TM0985 TRQ2_1810 CTN_1593 Present hypothetical protein TM0986 TRQ2_1809 CTN_1592 & CTN_1591 Present hypothetical protein TM0987 TRQ2_1808 CTN_1590 Disrupted hypothetical protein TM0988 TRQ2_1807 CTN_1589 Disrupted hypothetical protein TM0989 TRQ2_1806 CTN_1588 Present hypothetical protein TM0990 TRQ2_1805 CTN_1587 Disrupted hypothetical protein...”

Q9HVT1 Uncharacterized protein PA4490 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PA4490 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 15:211 / 212 (92.9%), covers 93.6% of PF06672, 244.1 bits

• A Shaving Proteomic Approach to Unveil Surface Proteins Modulation of Multi-Drug Resistant Pseudomonas aeruginosa Strains Isolated From Cystic Fibrosis Patients
  Montemari, Frontiers in medicine 2022
  • “...Q9I413 PA1331 Uncharacterized protein 100 Q9I5R2 PA0659 Uncharacterized protein 0.01 Q9I6D5 PA0359 Uncharacterized protein 100 Q9HVT1 PA4490 Uncharacterized protein PA4490 100 Q9I1B3 PA2366 Uricase PuuD 0.01 pae02025 Biofilm formation Q9HU14 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ CytoplasmicMembrane/Cytoplasmic 0.01 Q9I6V6 aer2 Aerotaxis transducer Aer2 0.01 0.01 pae02030 Bacterial chemotaxis...”
• A Shaving Proteomic Approach to Unveil Surface Proteins Modulation of Multi-Drug Resistant Pseudomonas aeruginosa Strains Isolated From Cystic Fibrosis Patients
  Montemari, Frontiers in medicine 2022
  • “...PA1331 Uncharacterized protein 100 Q9I5R2 PA0659 Uncharacterized protein 0.01 Q9I6D5 PA0359 Uncharacterized protein 100 Q9HVT1 PA4490 Uncharacterized protein PA4490 100 Q9I1B3 PA2366 Uricase PuuD 0.01 pae02025 Biofilm formation Q9HU14 cysQ 3'(2'),5'-bisphosphate nucleotidase CysQ CytoplasmicMembrane/Cytoplasmic 0.01 Q9I6V6 aer2 Aerotaxis transducer Aer2 0.01 0.01 pae02030 Bacterial chemotaxis Protein...”
• Assembly of an atypical α-macroglobulin complex from Pseudomonas aeruginosa
  Zouhir, Scientific reports 2018
  • “...deletion in PA4491 ( magB ) in PA01 This work PA01 magC Internal deletion in PA4490 ( magC) in PA01 This work PA01 magD Internal deletion in PA4489 ( magD ) in PA01 Robert-Genthon et al . 15 PA01 magE Internal deletion in PA4488 ( magE...”
• Unique features of a Pseudomonas aeruginosa α2-macroglobulin homolog
  Robert-Genthon, mBio 2013
  • “...c PA4492 MagA COG4676 5.78 29,297 GLPA 25 LAE PA4491 MagB d COG4685 5.12 64,215 PA4490 MagC COG3234 9.90 24,001 GVARG 21 EPA PA4489 MagD (A2M) COG2373 5.48 167,429 AAVQA 26 EDT PA4488 MagE COG5445 8.82 61,710 LLLRA 20 AEA PA4487 MagF COG4676 5.12 28,145 LVAWA...”
• Genomewide identification of genetic determinants of antimicrobial drug resistance in Pseudomonas aeruginosa
  Dötsch, Antimicrobial agents and chemotherapy 2009
  • “...PA14_30210d PA14_60280d PA14_60280d PA4430 PA4431 PA4454 PA4463 PA4490 PA4536 PA4600 PA4609 PA4733 PA4766 PA4781 PA4811 PA4838 PA4939 PA4942 PA4945 PA4946d...”
  • “...PA1549 PA2023 PA2693 PA3224 PA3702 PA3831 PA4109 PA4429c PA4431 PA4490 PA4600 PA5038 PA5193 --c --c Gene name Log2 change in the MICa of: PIPb 5d,e oprD 5...”

PA14_58260 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 15:211 / 212 (92.9%), covers 93.1% of PF06672, 242.8 bits

• Genomewide identification of genetic determinants of antimicrobial drug resistance in Pseudomonas aeruginosa
  Dötsch, Antimicrobial agents and chemotherapy 2009
  • “...ortholog PA14_57560 PA14_57570 PA14_57850 PA14_57950 PA14_58260 PA14_58850 PA14_60860 PA14_60990 PA14_62630 PA14_63040 PA14_63210 PA14_63580 PA14_63970...”
  • “...PA14_16500 PA14_14470 PA14_10800 PA14_57540 PA14_57570 PA14_58260 PA14_60860 PA14_66600 PA14_68610 PA14_18070 PA14_30210 PA0090 PA0958 PA1095 PA1348 PA1549...”

YfaT / b2229 DUF1175 domain-containing protein YfaT from Escherichia coli K-12 substr. MG1655 (see paper)
Aligns to 16:206 / 207 (92.3%), covers 91.3% of PF06672, 234.1 bits

CTN_1591 hypothetical protein from Thermotoga neapolitana DSM 4359
Aligns to 1:138 / 138 (100.0%), covers 61.0% of PF06672, 208.1 bits

• A pipeline for completing bacterial genomes using in silico and wet lab approaches
  Puranik, BMC genomics 2015
  • “...TRQ2_1811 CTN_1594 Disrupted hypothetical protein TM0985 TRQ2_1810 CTN_1593 Present hypothetical protein TM0986 TRQ2_1809 CTN_1592 & CTN_1591 Present hypothetical protein TM0987 TRQ2_1808 CTN_1590 Disrupted hypothetical protein TM0988 TRQ2_1807 CTN_1589 Disrupted hypothetical protein TM0989 TRQ2_1806 CTN_1588 Present hypothetical protein TM0990 TRQ2_1805 CTN_1587 Disrupted hypothetical protein TM0991 TRQ2_1804 CTN_1586...”

Or search for genetic data about PF06672 in the Fitness Browser