Family Search for PF06693 (DUF1190)

PF06693.11 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YgiB / b3037 DUF1190 domain-containing protein YgiB from Escherichia coli K-12 substr. MG1655 (see 3 papers)
S3282 hypothetical protein (RefSeq) from Shigella flexneri 2a str. 2457T
b3037 conserved outer membrane protein (RefSeq) from Escherichia coli str. K-12 substr. MG1655
Z4394 hypothetical protein (RefSeq) from Escherichia coli O157:H7 EDL933
Aligns to 41:210 / 223 (76.2%), covers 100.0% of PF06693, 194.1 bits

• Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice
  Wotzka, Nature microbiology 2019
  • “...As indicated, mice were shifted to a Western-type diet without fiber (symbol: , WD, BioServ, S3282; 60% kcal fat; irradiated; per weight: 36% fat, 20.5% protein, 35.7% carbohydrates, 0% fiber), control diet without fiber (symbol: , BioServ, S4031; 16% kcal fat; irradiated; per weight: 7.2% fat,...”
• Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
  Bonocora, PLoS genetics 2015
  • “...+ b3028 mdaB 964 11.709 IS37 3178185 1 GC GGC GCGGGAT TTGC A 3178183 + b3037 ygiB + b3038 ygiC 258 10.055 IS38 3206700 2 A TGGC ACCAAAC TTGC T 3206687 + b3063 ttdT + b3065 rpsU 2103 11.358 IS39 3241894 1 T TGG TGCCGAATA TGC...”
• Membrane stresses induced by overproduction of free fatty acids in Escherichia coli
  Lennen, Applied and environmental microbiology 2011
  • “...b1530 b1531 b1532 b1611 b1852 b1973 b2159 b2237 b3035 b3037 b3038 b3506 b3507 b3508 b3509 b3510 b3624 b3625 b3800 b3908 b3924 b4025 b4062 b4177 b4396 b4637 ybaO...”
• Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism
  Sharma, BMC microbiology 2017
  • “...8.6E-06 ycfJ Z1749 Membrane protein 24.98 1.5E-14 ycfT Z1756 Inner membrane protein 3.25 6.5E-04 ygiB Z4394 Outer membrane protein 1.55 0.01 upp P Z4410 Undecaprenyl pyrophosphate phosphatase 1.72 0.01 yjbE Z5624 Predicted protein mediating extracellular polysaccharide biosynthesis 19.61 1.0E-03 yjbF Z5625 Predicted protein mediating extracellular polysaccharide...”
• Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies
  Pieper, PloS one 2011
  • “...ymcA 78668 L (IM or OM) OM 120 9 SSAC 19 H 2 hypothetical protein Z4394 Z4394 ygiB 23478 L (IM or OM) PP 110 46 LAGC 37 E 2 putative lipoprotein YnbE Z2327 ynbE 6815 L (IM or OM) unkn 109 0 LVGC 17 T...”

SEN3030 possible lipoprotein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 41:210 / 223 (76.2%), covers 99.4% of PF06693, 193.0 bits

• On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004
  Allard, PloS one 2013
  • “...subsp. enterica serovar Enteritidis str. P125109] Length=230 51 864_input.aln 864_protein.fas 126 AC 42 ED ygiB SEN3030 ref|YP_002245097.1| hypothetical protein SEN3030 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length=223 52 865_input.aln 865_protein.fas 40 GT 14 AS nrfC SEN4049 ref|YP_002246083.1| cytochrome c-type biogenesis protein [Salmonella enterica subsp....”

AL538_RS15985 DUF1190 domain-containing protein from Vibrio harveyi
Aligns to 39:188 / 189 (79.4%), covers 95.7% of PF06693, 97.8 bits

• Analysis of Vibrio harveyi adaptation in sea water microcosms at elevated temperature provides insights into the putative mechanisms of its persistence and spread in the time of global warming
  Montánchez, Scientific reports 2019
  • “...Fumarate reductase subunit D 1.508 2.045 1.847 2 Stress responses Cell envelope stress: Phage-shock-protein response AL538_RS15985 Phage shock protein PspA 0.908 0.819 1.526 4 AL538_RS15995 Envelope stress response membrane protein PspC 1.042 0.263 1.819 4 Stringent response AL538_RS11565 Stringent starvation protein B 1.121 0.789 1.168 2...”

STM4375 putative inner membrane protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 74.0 bits

• Salmonella serovar identification using PCR-based detection of gene presence and absence
  Arrach, Journal of clinical microbiology 2008
  • “...STM3941, STM4031, STM4191, STM4197, STM4209, STM4317, STM4375, STM4381, STM4523, STM4592, STM4594, PSLT016, PSLT018, PSLT025, PSLT085, STY1605, STY2296,...”

SC4250 putative inner membrane protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 73.3 bits

• Ferrets
  Morrisey, Exotic Animal Formulary 2018
• A new class of Caulobacter crescentus flagellar genes
  Leclerc, Journal of bacteriology 1998
  • “...SC3809 SC3898 SC3899 SC3971 SC3973 SC3975 SC4016 SC4250 Wild type syn-1000 bla-6 syn-1000 ctrA401 recA526 zzz::Tn5 str-30 flmE102 (formerly flaZ102) flmA104...”
  • “...of Caulobacter strains SC3971, SC3973, SC4016, and SC4250 were pulse-labeled with [35S]methionine at 15-min intervals during the cell cycle. (A)...”

YjfM / b4185 DUF1190 domain-containing protein YjfM from Escherichia coli K-12 substr. MG1655 (see paper)
b4185 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 71.2 bits

• YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport
  Herzberg, Journal of bacteriology 2006
  • “...b0248 b0519 b4026 b1742 b0689 b4249 b0685 b3948 b4047 b1470 b0844 b4185 b1877 b0787 b0309 b1500 12.1 11.3 11.3 8.6 7.5 7.5 7 6.1 6.1 5.3 4.9 4.9 4.9 4.6 4.6 4.6...”
• Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12
  Sabina, Journal of bacteriology 2003
  • “...rplO b1593 gapC_2 dadA b0354 b3857 b2034 b2003 b1983 b4185 b4202 b3845 b2447 b3298 b1601 b2272 b4200 b3313 b3057 b0580 b3312 b0833 b3683 b4159 b4201 b3667 b2451...”

S4607 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 68.5 bits

• Alcohol and the Intestine
  Patel, Biomolecules 2015
  • “...Baarlen P. Epithelial crosstalk at the microbiota-mucosal interface Proc. Natl. Acad. Sci. USA 2011 108 S4607 S4614 10.1073/pnas.1000092107 20826446 56. Shulzhenko N. Morgun A. Hsiao W. Battle M. Yao M. Gavrilova O. Orandle M. Mayer L. Macpherson A.J. McCoy K.D. Crosstalk between B lymphocytes, microbiota and...”

sll0022 unknown protein (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 54:246 / 249 (77.5%), covers 84.5% of PF06693, 28.2 bits

• Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium
  Liberton, Molecular & cellular proteomics : MCP 2016
  • “...and the remaining three have four or more helices. Sll0022 was identified as a nonintegral lipoprotein, whereas the remaining six are soluble proteins on the...”

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