PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06693 (DUF1190)

PF06693.11 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YgiB / b3037 DUF1190 domain-containing protein YgiB from Escherichia coli K-12 substr. MG1655 (see 3 papers)
S3282 hypothetical protein (RefSeq) from Shigella flexneri 2a str. 2457T
b3037 conserved outer membrane protein (RefSeq) from Escherichia coli str. K-12 substr. MG1655
Z4394 hypothetical protein (RefSeq) from Escherichia coli O157:H7 EDL933
Aligns to 41:210 / 223 (76.2%), covers 100.0% of PF06693, 194.1 bits

SEN3030 possible lipoprotein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 41:210 / 223 (76.2%), covers 99.4% of PF06693, 193.0 bits

AL538_RS15985 DUF1190 domain-containing protein from Vibrio harveyi
Aligns to 39:188 / 189 (79.4%), covers 95.7% of PF06693, 97.8 bits

STM4375 putative inner membrane protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 74.0 bits

SC4250 putative inner membrane protein (NCBI) from Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 73.3 bits

YjfM / b4185 DUF1190 domain-containing protein YjfM from Escherichia coli K-12 substr. MG1655 (see paper)
b4185 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 71.2 bits

S4607 hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 65:211 / 212 (69.3%), covers 98.8% of PF06693, 68.5 bits

sll0022 unknown protein (NCBI ptt file) from Synechocystis sp. PCC 6803
Aligns to 54:246 / 249 (77.5%), covers 84.5% of PF06693, 28.2 bits

Or search for genetic data about PF06693 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory