Family Search for PF06711 (DUF1198)

PF06711 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YPO2654 putative membrane protein from Yersinia pestis CO92
Aligns to 1:143 / 149 (96.0%), covers 100.0% of PF06711, 249.7 bits

• Finding the needle in the haystack: towards solving the protein-folding problem computationally
  Li, Critical reviews in biochemistry and molecular biology 2018
  • “...model with a crystal structure (PDB code: 5tf3) of the CASP11 target T0837, hypothetical protein YPO2654 from Yersinia pestis . This model has a C-RMSD of 2.9 from the crystal structure. (D) Superposition of a BCL::Fold-predicted structure model with a solution NMR structure (PDB code: 2mq8)...”

YicN / b3663 DUF1198 domain-containing protein YicN from Escherichia coli K-12 substr. MG1655
P0ADL3 Uncharacterized protein YicN from Escherichia coli (strain K12)
Aligns to 1:143 / 150 (95.3%), covers 99.3% of PF06711, 241.2 bits

• Toward Single Bacterium Proteomics
  Végvári, Journal of the American Society for Mass Spectrometry 2023
  • “...yegR P76406 [8187] [K].MQIVELK.[T] 860.49 430.75 +2 59.24 1 184.26 0.00% uncharacterized protein YicN yicN P0ADL3 [2734] [K].AIRRLSDR.[L] 986.59 493.80 +2 52.33 1 275.88 0.00% a Italic = observation only without quantification. An alternative FDR 0.05 control was performed with the Target Decoy PSM Validator node...”

ECs4599 hypothetical protein from Escherichia coli O157:H7 str. Sakai
c4587 Hypothetical protein yicN from Escherichia coli CFT073
Aligns to 10:152 / 159 (89.9%), covers 99.3% of PF06711, 240.9 bits

• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...ECs4335 ECs4357 ECs4361 ECs4384 ECs4453 ECs4554 ECs4571 ECs4584 ECs4585 ECs4599 pchB O157 O157 O157 O157 O157 O157 O157 O157 ynfB ynfD asr ydiH spy yoaG yeaR...”
• In vivo gene expression analysis identifies genes required for enhanced colonization of the mouse urinary tract by uropathogenic Escherichia coli strain CFT073 dsdA
  Haugen, Infection and immunity 2007
  • “...c4064 c4081 c2072 c3306 c2722 c5138 c4067 c3942 c4957 c4587 c1406 c3232 c3253 c3127 c0764 c0018 c1796 c2385 c0464 c3944 c4661 c1907 c0864 Gene 284 HAUGEN ET...”

Entcl_0038 DUF1198 domain-containing protein from [Enterobacter] lignolyticus SCF1
Aligns to 1:143 / 150 (95.3%), covers 100.0% of PF06711, 229.3 bits

• Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium
  Orellana, PloS one 2017
  • “...transport of hexoses as well as the transcripts of hexose phosphate transporter, UhpT (encoded by Entcl_0038), were more abundant in early exponential growth with lignin [ 33 ]. Other components of the two-component regulatory system were also up-regulated, including the sensory histidine kinase QseC (encoded by...”

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