Family Search for PF06711 (DUF1198)

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PF06711 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YicN / b3663 DUF1198 domain-containing protein YicN from Escherichia coli K-12 substr. MG1655
P0ADL3 Uncharacterized protein YicN from Escherichia coli (strain K12)
Aligns to 1:143 / 150 (95.3%), covers 99.3% of PF06711, 244.0 bits

• Toward Single Bacterium Proteomics
  Végvári, Journal of the American Society for Mass Spectrometry 2023
  • “...yegR P76406 [8187] [K].MQIVELK.[T] 860.49 430.75 +2 59.24 1 184.26 0.00% uncharacterized protein YicN yicN P0ADL3 [2734] [K].AIRRLSDR.[L] 986.59 493.80 +2 52.33 1 275.88 0.00% a Italic = observation only without quantification. An alternative FDR 0.05 control was performed with the Target Decoy PSM Validator node...”

ECs4599 hypothetical protein from Escherichia coli O157:H7 str. Sakai
c4587 Hypothetical protein yicN from Escherichia coli CFT073
Aligns to 10:152 / 159 (89.9%), covers 99.3% of PF06711, 243.7 bits

• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...ECs4335 ECs4357 ECs4361 ECs4384 ECs4453 ECs4554 ECs4571 ECs4584 ECs4585 ECs4599 pchB O157 O157 O157 O157 O157 O157 O157 O157 ynfB ynfD asr ydiH spy yoaG yeaR...”
• In vivo gene expression analysis identifies genes required for enhanced colonization of the mouse urinary tract by uropathogenic Escherichia coli strain CFT073 dsdA
  Haugen, Infection and immunity 2007
  • “...c4064 c4081 c2072 c3306 c2722 c5138 c4067 c3942 c4957 c4587 c1406 c3232 c3253 c3127 c0764 c0018 c1796 c2385 c0464 c3944 c4661 c1907 c0864 Gene 284 HAUGEN ET...”

Entcl_0038 DUF1198 domain-containing protein from [Enterobacter] lignolyticus SCF1
Aligns to 1:143 / 150 (95.3%), covers 100.0% of PF06711, 240.9 bits

• Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium
  Orellana, PloS one 2017
  • “...transport of hexoses as well as the transcripts of hexose phosphate transporter, UhpT (encoded by Entcl_0038), were more abundant in early exponential growth with lignin [ 33 ]. Other components of the two-component regulatory system were also up-regulated, including the sensory histidine kinase QseC (encoded by...”

YPO2654 putative membrane protein from Yersinia pestis CO92
Aligns to 1:143 / 149 (96.0%), covers 100.0% of PF06711, 238.0 bits

• Finding the needle in the haystack: towards solving the protein-folding problem computationally
  Li, Critical reviews in biochemistry and molecular biology 2018
  • “...model with a crystal structure (PDB code: 5tf3) of the CASP11 target T0837, hypothetical protein YPO2654 from Yersinia pestis . This model has a C-RMSD of 2.9 from the crystal structure. (D) Superposition of a BCL::Fold-predicted structure model with a solution NMR structure (PDB code: 2mq8)...”

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