PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06749 (DUF1218)

PF06749 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

AT4G27435 fiber (DUF1218) from Arabidopsis thaliana
Aligns to 58:153 / 173 (55.5%), covers 98.9% of PF06749, 109.9 bits

Q6T7D3 Fiber protein Fb34 from Gossypium barbadense
Aligns to 58:153 / 185 (51.9%), covers 98.9% of PF06749, 108.6 bits

AT1G52910 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 58:154 / 175 (55.4%), covers 100.0% of PF06749, 106.7 bits

AT3G15480 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 58:154 / 175 (55.4%), covers 100.0% of PF06749, 106.2 bits

AT5G17210 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 61:155 / 209 (45.5%), covers 98.9% of PF06749, 103.4 bits

AT1G68220 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 59:155 / 201 (48.3%), covers 98.9% of PF06749, 89.1 bits

AT1G13380 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 62:154 / 188 (49.5%), covers 98.9% of PF06749, 88.1 bits

NP_001321400 chitin synthase, putative (DUF1218) from Arabidopsis thaliana
Aligns to 67:157 / 184 (49.5%), covers 98.9% of PF06749, 83.0 bits

AT1G31720 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 77:167 / 194 (46.9%), covers 98.9% of PF06749, 79.3 bits

DEAL2_ARATH / O81898 Protein DESIGUAL 2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G21310 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 58:146 / 168 (53.0%), covers 98.9% of PF06749, 78.8 bits

DEAL1_ARATH / Q9ZV57 Protein VASCULATURE COMPLEXITY AND CONNECTIVITY; Protein DESIGUAL 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
AT2G32280 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 58:146 / 163 (54.6%), covers 100.0% of PF06749, 76.4 bits

MWL1_ARATH / A2RVU1 Protein MODIFYING WALL LIGNIN-1; MWL-1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 58:148 / 175 (52.0%), covers 98.9% of PF06749, 74.5 bits

DEAL3_ARATH / A2RVQ4 Protein DESIGUAL 3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
Aligns to 65:153 / 184 (48.4%), covers 98.9% of PF06749, 68.8 bits

MWL2_ARATH / O65708 Protein MODIFYING WALL LIGNIN-2; MWL-2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT4G19370 hypothetical protein (RefSeq) from Arabidopsis thaliana
NP_193672 chitin synthase, putative (DUF1218) from Arabidopsis thaliana
Aligns to 55:151 / 217 (44.7%), covers 96.8% of PF06749, 66.7 bits

DEAL4_ARATH / O23040 Protein DESIGUAL 4 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G05291 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 66:156 / 204 (44.6%), covers 100.0% of PF06749, 43.4 bits

Or search for genetic data about PF06749 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory