PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06840 (DUF1241)

PF06840 hits 20 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

NP_001006554 programmed cell death protein 10 from Gallus gallus
Q5ZIV5 Programmed cell death protein 10 from Gallus gallus
Aligns to 14:161 / 212 (69.8%), covers 99.3% of PF06840, 218.1 bits

PDC10_HUMAN / Q9BUL8 Programmed cell death protein 10; Cerebral cavernous malformations 3 protein; TF-1 cell apoptosis-related protein 15 from Homo sapiens (Human) (see 5 papers)
Aligns to 14:161 / 212 (69.8%), covers 99.3% of PF06840, 217.9 bits

PDC10_MOUSE / Q8VE70 Programmed cell death protein 10; TF-1 cell apoptosis-related protein 15 from Mus musculus (Mouse) (see paper)
XP_011984225 programmed cell death protein 10 isoform X1 from Ovis aries
NP_062719 programmed cell death protein 10 from Mus musculus
Aligns to 14:161 / 212 (69.8%), covers 99.3% of PF06840, 217.9 bits

3rqgC / Q9BUL8 Cerebral cavernous malformation 3 (ccm3) in complex with paxillin ld4 (see paper)
Aligns to 16:163 / 212 (69.8%), covers 99.3% of PF06840, 217.8 bits

Q8AVR4 Programmed cell death protein 10 from Xenopus laevis
Aligns to 14:161 / 212 (69.8%), covers 99.3% of PF06840, 217.8 bits

PDC10_RAT / Q6NX65 Programmed cell death protein 10 from Rattus norvegicus (Rat) (see paper)
XP_006232563 programmed cell death protein 10 isoform X1 from Rattus norvegicus
Aligns to 12:159 / 210 (70.5%), covers 98.7% of PF06840, 217.7 bits

H0XA12 Programmed cell death 10 from Otolemur garnettii
Aligns to 14:161 / 212 (69.8%), covers 99.3% of PF06840, 216.4 bits

C1C3N3 Programmed cell death protein 10 from Lithobates catesbeianus
Aligns to 12:159 / 210 (70.5%), covers 99.3% of PF06840, 215.1 bits

PD10A_DANRE / Q6PHH3 Programmed cell death protein 10-A from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
NP_956849 programmed cell death protein 10-A from Danio rerio
Aligns to 12:159 / 210 (70.5%), covers 99.3% of PF06840, 214.9 bits

PD10B_DANRE / Q6NWL1 Programmed cell death protein 10-B from Danio rerio (Zebrafish) (Brachydanio rerio) (see paper)
NP_998098 programmed cell death protein 10-B from Danio rerio
Aligns to 12:159 / 210 (70.5%), covers 98.7% of PF06840, 213.6 bits

NP_650459 cerebral cavernous malformation 3 from Drosophila melanogaster
Aligns to 4:156 / 208 (73.6%), covers 98.0% of PF06840, 211.4 bits

T1JN96 Brix domain-containing protein from Strigamia maritima
Aligns to 899:1049 / 1101 (13.7%), covers 98.0% of PF06840, 203.9 bits

R7TWK6 Programmed cell death protein 10 from Capitella teleta
Aligns to 6:157 / 208 (73.1%), covers 98.7% of PF06840, 203.8 bits

K1PTV5 Programmed cell death protein 10 from Crassostrea gigas
Aligns to 1:167 / 201 (83.1%), covers 91.3% of PF06840, 182.7 bits

V4B5U4 Programmed cell death protein 10 from Lottia gigantea
Aligns to 6:159 / 212 (72.6%), covers 94.0% of PF06840, 174.4 bits

PDC10_CAEEL / Q17958 Programmed cell death protein 10 homolog; Cerebral cavernous malformation protein 3 from Caenorhabditis elegans (see paper)
NP_496290 Programmed cell death protein 10 homolog from Caenorhabditis elegans
Aligns to 5:164 / 215 (74.4%), covers 98.0% of PF06840, 173.5 bits

H2KTN8 Programmed cell death protein 10 from Clonorchis sinensis
Aligns to 18:165 / 216 (68.5%), covers 94.0% of PF06840, 119.3 bits

Q5D8L4 Programmed cell death protein 10 from Schistosoma japonicum
Aligns to 19:165 / 216 (68.1%), covers 94.0% of PF06840, 115.9 bits

C4Q5Z1 Programmed cell death protein 10 from Schistosoma mansoni
Aligns to 18:165 / 216 (68.5%), covers 94.7% of PF06840, 115.4 bits

SVKA_DICDI / O61122 Serine/threonine-protein kinase svkA; Severin kinase A; EC 2.7.11.1 from Dictyostelium discoideum (Social amoeba) (see 2 papers)
DDB_G0286359, XP_637749 STE20 family protein kinase from Dictyostelium discoideum AX4
Aligns to 416:478 / 478 (13.2%), covers 32.7% of PF06840, 30.5 bits

Or search for genetic data about PF06840 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory