Family Search for PF06853 (DUF1249)

PF06853 hits 7 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PA4970 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 27:145 / 152 (78.3%), covers 100.0% of PF06853, 149.5 bits

• Pseudomonas aeruginosa two-component system CprRS regulates HigBA expression and bacterial cytotoxicity in response to LL-37 stress
  Song, PLoS pathogens 2024
  • “...PA5112 CIA_05554 esterase EstA -1.09764 0.047568 PA5035 CIA_05632 Glutamate synthase small chain GltD -1.05859 0.002013 PA4970 CIA_05698 hypothetical protein -1.33675 0.000776 PA4916 CIA_05754 NUDIX hydrolase NrtR -1.8394 0.00094 PA4906 CIA_05764 GntR family transcriptional regulator -1.18633 0.009715 PA4841 CIA_05831 NUDIX hydrolase -2.64446 0.006042 PA4839 CIA_05833 Biosynthetic arginine...”
• The Pseudomonas aeruginosa RpoH (σ³²) Regulon and Its Role in Essential Cellular Functions, Starvation Survival, and Antibiotic Tolerance
  Williamson, International journal of molecular sciences 2023
  • “...RpoH levels include PA3272, an ATP-dependent helicase, PA4971, an NTP pyrophosphohydrolase, and its adjacent genes, PA4970 (which appears to have a novel protein fold) and PA4969/ cpdA , a 3,5-cyclic-AMP phosphodiesterase. The PA3011/ topA topoisomerase and the adjacent nucleotide binding protein PA3010 are also induced by...”
  • “...RNA binding 2.1 3.4 10 3 PA4969 cpdA 3,5-cyclic-AMP phosphodiesterase 8.6 3.7 10 4 +++ PA4970 Conserved hypothetical protein 7.0 1.4 10 3 PA4971 aspP NTP pyrophosphohydrolase 11.9 6.1 10 4 1 Bold letters show overlap between genes found here and genes induced in P. aeruginosa...”
• A cross-genomic approach for systematic mapping of phenotypic traits to genes
  Jim, Genome research 2004
  • “...PA0623 PA1376 PA5043 PA5040 PA0289 PA1009 PA1661 PA4476 PA4970 PA5225 PA0461 PA0834 PA0612 PA0628 PA4879 PA2017 PA3209 PA5536 PA0080 PA0502 PA1727 PA3726 PA4605...”

CIA_05698 DUF1249 domain-containing protein from Pseudomonas aeruginosa PA14
PA14_65700 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 27:145 / 152 (78.3%), covers 100.0% of PF06853, 149.5 bits

• Pseudomonas aeruginosa two-component system CprRS regulates HigBA expression and bacterial cytotoxicity in response to LL-37 stress
  Song, PLoS pathogens 2024
  • “...CIA_05554 esterase EstA -1.09764 0.047568 PA5035 CIA_05632 Glutamate synthase small chain GltD -1.05859 0.002013 PA4970 CIA_05698 hypothetical protein -1.33675 0.000776 PA4916 CIA_05754 NUDIX hydrolase NrtR -1.8394 0.00094 PA4906 CIA_05764 GntR family transcriptional regulator -1.18633 0.009715 PA4841 CIA_05831 NUDIX hydrolase -2.64446 0.006042 PA4839 CIA_05833 Biosynthetic arginine decarboxylase...”
• Screening of the PA14NR Transposon Mutant Library Identifies Genes Involved in Resistance to Bacteriophage Infection in Pseudomomas aeruginosa
  Ho, International journal of molecular sciences 2024
  • “...actively replicating mutants. However, mutants carrying insertions in genes coding for a conserved hypothetical protein PA14_65700 and LasB elastase showed decreased viability in the stationary phase of growth, with over one log reduction in CFU for the LasB mutant ( Figure 2 ). P. aeruginosa has...”
  • “..., LasB , a putative glycosyl transferase (PA14_66110), and two conserved hypothetical proteins (PA14_21680 and PA14_65700). Insertion in lasB and PA14_21680 led to reduced viability during the stationary phase of growth, while other mutants were unaffected. All mutants showed a reduced ability to form biofilm except...”

Q9KPD6 Dehydrogenase from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Aligns to 27:140 / 148 (77.0%), covers 99.1% of PF06853, 142.4 bits

• Comprehensive in silico analyses of fifty-one uncharacterized proteins from Vibrio cholerae
  Basu, PloS one 2024
  • “...Q9KKL8 Q9KKL8 Q9KND1 Q9KND3 Q9KLK5 Q9KLK5 Q9KLK5 Q9KLK5 Q9KTC9 Q9KMX1 Q9KU75 Q9KU75 Q9KU75 Q9KU75 Q9KSQ9 Q9KPD6 Q9KND9 Q9KND9 Q9KND9 Q9KND9 Q9KKX0 Q9KNF4 Q9KVJ9 Q9KVJ9 Q9KVJ9 Q9KVJ9 Q9KSV6 Q9KL56 Q9KVJ9 Q9KSV6 Q9KSV6 Q9KSV6 Q9KND3 Q9KLQ3 Q9KSV6 Q9KND3 Q9KND3 Q9KND3 Q9KP29 Q9KKS6 Q9KND3 Q9KPA3 Q9KPA3 Q9KPA3 Q9KMX1 Q9KU58...”

YzzH / b3033 DUF1249 domain-containing protein YqiB from Escherichia coli K-12 substr. MG1655 (see paper)
BAA03988.1 ORF2 from Escherichia coli (see paper)
b3033 predicted dehydrogenase from Escherichia coli str. K-12 substr. MG1655
c3779 Hypothetical protein yqiB from Escherichia coli CFT073
Aligns to 21:135 / 140 (82.1%), covers 99.1% of PF06853, 142.1 bits

• The gut microbiota correlate with the disease characteristics and immune status of patients with untreated diffuse large B-cell lymphoma
  Lin, Frontiers in immunology 2023
  • “...proteins were specific to c_Gammaproteobacteria or o_Enterobacteriales , while four including b0354, b1132, b1179, and b3033 were present only in c_Gammaproteobacteria. The functions of these specific proteins may help explain the common physiological or biochemical characteristics of these bacteria and future studies may use the molecular...”
• Identification of in vivo-induced antigens including an RTX family exoprotein required for uropathogenic Escherichia coli virulence
  Vigil, Infection and immunity 2011
  • “...c0445 c1590/3154 c2344 c5347-c5348 c3664 c2954 c2770 c4743 c3779 c3293-c3291 c0446 c5470 c0498 c5419 c2381 c4480 c1511 Function of gene product Respiratory...”

ECA0332 DUF1249 family protein from Pectobacterium atrosepticum SCRI1043
Aligns to 21:135 / 143 (80.4%), covers 99.1% of PF06853, 141.0 bits

• Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum
  Kwenda, BMC genomics 2016
  • “...metR, rpoD16 reg_seq13 aldA 139913 140154 242 136.8 30.4 Independent 1 140046 140063 140078 reg_seq27 ECA0332 380584 380826 243 1660.5 389.3 Independent 1 380610 380631 380646 metJ reg_seq31 ECA0449 515673 515910 238 363.3 528.7 Co-expression 1 515790 515813 515828 glpR, ihf, argR2, nagC, argR2, fnr, fis...”
  • “...spot42 sRNA 28756 28882 127 reg_seq13 3 UTR: aldA 139913 140154 242 reg_seq27 3 UTR: ECA0332 TPP riboswitch 380584 380826 243 reg_seq27b 5 UTR: icc isrH (Hfq binding sRNA) 380825 380917 93 reg_seq31 3 UTR: ECA0449 515673 515910 238 reg_seq34 3 UTR: topB STAXI sRNA 601635...”

STM3184 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 21:135 / 140 (82.1%), covers 99.1% of PF06853, 140.6 bits

• Development and application of MLVA methods as a tool for inter-laboratory surveillance
  Nadon, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2013
  • “...] Chiou [ 18 ] PulseNet US [ 17 ] STM2730 STTR6 2730867 ST19 ST5 STM3184 STTR5 3184543 ST25 ST6 STM3246 STTR9 NA ST26 ST7 STM3629 STTR3 3629542 ST06 ST8 pSLT53 STTR10 NA ST40 STTR10 MLVA: multiple-locus variable-number of tandem-repeats analysis; NA: not applicable; VNTR: variable-number...”

NJ56_08730 DUF1249 family protein from Yersinia ruckeri
Aligns to 22:136 / 141 (81.6%), covers 98.3% of PF06853, 139.7 bits

• Genome Sequence of the Fish Pathogen Yersinia ruckeri SC09 Provides Insights into Niche Adaptation and Pathogenic Mechanism
  Liu, International journal of molecular sciences 2016
  • “...Heat shock protein GrpE NJ56_01800 groES Co-chaperonin GroES (HSP10) NJ56_01805 groEL Chaperonin GroEL (HSP60 family) NJ56_08730 hslJ Heat shock protein HslJ NJ56_16480 hchA Chaperone protein HscA NJ56_16250 yegD Hypothetical chaperone protein NJ56_13065 hslO Molecular chaperone Hsp33 NJ56_03020 dnaK Molecular chaperone DnaK NJ56_03025 dnaJ Molecular chaperone DnaJ...”

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