Family Search for PF06889 (DUF1266)

PF06889 hits 15 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

EC042_RS03510 DUF1266 domain-containing protein from Escherichia coli 042
Aligns to 40:216 / 235 (75.3%), covers 99.4% of PF06889, 161.2 bits

• Overexpression of the third H-NS paralogue H-NS2 compensates fitness loss in hns mutants of the enteroaggregative Escherichia coli strain 042
  Prieto, Scientific reports 2020
  • “...4.7 EC042_RS12255 (GDP-mannose mannosyl hydrolase) 352.9 6.1 EC042_RS12280 (putative colanic acid polymerase WcaD) 332.5 6.6 EC042_RS03510 (DUF1266 domain-containing protein) 308.5 4.0 EC042_RS01730 (putative fimbrial transcriptional regulator MatA) 306.4 22.7 EC042_RS12250 (colanic acid biosynthesis glycosyltransferase WcaI) 294.4 6.8 EC042_RS20240 (MgtC/SapB family protein) 292.1 7.3 EC042_RS01795 (reactive chlorine...”
  • “...cofactor assembly chaperone NarJ) 13.2 2.4 EC042_RS06755 (respiratory nitrate reductase subunit gamma NarI) 12.8 3.1 EC042_RS03510 (DUF1266 domain-containing protein) 8.2 5.0 EC042_RS10415 (DUF1869 domain-containing protein) 6.7 4.9 EC042_RS16380 (EscR/YscR/HrcR family type III secretion system export apparatus protein) 6.3 2.8 EC042_RS22730 (hypothetical protein) 5.4 5.0 EC042_RS19330 (nitrite...”

YbeR / b0645 DUF1266 domain-containing protein YbeR from Escherichia coli K-12 substr. MG1655 (see 2 papers)
P77627 Uncharacterized protein YbeR from Escherichia coli (strain K12)
Aligns to 40:216 / 235 (75.3%), covers 99.4% of PF06889, 156.3 bits

• Isolation and characterization of mini-Tn5Km2 insertion mutants of enterohemorrhagic Escherichia coli O157:H7 deficient in adherence to Caco-2 cells
  Tatsuno, Infection and immunity 2000
  • “...38 P31069 (32) P40877 Q46803 Q46802 AF159462 (34) 7 3 P77627 46 43 P32484 P32135 a Products encoded by the gene with mini-Tn5Km2 are in bold type. The insertion...”

SeKA_A0118 DUF1266 domain-containing protein from Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Aligns to 43:215 / 234 (73.9%), covers 99.4% of PF06889, 154.3 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...Position a nt 198.1 nt 198.2 Substitution b aa 198.1 aa 198.2 aa Position AEX15_00985 SeKA_A0118 putative cytoplasmic protein 112694 A G NS Asn Ser 215 AEX15_01465 SeKA_A0272 ABC transporter ATP-binding protein 259861 G A S Asn Asn 352 AEX15_07125 SeKA_A0450 outer membrane protein F 449431...”

STM0657 putative cytoplasmic protein from Salmonella typhimurium LT2
Aligns to 40:212 / 231 (74.9%), covers 99.4% of PF06889, 153.0 bits

• Comparison of Phenotype and Genotype Virulence and Antimicrobial Factors of Salmonella Typhimurium Isolated from Human Milk
  Pławińska-Czarnak, International journal of molecular sciences 2023
  • “...STM3637 lpfD Protein LpfD Frameshift variant HIGH 720479 TGGGGGAT TGGGGGGAT Insertion tgggggatt TGGGGGGATt 139_140insG Ile47_Asp48fs STM0657 ybeU hypothetical protein Frameshift variant HIGH 757823 G A Nonsyn cag Tag 280C>T Gln94 * STM0695 ybfE Uncharacterized protein YbfE stop_gained HIGH Ref: Salmonella enterica subsp. enterica serovar Typhimurium str....”

YbeU / b0648 DUF1266 domain-containing protein YbeU from Escherichia coli K-12 substr. MG1655
b0648 predicted tRNA ligase from Escherichia coli str. K-12 substr. MG1655
Aligns to 40:216 / 235 (75.3%), covers 99.4% of PF06889, 151.8 bits

• luxS-dependent gene regulation in Escherichia coli K-12 revealed by genomic expression profiling
  Wang, Journal of bacteriology 2005
  • “...b1550 b4196 b0630 b1022 b1437 b4186 b2406 b3939 b3945 b0648 b1680 b0823 b1112 b4288 b4310 b3103 b0621 b1407 b0076 b2723 b3683 b3028 b2968 b0579 b3220 b0260...”

AEX15_00985 DUF1266 domain-containing protein from Salmonella enterica subsp. enterica serovar Kentucky
Aligns to 40:212 / 231 (74.9%), covers 99.4% of PF06889, 151.2 bits

• Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
  Haley, PloS one 2016
  • “...Genome Position a nt 198.1 nt 198.2 Substitution b aa 198.1 aa 198.2 aa Position AEX15_00985 SeKA_A0118 putative cytoplasmic protein 112694 A G NS Asn Ser 215 AEX15_01465 SeKA_A0272 ABC transporter ATP-binding protein 259861 G A S Asn Asn 352 AEX15_07125 SeKA_A0450 outer membrane protein F...”

SEEHRA37_23678 DUF1266 domain-containing protein from Salmonella enterica subsp. enterica serovar Heidelberg str. SARA37
Aligns to 40:216 / 235 (75.3%), covers 99.4% of PF06889, 147.5 bits

• Comparative genomic analysis and virulence differences in closely related salmonella enterica serotype heidelberg isolates from humans, retail meats, and animals
  Hoffmann, Genome biology and evolution 2014
  • “...SEEHRA37_16329 1 Lysine- N -methylase CT G 57 SEEHRA37_07110 1 Hypothetical protein TC L 162 SEEHRA37_23678 1 Hypothetical protein AC KT 227 SEEHRA37_07475 1 Nonannotated TC IV n/a SEEHRA37_contig14 2 Hypothetical protein AG QR 851 SEEHRA37_20355 2 Sensor kinase DpiB AT IF 67 SEEHRA37_10675 2 Notannotated...”

Bd3309 hypothetical protein from Bdellovibrio bacteriovorus HD100
Aligns to 79:255 / 256 (69.1%), covers 99.4% of PF06889, 141.2 bits

• Activity of Bdellovibrio hit locus proteins, Bd0108 and Bd0109, links Type IVa pilus extrusion/retraction status to prey-independent growth signalling
  Capeness, PloS one 2013
  • “...also next to pilus-associated genes: bd1292 is proximal to bd1290 pilA and bd1291 pilG ; bd3309 is near bd3306 pilQ and bd3307 cpaF . The other predicted RHS element bd0328 and bd2719 are not proximal to obvious pilus associated genes. Interestingly, a small region of the...”

SSGG_04898 DUF1266 domain-containing protein from Streptomyces filamentosus NRRL 15998
Aligns to 200:394 / 395 (49.4%), covers 100.0% of PF06889, 126.8 bits

• Transcriptional analysis of the effect of exogenous decanoic acid stress on Streptomyces roseosporus
  Liao, Microbial cell factories 2013
  • “...in the transcripts in genes encoding the member of the ATP synthase complex (SSGG_04986 and SSGG_04898) was observed. ATP synthase is responsible for generation of ATP through oxidative phosphorylation . It uses energy stored in the pH and potential gradients, created by pumping of protons across...”

Pfl01_1884 hypothetical protein from Pseudomonas fluorescens Pf0-1
Aligns to 37:212 / 231 (76.2%), covers 99.4% of PF06889, 113.8 bits

• Occurrence, evolution, and functions of DNA phosphorothioate epigenetics in bacteria
  Tong, Proceedings of the National Academy of Sciences of the United States of America 2018
  • “...FDR 0.001. The use of promoters of Pfl01_0914, Pfl01_1884, Pfl01_3453, Pfl01_5077, and Pfl01_5242 for direct transcription resulted in the transcription of DNA...”

O3K_11150 DUF1266 domain-containing protein from Escherichia coli O104:H4 str. 2011C-3493
Aligns to 167:338 / 346 (49.7%), covers 100.0% of PF06889, 92.9 bits

• Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2
  Ahmed, PloS one 2012
  • “...by IS (O3M_07690) O3K_08905 Putative fimbrial-like adhesinprotein StcD IS interrupted (O3M_08860O3M_08865) IS interrupted (O3O_16775 O3O_16720) O3K_11150 hypothetical protein IS interrupted (O3M_11125) IS interrupted (O3O_14470) O3K_13005 putative sulfatase IS interrupted (O3M_12965) IS interrupted (O3O_12630) O3K_19985 Predicted membrane protein IS interrupted (O3M_19970) IS interrupted (O3O_05310) O3K_20190 hypothetical protein...”

YnjI / b1762 DUF1266 domain-containing protein YnjI from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b1762 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 167:338 / 346 (49.7%), covers 100.0% of PF06889, 91.4 bits

• Whole-genome sequencing analysis of two heat-evolved Escherichia coli strains
  McGuire, BMC genomics 2023
  • “...I ydfJ b1543 putative transporter YdfJ I 411/427 ydjO b1730 protein YdjO I 175/267 ynjI b1762 DUF1266 domain-containing protein YnjI I 310/346 fliZ * b1921 DNA-binding transcriptional regulator FliZ I 12/183 yedP b1955 putative mannosyl-3-phosphoglycerate phosphatase I 105/271 gatA b2094 galactitol-specific PTS enzyme IIA component I...”
• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• Interfering with different steps of protein synthesis explored by transcriptional profiling of Escherichia coli K-12
  Sabina, Journal of bacteriology 2003
  • “...yagU yaiM ilvG b1433 mukF rnc yagR thrA hemN ycjI b1762 molR xseB mhpT b1513 b1322 b1976 b2048 b0072 b4103 b0287 b0355 b3767 b1433 b0922 b2567 b0284 b0002 b3867...”

cg1505 hypothetical protein from Corynebacterium glutamicum ATCC 13032
Aligns to 101:266 / 269 (61.7%), covers 99.4% of PF06889, 84.8 bits

• Discovery of novel amino acid production traits by evolution of synthetic co-cultures
  Zuchowski, Microbial cell factories 2023
  • “...G2712428C cg2850 Cg2850 G30R Cg2850 G30R ARG LEU ++ evo2 DEL 13990261401854 P cg1504 , cg1505, cg1506 deletion of 2829bp upstream of cg1504 b P argT * 2 SNV G1767718A cg1874 Cg1874 G93D Cg1874 G93D ARG LEU ++ evo3 SNV C1399000T cg1504 cg1504*, 3rd codon GAGGAA,...”
  • “...single nucleotide variant (SNV) b Partial deletion of the intergenic region of cg1504-cg1505, deletion of cg1505 & cg1506, partial deletion of cg1507 The mutation MetC/P brnQ * is located within the coding sequence of metC (cg2536), encoding the cystathionine -lyase MetC [ 17 ]. This mutation...”

PMI0608 hypothetical protein from Proteus mirabilis HI4320
Aligns to 94:271 / 317 (56.2%), covers 94.9% of PF06889, 69.7 bits

• Proteus mirabilis and Urinary Tract Infections
  Schaffer, Microbiology spectrum 2015
  • “...FlhD 4 C 2 assembly or DNA binding ( 97 ). WosA The wosA gene (PMI0608, w ild-type o nset with s uperswarming) encodes a predicted membrane protein that induces flhDC expression and hyperswarming when overexpressed ( 99 ). It also causes constitutive swarm cell differentiation...”
  • “...mrpJ d PMI0271 fimbrial operon regulator - - aberr ( 162 , 203 ) wosA PMI0608 regulator of swarming motility ++ ++ const ( 99 ) const, constitutive; cr, crippled; ++, hyperswarm/hypermotility; aberr, aberrant; NR, not reported a elogates on nonswarm agar but not in broth...”
• Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility
  Pearson, Journal of bacteriology 2008
  • “...(PMI0876) (19), rssBA (PMI1696 and PMI1697) (35), wosA (PMI0608) (25), and the rcsBCD regulatory system (PMI1729 to PMI1731) composed of genes encoding the...”

STM2134 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 15:229 / 238 (90.3%), covers 61.7% of PF06889, 68.0 bits

• Salmonella serovar identification using PCR-based detection of gene presence and absence
  Arrach, Journal of clinical microbiology 2008
  • “...STM1867, STM1897, STM1998, STM2005, STM2018, STM2027, STM2134, STM2176, STM2225, STM2237, STM2452, STM2455, STM2456, STM2508, STM2610, STM2618, STM2630,...”
• Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes
  Andrews-Polymenis, Journal of bacteriology 2004
  • “...HA6 HA7 R40 R41 R42 R43 STM2708 STM1453 STM951 STM2134 STM7896 STM951 STM2134 STM514 STM2870 STM747 STM444 STM8260 1994 1996 2000 2000 1996 2000 2000 2001 1991...”

Or search for genetic data about PF06889 in the Fitness Browser