Family Search for PF06932 (DUF1283)

PF06932.11 hits 5 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

STM1503 putative periplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 31:113 / 113 (73.5%), covers 98.8% of PF06932, 142.4 bits

• Quantitative mass spectrometry catalogues Salmonella pathogenicity island-2 effectors and identifies their cognate host binding partners
  Auweter, The Journal of biological chemistry 2011
  • “...14 7 4 2 4 5 STM3159 STM1408 STM1055 STM2585 STM1123 STM1503 STM1720 2 2 1 1 1 1 1 Ratio H/Lb normalized Protein descriptions PEPa SpvD SpvC 50S L21 SopD2 SifA...”

YnfB / b1583 DUF1283 domain-containing protein YnfB from Escherichia coli K-12 substr. MG1655 (see 3 papers)
ynfB / RF|NP_416100 UPF0482 protein ynfB from Escherichia coli K12 (see paper)
b1583 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
P76170 UPF0482 protein YnfB from Escherichia coli (strain K12)
Aligns to 31:113 / 113 (73.5%), covers 98.8% of PF06932, 141.6 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• The superantigen gene ypm is located in an unstable chromosomal locus of Yersinia pseudotuberculosis
  Carnoy, Journal of bacteriology 2002
  • “...AdhR of Pseudomonas stutzeri YdfG of E. coli Hypothetical protein b1583 of E. coli b1592 of E. coli DTBS of E. coli ORF5 ORF6 ORF7 ORF8 ORF9 ORF10 ORF11...”
• The Escherichia coli proteome: past, present, and future prospects
  Han, Microbiology and molecular biology reviews : MMBR 2006
  • “...5.44/49,717.86 5.38/52,838 (5-6) YnfB YniC P76170 P77247 Hypothetical protein Aldehyde-dehydrogenase-like protein Hypothetical protein Protein 8.07/9,977.98...”

KPN_01584 hypothetical protein (RefSeq) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 31:113 / 113 (73.5%), covers 98.8% of PF06932, 141.4 bits

• Identification of antigenic proteins of the nosocomial pathogen Klebsiella pneumoniae
  Hoppe, PloS one 2014
  • “...Cation/multidrug efflux pump 1021 111.5 0.470.13 KPN_01100 [A6T7G2] Histidine triad (HIT) protein 118 13.1 1.310.27 KPN_01584 [A6T8U4] Hypothetical protein 113 12.9 1.900.36 KPN_01784 [A6T9E4] Phosphoglycerate mutase 206 22.8 0.960.21 KPN_02199 [A6TAK6] CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase 891 95.8 2.160.39 KPN_02202 [A6TAK9] Glucose-1-phosphate...”
  • “...conserved nature of this protein renders it unsuitable within a diagnostic approach. Contrastingly, KPN_00466 and KPN_01584, two hypothetical proteins, were selected for future investigations as little is known about the function of these proteins. Their mean Q values were 1.150.22 and 1.900.36 respectively. Moreover, KPN_01584 shows...”

ECs2289 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 31:113 / 113 (73.5%), covers 98.8% of PF06932, 139.8 bits

• Gene expression induced in Escherichia coli O157:H7 upon exposure to model apple juice
  Bergholz, Applied and environmental microbiology 2009
  • “...ECs2200 ECs2265 ECs2278 ECs2279 ECs2280 ECs2281 ECs2283 ECs2289 ECs2292 ECs2303 ECs2392 ECs2449 ECs2505 ECs2506 ECs2536 ECs2544 ECs2558 ECs2581 ECs2614 ECs2622...”

YPTB2194 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 41:124 / 124 (67.7%), covers 98.8% of PF06932, 122.5 bits

• Novel genomic tools for specific and real-time detection of biothreat and frequently encountered foodborne pathogens
  Woubit, Journal of food protection 2012
  • “...has demonstrated no virulence ( Song et al., 2004 ). The genes for YPTS_2284 and YPTB2194 hypothetical proteins were also specific targets for the identification of Y. pseudotuberculosis isolates. These two regions were selected from a set of 67 refined species-specific genes ( Mark Eppinger et...”
• Characterization of chromosomal regions conserved in Yersinia pseudotuberculosis and lost by Yersinia pestis
  Pouillot, Infection and immunity 2008
  • “...the nine genes carried by R3, five (YPTB2193, YPTB2194, YPTB2198, YPTB2199, and YPTB2201) encode hypothetical proteins of unknown function (see Table S4 in the...”

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