PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06945 (DUF1289)

PF06945.13 hits 10 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CC1308 hypothetical protein (NCBI ptt file) from Caulobacter crescentus CB15
Aligns to 13:60 / 74 (64.9%), covers 97.9% of PF06945, 72.7 bits

YdhL / b1648 DUF1289 domain-containing protein YdhL from Escherichia coli K-12 substr. MG1655 (see paper)
b1648 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 12:58 / 79 (59.5%), covers 97.9% of PF06945, 69.6 bits

YPO2376 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 54:100 / 121 (38.8%), covers 97.9% of PF06945, 67.8 bits

STM1438 putative oxidoreductase (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 12:58 / 79 (59.5%), covers 97.9% of PF06945, 66.2 bits

XCV1627 putative NUDIX hydrolase family protein (NCBI) from Xanthomonas campestris pv. vesicatoria str. 85-10
Aligns to 15:61 / 267 (17.6%), covers 89.6% of PF06945, 66.2 bits

PMI1391 hypothetical protein (RefSeq) from Proteus mirabilis HI4320
Aligns to 12:58 / 79 (59.5%), covers 97.9% of PF06945, 65.7 bits

DDB_G0282477 hypothetical protein from Dictyostelium discoideum AX4
Aligns to 30:78 / 88 (55.7%), covers 97.9% of PF06945, 63.4 bits

VCA0426 conserved hypothetical protein (NCBI ptt file) from Vibrio cholerae O1 biovar eltor str. N16961
Aligns to 24:70 / 77 (61.0%), covers 97.9% of PF06945, 62.5 bits

PP5224 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 22:68 / 74 (63.5%), covers 93.8% of PF06945, 58.9 bits

PA1788 hypothetical protein (NCBI) from Pseudomonas aeruginosa PAO1
Aligns to 8:55 / 155 (31.0%), covers 95.8% of PF06945, 56.3 bits

Or search for genetic data about PF06945 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory