PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF06998 (DUF1307)

PF06998 hits 13 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

lmo0207 hypothetical lipoprotein from Listeria monocytogenes EGD-e
Aligns to 28:149 / 153 (79.7%), covers 100.0% of PF06998, 162.2 bits

lin0239 hypothetical lipoprotein from Listeria innocua Clip11262
Aligns to 28:149 / 153 (79.7%), covers 100.0% of PF06998, 156.5 bits

YehR / b2123 DUF1307 domain-containing lipoprotein YehR from Escherichia coli K-12 substr. MG1655 (see 2 papers)
b2123 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 28:150 / 153 (80.4%), covers 100.0% of PF06998, 152.0 bits

STY2386 putative lipoprotein from Salmonella enterica subsp. enterica serovar Typhi str. CT18
t0699 putative lipoprotein from Salmonella enterica subsp. enterica serovar Typhi Ty2
Aligns to 52:173 / 176 (69.3%), covers 100.0% of PF06998, 144.8 bits

STM2156A hypothetical 16.9 kd lipoprotein precursor from Salmonella typhimurium LT2
Aligns to 52:173 / 176 (69.3%), covers 100.0% of PF06998, 144.0 bits

SAUSA300_2403 putative lipoprotein from Staphylococcus aureus subsp. aureus USA300_FPR3757
Aligns to 25:143 / 151 (78.8%), covers 100.0% of PF06998, 134.6 bits

SA2247 hypothetical protein from Staphylococcus aureus subsp. aureus N315
Aligns to 25:143 / 151 (78.8%), covers 100.0% of PF06998, 134.6 bits

SAR2546 putative lipoprotein from Staphylococcus aureus subsp. aureus MRSA252
Aligns to 25:143 / 151 (78.8%), covers 100.0% of PF06998, 134.6 bits

NM219_00920, NM220_00920 YehR family lipoprotein from Parvimonas micra
Aligns to 31:155 / 158 (79.1%), covers 99.2% of PF06998, 114.1 bits

SGO_0004 putative lipoprotein from Streptococcus gordonii str. Challis substr. CH1
Aligns to 30:160 / 172 (76.2%), covers 94.3% of PF06998, 112.8 bits

lmo0255 similar to unknown protein from Listeria monocytogenes EGD-e
Aligns to 37:163 / 167 (76.0%), covers 100.0% of PF06998, 103.2 bits

SSA_0004 Lipoprotein, putative from Streptococcus sanguinis SK36
Aligns to 30:152 / 163 (75.5%), covers 91.1% of PF06998, 87.1 bits

NM219_00915, NM220_00915 YehR family lipoprotein from Parvimonas micra
Aligns to 27:159 / 161 (82.6%), covers 100.0% of PF06998, 63.9 bits

Or search for genetic data about PF06998 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory