Family Search for PF07023 (DUF1315)
PF07023 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
SF1446 hypothetical protein from Shigella flexneri 2a str. 301
Aligns to 4:87 / 90 (93.3%), covers 89.0% of PF07023, 95.8 bits
- Virulence and Stress Responses of Shigella flexneri Regulated by PhoP/PhoQ
Lin, Frontiers in microbiology 2017 - “...homeobox protein ipgB1 2.03 0.0017 ND Chromosome IpgB1, secreted by the Mxi-Spa machinery, function unknown SF1446 2.09 0.0030 ND Chromosome Hypothetical protein SF0572 2.16 0.0447 ND Chromosome Hypothetical protein a WT, wild type; ND, not determined . b The differentially expressed genes of microarrays were defined...”
ECs2486 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 4:87 / 90 (93.3%), covers 89.0% of PF07023, 94.8 bits
c2182 Hypothetical protein yeaC from Escherichia coli CFT073
Aligns to 19:102 / 105 (80.0%), covers 89.0% of PF07023, 94.8 bits
EY04_RS12830 YeaC family protein from Pseudomonas chlororaphis
Aligns to 5:77 / 86 (84.9%), covers 74.4% of PF07023, 92.6 bits
YPO2159 conserved hypothetical protein from Yersinia pestis CO92
YPTB2085 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 4:88 / 90 (94.4%), covers 93.9% of PF07023, 91.5 bits
- An integrated computational-experimental approach reveals Yersinia pestis genes essential across a narrow or a broad range of environmental conditions
Senior, BMC microbiology 2017 - “...protein YPO1102 ypo1102 hypothetical protein YPO1213 nrdB ribonucleotide-diphosphate reductase subunit beta YPO1391 cmk cytidylate kinase YPO2159 ypo2159 hypothetical protein YPO2327 ypo2327 lipoprotein YPO2350 pspB phage shock protein B YPO2883 ndk nucleoside diphosphate kinase YPO2894 iscA iron-sulfur cluster assembly protein YPO2907 glyA serine hydroxymethyltransferase YPO3173 thii thiamine...”
- “...four of these genes identified as essential at 37C but not at 28C (YPO0331, YPO1102, YPO2159 and YPO2327) could not be predicted on the basis of motif or homology matches, although YPO2327 is predicted to be a lipoprotein and is therefore likely to be surface located....”
- Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
Rosso, BMC microbiology 2008 - “...YPO1882 conserved hypothetical protein 1.552 (< 0.001) YPTB1941 YPO1943 putative membrane protein 2.118 (0.004) YPTB2085 YPO2159 conserved hypothetical protein 0.606 (0.032) YPTB2146 YPO2224 putative membrane protein 1.568 (0.018) YPTB2214 YPO2291 putative virulence factoR 0.638 (0.023) YPTB2234 YPO2315 putative exported protein 1.503 (0.008) YPTB2265 YPO2347 putative membrane...”
- Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
Rosso, BMC microbiology 2008 - “...YPTB1902 YPO1882 conserved hypothetical protein 1.552 (< 0.001) YPTB1941 YPO1943 putative membrane protein 2.118 (0.004) YPTB2085 YPO2159 conserved hypothetical protein 0.606 (0.032) YPTB2146 YPO2224 putative membrane protein 1.568 (0.018) YPTB2214 YPO2291 putative virulence factoR 0.638 (0.023) YPTB2234 YPO2315 putative exported protein 1.503 (0.008) YPTB2265 YPO2347 putative...”
YeaC / b1777 DUF1315 domain-containing protein YeaC from Escherichia coli K-12 substr. MG1655 (see paper)
b1777 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 4:87 / 90 (93.3%), covers 89.0% of PF07023, 91.5 bits
STM1292 putative cytoplasmic protein from Salmonella typhimurium LT2
AEX15_08375, SL1344_1227, SeKA_A0714 YeaC family protein from Salmonella enterica subsp. enterica serovar Kentucky
Aligns to 4:88 / 92 (92.4%), covers 90.2% of PF07023, 90.2 bits
- Genetic Determinants of Salmonella Resistance to the Biofilm-Inhibitory Effects of a Synthetic 4-Oxazolidinone Analog
Griewisch, Applied and environmental microbiology 2020 - “...of the major drug efflux pump AcrAB-TolC, and two genes of unknown function (STM0437 and STM1292). The results of this study suggest that JJM-ox-3-70 inhibits biofilm formation by indirect inhibition of extracellular matrix production that may be linked to disruption of flagellar motility. Further work is...”
- Repression of Salmonella enterica phoP expression by small molecules from physiological bile
Antunes, Journal of bacteriology 2012 - “...STM2141 STM0735 STM0738 STM1744 PSLT046 STM2190 STM2799 STM1292 STM0730 STM3321 STM1742 STM3033 STM4274 STM4126 ORF04918 Fold regulation cyoC cyoE dppA phoH...”
- speG Is Required for Intracellular Replication of Salmonella in Various Human Cells and Affects Its Polyamine Metabolism and Global Transcriptomes
Fang, Frontiers in microbiology 2017 - “...hutU SL1344_0767 Urocanate hydratase 1.237 SL1344_3732 SL1344_3732 Hypothetical protein 1.227 SL1344_0790 SL1344_0790 Hypothetical protein 1.163 SL1344_1227 SL1344_1227 Hypothetical protein 1.010 hutH SL1344_0768 Histidine ammonia-lyase 1.002 (B) DOWNREGULATED GENES Flagellar Genes flhA SL1344_1848 Flagellar biosynthetic protein FlhA 1.994 flhB SL1344_1849 Flagellar biosynthetic protein FlhB 1.918 fliP SL1344_1908...”
- Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America
Haley, PloS one 2016 - “...inner membrane metabolite transport protein, sorbitol dehydrogenase, fructose-bisphosphate aldolase, kinase. 9227 SeKA_A0714, SeKA_A0725 C AEX15_08380, AEX15_08375 C 16 putative membrane transport protein, mandelate racemase/muconate lactonizing enzyme, putative transcriptional regulator 3481 SeKA_A3461, SeKA_A3465 AEX15_14060, AEX15_14050 17 peroxisomal (S)-2-hydroxy-acid oxidase, putative glycolate oxidase 1202 SeKA_A1070, SeKA_A1073 AEX15_10030, AEX15_10060...”
- “...AEX15_20690, AEX15_20730 15 oxidoreductase, inner membrane metabolite transport protein, sorbitol dehydrogenase, fructose-bisphosphate aldolase, kinase. 9227 SeKA_A0714, SeKA_A0725 C AEX15_08380, AEX15_08375 C 16 putative membrane transport protein, mandelate racemase/muconate lactonizing enzyme, putative transcriptional regulator 3481 SeKA_A3461, SeKA_A3465 AEX15_14060, AEX15_14050 17 peroxisomal (S)-2-hydroxy-acid oxidase, putative glycolate oxidase 1202...”
- “...in glycolysis and gluconeogenesis, mannitol utilization) (SeKA_A2624, SeKA_A2631), and region 15 (sorbitol dehydrogenase, fructose-bisphosphate aldolase) (SeKA_A0714, SeKA_A0725). The presence of these operons in strains frequently isolated from dairy cows and poultry suggests their roles in these environments should be further investigated. In both STs ten homologous...”
PFLU2679 hypothetical protein from Pseudomonas fluorescens SBW25
Aligns to 5:78 / 86 (86.0%), covers 76.8% of PF07023, 90.1 bits
SO2422 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 5:88 / 93 (90.3%), covers 89.0% of PF07023, 71.6 bits
- Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge
Chourey, BMC genomics 2008 - “...a zinc carboxypeptidase domain protein (SO2424), a hypothetical protein (SO2423), and a conserved hypothetical protein (SO2422) (Figure 2A ). The so2423 ORF overlaps so2422 by 3 bp based on the MR-1 genome annotation ( ). The so2426 region also includes a gene encoding a putative TonB-dependent...”
- “...upstream of so2426 . Putative -independent transcription terminators were identified downstream of the so2427 and so2422 ORFs ( ; [ 28 ]). Figure 2 Structural organization of the S. oneidensis MR-1 so2426 locus . (A) Schematic representation of the so2426 gene region. ORFs located upstream and...”
Or search for genetic data about PF07023 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory