PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07023 (DUF1315)

PF07023.12 hits 9 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SF1446 hypothetical protein (NCBI) from Shigella flexneri 2a str. 301
Aligns to 4:87 / 90 (93.3%), covers 89.0% of PF07023, 99.7 bits

ECs2486 hypothetical protein (NCBI) from Escherichia coli O157:H7 str. Sakai
Aligns to 4:87 / 90 (93.3%), covers 89.0% of PF07023, 98.3 bits

AEX15_08375, SL1344_1227, SeKA_A0714 YeaC family protein from Salmonella enterica subsp. enterica serovar Kentucky
STM1292 putative cytoplasmic protein (NCBI ptt file) from Salmonella typhimurium LT2
Aligns to 4:88 / 92 (92.4%), covers 90.2% of PF07023, 95.8 bits

YeaC / b1777 DUF1315 domain-containing protein YeaC from Escherichia coli K-12 substr. MG1655 (see paper)
b1777 orf, hypothetical protein (VIMSS) from Escherichia coli str. K-12 substr. MG1655
Aligns to 4:87 / 90 (93.3%), covers 89.0% of PF07023, 95.2 bits

YPTB2085 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
YPO2159 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 4:88 / 90 (94.4%), covers 93.9% of PF07023, 94.4 bits

EY04_RS12830 DUF1315 family protein from Pseudomonas chlororaphis
Aligns to 5:77 / 86 (84.9%), covers 74.4% of PF07023, 92.3 bits

Psest_1920 DUF1315 family protein from Pseudomonas stutzeri RCH2
Aligns to 5:82 / 92 (84.8%), covers 75.6% of PF07023, 91.5 bits

PFLU2679 hypothetical protein (RefSeq) from Pseudomonas fluorescens SBW25
Aligns to 5:77 / 86 (84.9%), covers 74.4% of PF07023, 90.5 bits

SO2422 conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1
Aligns to 5:88 / 93 (90.3%), covers 89.0% of PF07023, 78.8 bits

Or search for genetic data about PF07023 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory