Family Search for PF07027 (DUF1318)

PF07027 hits 8 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

SO2062 conserved hypothetical protein from Shewanella oneidensis MR-1
Aligns to 26:116 / 116 (78.4%), covers 98.9% of PF07027, 109.5 bits

• Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1
  Chourey, Applied and environmental microbiology 2006
  • “...E1-E2 family (4) SO1700 Hypothetical protein (9) SO2062 Conserved hypothetical protein (9) SO2247 Hypothetical protein (9) SO2304 Alanine dehydrogenase,...”

YdbL / b1383 DUF1318 domain-containing protein YdbL from Escherichia coli K-12 substr. MG1655
b1383 orf, hypothetical protein from Escherichia coli str. K-12 substr. MG1655
P76076 Uncharacterized protein YdbL from Escherichia coli (strain K12)
Aligns to 17:107 / 108 (84.3%), covers 98.9% of PF07027, 108.9 bits

• 18th Congress of the European Hematology Association, Stockholm, Sweden, June 13–16, 2013
  , Haematologica 2013
• YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of <i>Escherichia coli</i>
  Kumar, Proceedings of the National Academy of Sciences of the United States of America 2024
  • “...to acquire the model structures for YdbH (UniProt P52645), YnbE (UniProt P64448), and YdbL (UniProt P76076) using the https://alphafold.ebi.ac.uk website. With the support of the Unity server at the Ohio State University, AlphaFold-Multimer (5) was used employing the full-length protein sequence of YdbH and mature sequences...”

PMI1184 hypothetical protein from Proteus mirabilis HI4320
Aligns to 19:110 / 110 (83.6%), covers 98.9% of PF07027, 106.4 bits

• Pathogenesis of <i>Proteus mirabilis</i> Infection
  Armbruster, EcoSal Plus 2018 (secret)
• Merging mythology and morphology: the multifaceted lifestyle of Proteus mirabilis
  Armbruster, Nature reviews. Microbiology 2012
  • “...PstC * , PstS * , SufI * , SurA * , PMI0283 * , PMI1184 * , PMI1193 * , PMI3705 * ATFs, ambient-temperature fimbriae; GdhA, glutamate dehydrogenase; HpmA, haemolysin; HmuR2, haemin receptor; Lrp, leucine-responsive regulator; MRK, mannose-resistant Klebsiella -like; MRP, mannose-resistant Proteus -like; ND,...”

S1456 hypothetical protein from Shigella flexneri 2a str. 2457T
Aligns to 18:108 / 109 (83.5%), covers 98.9% of PF07027, 106.1 bits

• Trafficking and function of the cystic fibrosis transmembrane conductance regulator: a complex network of posttranslational modifications
  McClure, American journal of physiology. Lung cellular and molecular physiology 2016
  • “...by these enzymes (87). Residues T717, S1444, and S1456 have also been implicated as targets of phosphorylation, although the responsible kinases have not yet...”

NT01EI_1941 hypothetical protein from Edwardsiella ictaluri 93-146
Aligns to 17:107 / 108 (84.3%), covers 96.7% of PF07027, 97.0 bits

• Transposon mutagenesis and identification of mutated genes in growth-delayed Edwardsiella ictaluri
  Kalindamar, BMC microbiology 2019
  • “...53 Eis048 NT01EI_3148 Hypothetical protein 4.00E-80 20 Eis055 NT01EI_2314 Prophage lambda integrase 8.00E-128 56 Eis059 NT01EI_1941 Hypothetical protein 3.00E-70 8 Eis065 NT01EI_2281 Excinuclease ABC subunit C 3.00E-48 64 Eis068 NT01EI_0448 Polyprenyl synthetase 1.00E-115 37 Eis080 NT01EI_0981 Hypothetical protein 8.00E-129 9 58 Eis086 NT01EI_1237 N-acetylmuramoyl-L-alanine amidase AmiA...”

PA5305 hypothetical protein from Pseudomonas aeruginosa PAO1
Q9HTP9 DUF1318 domain-containing protein from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Aligns to 25:114 / 114 (78.9%), covers 96.7% of PF07027, 93.3 bits

• Proteomic Analysis of Vesicle-Producing Pseudomonas aeruginosa PAO1 Exposed to X-Ray Irradiation
  Zhang, Frontiers in microbiology 2020
  • “...Q9HTX3 PA5217 AfuA 1.659 0.64 2.59 Probable binding protein component of ABC iron transporter Q9HTP9 PA5305 1.581 0.412 3.83 Uncharacterized protein Q9HTN9 PA5315 RpmG 1.86 0.28 6.643 50S ribosomal protein Q9HTM5 PA5330 1.828 0.488 3.75 Uncharacterized protein Q9HTL0 PA5348 HupA 0.869 0.381 2.281 DNA-binding protein HU-alpha...”
• Proteome-wide identification of druggable targets and inhibitors for multidrug-resistant <i>Pseudomonas aeruginosa</i> using an integrative subtractive proteomics and virtual screening approach
  Vemula, Heliyon 2025
• Proteomic Analysis of Vesicle-Producing Pseudomonas aeruginosa PAO1 Exposed to X-Ray Irradiation
  Zhang, Frontiers in microbiology 2020
  • “...protein Q9HTX3 PA5217 AfuA 1.659 0.64 2.59 Probable binding protein component of ABC iron transporter Q9HTP9 PA5305 1.581 0.412 3.83 Uncharacterized protein Q9HTN9 PA5315 RpmG 1.86 0.28 6.643 50S ribosomal protein Q9HTM5 PA5330 1.828 0.488 3.75 Uncharacterized protein Q9HTL0 PA5348 HupA 0.869 0.381 2.281 DNA-binding protein...”

Saro_1314 hypothetical protein from Novosphingobium aromaticivorans DSM 12444
Aligns to 32:123 / 135 (68.1%), covers 98.9% of PF07027, 92.6 bits

• Top-Down Characterization of the Post-Translationally Modified Intact Periplasmic Proteome from the Bacterium Novosphingobium aromaticivorans
  Wu, International journal of proteomics 2013
  • “...cleavage (i.e., none of the peptides captured the mature N-terminus). For example, a hypothetical protein Saro_1314 was confidently identified with a signal peptide removal, a disulfide bond between Cys 99 and Cys 132, and an N-terminal pyroglutamate modification ( Figure 5(a) ). Only five tryptic peptides...”
  • “...at least two unique peptides). Figure 5 Top-down and bottom-up analysis of the hypothetical protein Saro_1314. (a) Fragmentation ion map illustrating high confidence identifications (Q highlighted in green font was modified as pyroglutamic acid, and two C highlighted in red font formed a disulfide bond). (b)...”

CC3552 conserved hypothetical protein from Caulobacter crescentus CB15
Aligns to 27:118 / 118 (78.0%), covers 97.8% of PF07027, 89.9 bits

• Small non-coding RNAs in Caulobacter crescentus
  Landt, Molecular microbiology 2008 (secret)

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