PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07041 (DUF1327)

PF07041.11 hits 6 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

CDCO157_2530 YdfR family protein from Escherichia coli Xuzhou21
Aligns to 1:113 / 114 (99.1%), covers 100.0% of PF07041, 215.5 bits

Z3105 unknown protein encoded within prophage CP-933U (NCBI ptt file) from Escherichia coli O157:H7 EDL933
Aligns to 2:114 / 115 (98.3%), covers 100.0% of PF07041, 209.4 bits

c1434 Hypothetical protein ydfR (NCBI ptt file) from Escherichia coli CFT073
Aligns to 1:113 / 114 (99.1%), covers 99.1% of PF07041, 189.4 bits

c3181 Unknown protein encoded by prophage (NCBI ptt file) from Escherichia coli CFT073
Aligns to 8:120 / 190 (59.5%), covers 99.1% of PF07041, 189.3 bits

YdfR / b1555 Qin prophage; protein YdfR from Escherichia coli K-12 substr. MG1655 (see 3 papers)
ydfR / RF|NP_416073 uncharacterized protein ydfR from Escherichia coli K12 (see paper)
b1555 Qin prophage; predicted protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
EC1303_c16750 YdfR family protein from Escherichia coli 1303
Aligns to 1:93 / 103 (90.3%), covers 88.5% of PF07041, 151.5 bits

S0230 hypothetical bacteriophage protein (NCBI ptt file) from Shigella flexneri 2a str. 2457T
Aligns to 1:103 / 104 (99.0%), covers 76.1% of PF07041, 149.8 bits

Or search for genetic data about PF07041 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory