Family Search for PF07043 (DUF1328)

Running HMMer for PF07043

PF07043 hits 26 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PSYRMG_17725 DUF1328 domain-containing protein from Pseudomonas syringae UMAF0158
Aligns to 6:44 / 54 (72.2%), covers 100.0% of PF07043, 63.6 bits

• Bioinformatics Analysis of the Complete Genome Sequence of the Mango Tree Pathogen Pseudomonas syringae pv. syringae UMAF0158 Reveals Traits Relevant to Virulence and Epiphytic Lifestyle
  Martínez-García, PloS one 2015
  • “...are heavily enriched in hypothetical proteins (103). The other two genes include a membrane protein (PSYRMG_17725) and a flavodoxin (PSYRMG_09680). 10.1371/journal.pone.0136101.g003 Fig 3 Conservation analysis of the Pseudomonas syringae pv. syringae UMAF0158 chromosome. From the outside in, the outermost circle (black) shows the scale line. Circles...”

PFL_0093 conserved hypothetical protein from Pseudomonas fluorescens Pf-5
Aligns to 6:44 / 54 (72.2%), covers 97.4% of PF07043, 61.5 bits

• Engineering Pseudomonas protegens Pf-5 for nitrogen fixation and its application to improve plant growth under nitrogen-deficient conditions
  Setten, PloS one 2013
  • “...( Figure 2 ). Genome walking assays demonstrated that this insertion is within the PFL_0092 PFL_0093 intergenic region ( Figure S3 ). 10.1371/journal.pone.0063666.g001 Figure 1 General scheme of the construction of cosmid X940. Pseudomonas protegens Pf-5 (Pf-5), Pseudomonas stutzeri A1501 (A1501), kanamycin resistance gene (kan), ampicillin...”

PA5482 hypothetical protein from Pseudomonas aeruginosa PAO1
PA14_72370 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 61.0 bits

• A gene network-driven approach to infer novel pathogenicity-associated genes: application to Pseudomonas aeruginosa PAO1
  De, mSystems 2023
  • “...within pathway implicated in biofilm formation and long-term infection ( 106 ), and PA4738 and PA5482, which are involved in protection against osmotic stress ( 107 ). As pathogens encounter various stress factors during infection including osmotic stress that can interfere with cell envelope homeostasis (...”
• A VirB4 ATPase of the mobile accessory genome orchestrates core genome-encoded features of physiology, metabolism, and virulence of Pseudomonas aeruginosa TBCF10839
  Wiehlmann, Frontiers in cellular and infection microbiology 2023
  • “...Hypothetical protein 11.0 PA5401 Hypothetical protein 6.7 PA5446 Hypothetical protein 10.3 PA5460 Hypothetical protein 8.9 PA5482 Hypothetical protein 16.4 *Strains were grown side by side in ABC medium with 40 mM of citrate as a single carbon source up to the late exponential phase (optical density...”
• A non-classical LysR-type transcriptional regulator PA2206 is required for an effective oxidative stress response in Pseudomonas aeruginosa
  Reen, PloS one 2013
  • “...0.44 PA4739 conserved hypothetical protein 0.48 PA5085 probable transcriptional regulator 0.31 PA5481 hypothetical protein 0.39 PA5482 hypothetical protein 0.37 Genes that exhibited a 2-fold or greater alteration in expression in the PA2206 C strain compared to the PA2206 mutant strain (p<0.05) are listed. Positive values indicate...”
• Quorum quenching quandary: resistance to antivirulence compounds
  Maeda, The ISME journal 2012
  • “...PA14_24860 PA14_13390 PA14_10380 PA14_58350 PA4677 PA4738 PA4739 PA5482 PA14_61870 PA14_62680 PA14_62690 PA14_72370 mexB oprM by previous studies lasR rhlR coxB...”
• BqsR/BqsS constitute a two-component system that senses extracellular Fe(II) in Pseudomonas aeruginosa
  Kreamer, Journal of bacteriology 2012
  • “...formation protein iscA PA14_14750 PA14_72370 PA14_30410 PA3812 PA5482 PA2604 2.7 2.3 1.8 2.75E3 1.59E3 2.62E3 Probable iron-binding protein IscA Hypothetical...”
• Quorum-sensing regulation of a copper toxicity system in Pseudomonas aeruginosa
  Thaden, Journal of bacteriology 2010
  • “...2.3 1.0 1.2 1.5 2.2 2.1 opdD pilA betB PA5481 PA5482 1.5 1.0 1.1 1.1 1.1 2.0 2.4 2.1 2.0 2.2 exsE pcoB pcoA Protein description Secreted protein Transcriptional...”
• Effects of antibiotics on quorum sensing in Pseudomonas aeruginosa
  Skindersoe, Antimicrobial agents and chemotherapy 2008
  • “...Relative expression Reg.d Regulation by AZMc pprBb PA5481 PA5482 Gene Gene in P. aeruginosa TABLE 3--Continued ANTIMICROB. AGENTS CHEMOTHER. while CPR and CFT...”
• Early activation of quorum sensing in Pseudomonas aeruginosa reveals the architecture of a complex regulon
  Schuster, BMC genomics 2007
  • “...advanced by 3OC12-HSL-LasR but not C4-HSL-RhlR (Fig. 3D ). However, there were exceptions. PA5481 and PA5482, for example, can be advanced by 3OC12-HSL-LasR but not C4-HSL-RhlR (Fig. 3D ) although in a signal synthesis mutant they responded better to both signals than to 3OC12-HSL alone [...”
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• Biofilm formation of Pseudomonas aeruginosa in spaceflight is minimized on lubricant impregnated surfaces
  Flores, NPJ microgravity 2023
  • “...five DEG at day three correspond to: PA14_40310 (2.6-fold), malQ (3.1-fold) [PA2163], PA14_36650 (3.7-fold) [PA2159], PA14_72370 (5.1-fold) [PA5482] and pchF (3.2-fold). Again, the most differentially (under)expressed gene (PA14_72370) codes for a hypothetical protein. There was no systemic increased expression of extracellular matrix polysaccharides on day three...”
• Quorum quenching quandary: resistance to antivirulence compounds
  Maeda, The ISME journal 2012
  • “...PA14_58350 PA4677 PA4738 PA4739 PA5482 PA14_61870 PA14_62680 PA14_62690 PA14_72370 mexB oprM by previous studies lasR rhlR coxB coxA coIII napA napD napF aprE...”
• BqsR/BqsS constitute a two-component system that senses extracellular Fe(II) in Pseudomonas aeruginosa
  Kreamer, Journal of bacteriology 2012
  • “...3.58E3 Disulfide bond formation protein iscA PA14_14750 PA14_72370 PA14_30410 PA3812 PA5482 PA2604 2.7 2.3 1.8 2.75E3 1.59E3 2.62E3 Probable iron-binding...”

RC1_1636 hypothetical protein from Rhodospirillum centenum SW
Aligns to 6:44 / 54 (72.2%), covers 100.0% of PF07043, 59.8 bits

• Mapping the CgrA regulon of Rhodospirillum centenum reveals a hierarchal network controlling Gram-negative cyst development
  Dong, BMC genomics 2015
  • “...22 RC1_3373 yes ecnAB 145 Single Gene ecnAB; entericidin EcnAB family protein 2.03569 GGTGACCTTCCTGGGG 11 RC1_1636 yes + 79 Single Gene hypothetical protein 1.47009 CGTGCCGCCCGGAAAG 3 RC1_0163 + 415 Single Gene hypothetical protein 1.33965 TTCAAAATACCGCGAA 19 RC1_2985 + 651 Single Gene hypothetical protein 1.5141 CTTGTAGAGCTTCATG 21...”

PP0135 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 6:44 / 53 (73.6%), covers 97.4% of PF07043, 59.5 bits

• UEG Week 2024 Poster Presentations
  , United European gastroenterology journal 2024
• UEG Week 2023 Poster Presentations
  , United European gastroenterology journal 2023

SMc00796 HYPOTHETICAL TRANSMEMBRANE PROTEIN from Sinorhizobium meliloti 1021
Aligns to 6:41 / 54 (66.7%), covers 89.7% of PF07043, 58.3 bits

• Insights into the transcriptomic response of the plant engineering bacterium Ensifer adhaerens OV14 during transformation
  Zuniga-Soto, Scientific reports 2019
  • “...WP_025428892.1 OV14_RS22675 2 50% Down-regulated Down-regulated* (D3-D5) ferritin-like domain-containing protein Capela et al . 33 SMc00796 WP_025426013.1 OV14_RS36805 1 91% Down-regulated Down-regulated* (D2-D7) DUF1328 domain-containing protein Capela et al . 33 SMc00796 WP_025427496.1 OV14_RS36825 1 55% Down-regulated Down-regulated* (D2-D7) DUF1328 domain-containing protein Capela et al ....”
• An extracytoplasmic function sigma factor acts as a general stress response regulator in Sinorhizobium meliloti
  Sauviac, Journal of bacteriology 2007
  • “...smc00048 smc00063 smc00371 smc00506 smc00665 smc00795 smc00796 smc00800 smc00885 smc00931 smc01140 smc01266 smc01267 smc01504 smc01505 smc01506 smc01758...”
  • “...smb21484 smb21673 smb21687 smc00063 smc00371 smc00665 smc00792 smc00796 smc00800 smc00885 smc00921 smc00931 smc01446 smc01504 smc01505 M value (wild type vs....”

XAC0239 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 58.0 bits

• RNA-seq and microarray complement each other in transcriptome profiling
  Kogenaru, BMC genomics 2012
  • “...were predicted to be T3SS secreted while 7 hypothetical proteins, XAC3275, XAC3680, XAC1943, XAC0527, XAC0599, XAC0239, and XAC0755 were predicted to be Type 2 Secretion System (T2SS) substrates (Additional file 1 : Table S6) by Effective database [ 60 ]. Gram-negative bacteria employ T2SS to transport...”

bsl5717 bsl5717 from Bradyrhizobium japonicum USDA 110
Aligns to 8:46 / 57 (68.4%), covers 100.0% of PF07043, 57.2 bits

• Bradyrhizobium diazoefficiens USDA110 PhaR functions for pleiotropic regulation of cellular processes besides PHB accumulation
  Nishihata, BMC microbiology 2018
  • “...protein bll5335 TGCGCCGGACAA 35.29 16.85 2.09 putative thiolase blr5540 TGCGGTGCCCAA 231.26 58.07 3.98 hypothetical protein bsl5717 TGCGGCGCCCAA 109.78 34.94 3.14 hypothetical protein bll5961 TGCGGTGCAACA 12.66 4.23 2.99 transcriptional regulatory protein Crp family blr5962 TGCGGTGCAACA 40.98 7.40 5.54 ABC transporter ATP-binding protein bll6121 TGCAGCGCACAA 21.88 9.39 2.33...”

BAB1_1670 hypothetical protein from Brucella melitensis biovar Abortus 2308
Aligns to 21:59 / 69 (56.5%), covers 100.0% of PF07043, 56.4 bits

• Transposon Sequencing of Brucella abortus Uncovers Essential Genes for Growth In Vitro and Inside Macrophages
  Sternon, Infection and immunity 2018
  • “...BAB2_0442 BAB2_0511 BAB2_0668 BAB1_0471 BAB2_1027 Unknown functions BAB1_0084 BAB1_1670 BAB1_1092 Gene name 2 h p.i. 5 h p.i. 24 h p.i. Predicted function copA...”
• The Brucella abortus virulence regulator, LovhK, is a sensor kinase in the general stress response signalling pathway
  Kim, Molecular microbiology 2014
  • “...2006 ), rpoH1 (bab1_1775) ( Delory et al ., 2006 ), dps (bab1_2150) , and bab1_1670 . Only the rpoH1 ( 32 -family gene) null mutant was defective in oxidative stress survival; its survival phenotype is equivalent to lovhK ( Figure 3C ). Mutants lacking ba14K...”
  • “...24 hours, ba14K and rpoH1 replicate at a rate equivalent to wild-type. Neither dps nor bab1_1670 exhibit defects in intracellular replication ( Figure 3D ). We further assessed one of these mutants, ba14K , in an animal infection model. Deletion of the conserved hypothetical gene ba14K...”

RS02225 PROBABLE TRANSMEMBRANE PROTEIN from Ralstonia solanacearum GMI1000
Aligns to 23:61 / 72 (54.2%), covers 100.0% of PF07043, 56.1 bits

• Comparative and Functional Analyses of Two Sequenced Paenibacillus polymyxa Genomes Provides Insights Into Their Potential Genes Related to Plant Growth-Promoting Features and Biocontrol Mechanisms
  Li, Frontiers in genetics 2020
  • “...C1A50_ RS11755- C1A50_ RS11925 NA NA AOU00_ RS24935- AOU00_ RS25105 Unknown NRPS, transAT-PKS NA FGY93_ RS02225- FGY93_ RS02475 NA C1A50_ RS05530- C1A50_ RS05785 PPSQR21_ RS05515- PPSQR21_ RS05770 NA NA Unknown Bacteriocin NA kinB1 FGY93_ RS02640- FGY93_ RS02695 FQU75_ RS22060- FQU75_ RS22115 C1A50_ RS05290- C1A50_ RS05345 PPSQR21_...”

BMEI0373 Hypothetical Protein from Brucella melitensis 16M
Aligns to 2:40 / 50 (78.0%), covers 100.0% of PF07043, 53.4 bits

• Decreased in vivo virulence and altered gene expression by a Brucella melitensis light-sensing histidine kinase mutant
  Gourley, Pathogens and disease 2015
  • “...BMEI0371 factor rpoE1 3.8 1.00 RNA polymerase sigma-70 BMEI0372 regulator phyR 2.4 1.00 two-component response BMEI0373 - 4.2 1.00 hypothetical protein BMEI0374 kinase phyK 5.9 1.00 Sensory transduction histidine BMEI0280 rpoH2 3.0 1.00 RNA polymerase sigma factor Quorum Sensing BMEII1116 protein vjbR 2.7 1.00 Quorum sensing...”

STM14_5481 DUF1328 domain-containing protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 51.5 bits

• Proteome remodelling by the stress sigma factor RpoS/σ^S in Salmonella: identification of small proteins and evidence for post-transcriptional regulation
  Lago, Scientific reports 2017
  • “...in other bacterial genomes, prompted us to re-annotate the start codon of STM14_2239, STM14_2409, and STM14_5481 (Table 1 , Supplementary Fig. S5 , Supplementary Dataset S1 ). The uncharacterized ORFs ymdF and STM14_1829 are paralogous to yciG (Table 1 , Supplementary Fig. S6 ). YciG 33...”
  • “...IPR009885 78 yjjZ 13, 14 Enterobacteriaceae STM14_5479 Not translated under the conditions used 44 Salmonella STM14_5481 Start codon re-annotated, 98% identity with E . coli YtjA, 2TM fragments, DUF1328 IPR009760 53 ytjA 13, 14 Bacteria and Archaea Paralogous genes e STM14_1275 KGG repeat IPR019626 55 Yes...”
• Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding
  Lévi-Meyrueis, Nucleic acids research 2015
  • “...protein ecnB 3219 114 12 Entericidin B membrane lipoprotein osmY 2396 333 17 Hypothetical protein STM14_5481 419 46 3 Hypothetical protein oat 6006 288 35 Putrescine-2-oxoglutarate aminotransferase ynfM 190 13 220 Putative transport protein a see also Supplementary data set S1. b STM14_1559 or 5non-coding region...”

RL4195 putative transmembrane protein from Rhizobium leguminosarum bv. viciae 3841
Aligns to 19:57 / 70 (55.7%), covers 100.0% of PF07043, 51.0 bits

• Mutation of praR in Rhizobium leguminosarum enhances root biofilms, improving nodulation competitiveness by increased expression of attachment proteins
  Frederix, Molecular microbiology 2014
  • “...Putative autoaggregation protein RL3375 +2.6 0.000292 Conserved hypothetical protein RL2307 +2.6 0.009037 Conserved hypothetical protein RL4195 +2.5 0.004917 Putative transmembrane protein RL1338 +2.5 0.008283 pmtA Putative phosphatidylethanolamine N -methyltransferase RL3959 +2.4 3.71E-05 Conserved hypothetical protein RL4614 +2.4 0.033157 rpoH2 Putative RNA polymerase sigma factor (heat shock)...”

STM4562 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 12:50 / 59 (66.1%), covers 100.0% of PF07043, 51.0 bits

• Contribution of the Cpx envelope stress system to metabolism and virulence regulation in Salmonella enterica serovar Typhimurium
  Subramaniam, PloS one 2019
  • “..., glpT , pfkB , pgtE , ssrB , STM1269 , STM2613 , STM3681 , STM4562 , tatA , ybiJ , yciG ) ( Fig 2C ). These potential novel CpxR target genes were clustered into genes with uncharacterized products ( STM1269 , STM2613 , STM3681...”
• Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale
  Vila, BMC genomics 2019
  • “...) and are only constituted of core variants including an InDel in the intergenic region STM4562- yjjU and SNPs, as well as genes pepE , iroN , priA , ybeK and ilvY (Table 4 ). The dipeptidase E of S. Typhimurium (i.e. missense SNP in pepE...”
• Down-regulation of key virulence factors makes the Salmonella enterica serovar Typhimurium rfaH mutant a promising live-attenuated vaccine candidate
  Nagy, Infection and immunity 2006
  • “...(STM4561) and the possibly cotranscribed adjacent gene (STM4562), which encode a hyperosmotically inducible periplasmic protein and a putative inner membrane...”

Y11_38011 DUF1328 domain-containing protein from Yersinia enterocolitica subsp. palearctica Y11
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 50.7 bits

• RNA-Sequencing Reveals the Progression of Phage-Host Interactions between φR1-37 and Yersinia enterocolitica
  Leskinen, Viruses 2016
  • “...Y11_28711 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor 5.18 Y11_27571 Putative inner membrane protein 3.71 Y11_38011 UPF0391 membrane protein Y11_38011 2.56 Y11_12421 Putative inner membrane protein 2.34 Y11_36571 Membrane protein 2.30 Y11_25791 Integral membrane protein TerC 2.07 Y11_00031 Putative permease PerM (=YfgO) 1.98 Y11_17401 Outer membrane...”

YtjA / b4568 DUF1328 domain-containing protein YtjA from Escherichia coli K-12 substr. MG1655 (see paper)
AAF13_RS19105 DUF1328 domain-containing protein from Escherichia coli O104:H4 str. C227-11
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 50.5 bits

• Broad time-dependent transcriptional activity of metabolic genes of E. coli O104:H4 strain C227/11Φcu in a soil microenvironment at low temperature
  Detert, Environmental microbiology reports 2023
  • “...a 1week 4weeks AAF13_RS15145 YbgSlike family protein n.d.e 5.16 AAF13_RS18930 DUF2502 domaincontaining protein n.d.e 5.36 AAF13_RS19105 DUF1328 domaincontaining protein 2.20 5.39 AAF13_RS19690 Nacetylmannosamine6phosphate 2epimerase 3.03 5.32 AAF13_RS31850 DUF1471 domaincontaining protein n.d.e 6.20 actP Cation/acetate symporter ActP 6.73 2.17 araD Lribulose5phosphate 4epimerase 8.45 2.78 dppF Dipeptide ABC...”

SGRAN_2492 DUF1328 domain-containing protein from Sphingopyxis granuli
Aligns to 6:48 / 57 (75.4%), covers 97.4% of PF07043, 50.1 bits

• Two paralogous EcfG σ factors hierarchically orchestrate the activation of the General Stress Response in Sphingopyxis granuli TFA
  de, Scientific reports 2020
  • “...appear in this regulon (e.g., SGRAN_1221 , SGRAN_1797 , SGRAN_1798 , SGRAN_2253 , SGRAN_2364 , SGRAN_2492 or SGRAN_2662 ) 4 . However, some other elements, such as the sphingosine kinase coding gene ( SGRAN_0919 ) 33 or the putative egtB and egtD genes ( SGRAN_4050 and...”

UTI89_C5146 hypothetical protein from Escherichia coli UTI89
Aligns to 16:54 / 63 (61.9%), covers 100.0% of PF07043, 49.8 bits

• DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli
  Madelung, BMC microbiology 2017
  • “...UTI89_C5139 hypothetical protein 1 1,551006847 UTI89_C5078 hypothetical protein 1 1,539466639 osmY periplasmic protein 1 1,536342614 UTI89_C5146 hypothetical protein (membrane protein) 1 1,529533673 yjjU; yjjV hypothetical protein (phospholipase); deoxyribonuclease YjjV (metal-dependent hydrolase) 2 1,525815587 dnaC DNA replication protein DnaC 1 1,525438036 UTI89_C3195 hypothetical protein 1 1,510078684 yjjM...”
  • “...these proteins were by BLAST found to be putative membrane proteins (Table 5 ). UTI89_C5136, UTI89_C5146 and UTI89_C5068 have four, two and four transmembrane helices respectively. The remaining gene UTI89_C5140 encodes a protein which contains a single transmembrane helix located near the N-terminal. UTI89_C5140 is located...”

KPN_04833 putative amino acid/amine transport protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 27:65 / 74 (52.7%), covers 100.0% of PF07043, 49.3 bits

• Liquid Extraction Surface Analysis Mass Spectrometry of ESKAPE Pathogens
  Havlikova, Journal of the American Society for Mass Spectrometry 2021
  • “...from K. pneumoniae , and UPF0391 membrane protein SAMEA2054040_04753 was assigned to UPF0391 membrane protein KPN_04833, again from K. pneumoniae . The DUF1471 domain-containing protein was identified above by use of a biomarker search within the ProSightPC software, and the misassignment appears to be the result...”

CCNA_00709 hypothetical protein from Caulobacter crescentus NA1000
CC_0673 hypothetical protein from Caulobacter crescentus CB15
Aligns to 6:44 / 60 (65.0%), covers 97.4% of PF07043, 47.8 bits

• Coherent Feedforward Regulation of Gene Expression by Caulobacter σ^T and GsrN during Hyperosmotic Stress
  Tien, Journal of bacteriology 2018
  • “...the promoters of five of these candidates: CCNA_00882, CCNA_00709, CCNA_03889, CCNA_03694, and CCNA_03595 (see Table S1 in the supplemental material). Of these...”
  • “...CCNA_00882 CCNA_03694 CCNA_00028a CCNA_03695a CCNA_03889 CCNA_00709 CCNA_01089 CCNA_02051 CCNA_01653 CCNA_00243 CCNA_03082 CCNA_01100 CCNA_02174a CCNA_02935...”
• Regulatory response to carbon starvation in Caulobacter crescentus
  Britos, PloS one 2011
  • “...P 0.43 No No No CC_0280 Conserved cell surface protein NC 20.99 Yes Yes Yes CC_0673 Hypothetical protein NC 3.59 Yes No Yes CC_0717 Hypothetical membrane associated protein S 2.01 Yes No No CC_1179 hypothetical protein NC 3.14 Yes Yes Yes CC_0163 Conserved hypothetical protein S...”

YPO0432 putative exported protein from Yersinia pestis CO92
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 47.3 bits

• Identification of inducers of the Yersinia enterocolitica phage shock protein system and comparison to the regulation of the RpoE and Cpx extracytoplasmic stress responses
  Maxson, Journal of bacteriology 2004
  • “...XbaI.....................................................GGCTCTAGATAATTCCTAACAGGAAG YPO0432 Up...”
  • “...SacI..................................................CGGGAGCTCATTTTTTTAAACGGGAAG YPO0432 Dwn XbaI...”

NE1120 putative orf; Unknown function from Nitrosomonas europaea ATCC 19718
Aligns to 6:44 / 55 (70.9%), covers 100.0% of PF07043, 43.1 bits

• The divergent AmoC3 subunit of ammonia monooxygenase functions as part of a stress response system in Nitrosomonas europaea
  Berube, Journal of bacteriology 2012
  • “...integrases, transposases, several hypothetical proteins (NE0744, NE1119, NE1120, NE1347, and NE1698), one putative membrane protein (NE1546), and a membrane...”

ACICU_03627 hypothetical protein from Acinetobacter baumannii ACICU
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 42.2 bits

• Transcriptome Remodeling of Acinetobacter baumannii during Infection and Treatment
  Wright, mBio 2017
  • “...) and encompasses several genes identified as differentially expressed at the clade level: ACICU_03220 to ACICU_03627 (see TableS5 ), encoding proteins involved in pilus assembly, amino acid metabolism, and environmental sensing and response proteins. For example, in ACICU_03431 and ACICU_03432, clade D isolates are identical to...”

G8E09_00265 DUF1328 domain-containing protein from Acinetobacter pittii
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 42.0 bits

• Phenotypic Variation and Carbapenem Resistance Potential in OXA-499-Producing Acinetobacter pittii
  Zhang, Frontiers in microbiology 2020
  • “...2.12 0.0000 0.0018 G8E09_11775 Enoyl-CoA hydratase 2.10 0.0006 0.0196 G8E09_08705 Catechol 1,2-dioxygenase 2.10 0.0000 0.0008 G8E09_00265 DUF1328 domain-containing protein 2.08 0.0004 0.0151 G8E09_09085 NAD(P)H-binding protein 2.06 0.0000 0.0000 G8E09_08640 Hypothetical protein 2.02 0.0019 0.0437 G8E09_10100 Thiamine pyrophosphate-dependent dehydrogenaseE1 component subunit alpha 2.02 0.0001 0.0064 G8E09_10095 Alpha-ketoacid...”

ACIAD3602 conserved hypothetical protein ; putative menbrane protein from Acinetobacter sp. ADP1
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 41.6 bits

• Prophage induction and differential RecA and UmuDAb transcriptome regulation in the DNA damage responses of Acinetobacter baumannii and Acinetobacter baylyi
  Hare, PloS one 2014
  • “...rpsO 30S ribosomal protein S15 umuDAb 2.6 ACIAD3325 rpoZ RNA polymerase, omega subunit umuDAb 2.3 ACIAD3602 Conserved hypothetical protein umuDAb 2.3 ACIAD1402 iscA Iron-binding protein umuDAb 2.3 ACIAD3506 aceF Dihydrolipoamide S -acetyltransferase umuDAb 2.2 ACIAD3309 Lipase umuDAb 2.2 ACIAD0316 htpG Heat shock protein; chaperone Hsp90 umuDAb...”

VP0082 putative transmembrane protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 6:51 / 58 (79.3%), covers 97.4% of PF07043, 39.6 bits

• Rapid identification of Vibrio parahaemolyticus by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry
  Hazen, Applied and environmental microbiology 2009
  • “...protein Hypothetical protein 50S ribosomal protein L17 VP0082 VP0275 VP0186 VP2546 VP1210 VP0261 VPA1414 VP0273 VP2098 Transmembrane protein 50S ribosomal...”

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