PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07043 (DUF1328)

Running HMMer for PF07043

PF07043 hits 26 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

PSYRMG_17725 DUF1328 domain-containing protein from Pseudomonas syringae UMAF0158
Aligns to 6:44 / 54 (72.2%), covers 100.0% of PF07043, 63.6 bits

PFL_0093 conserved hypothetical protein from Pseudomonas fluorescens Pf-5
Aligns to 6:44 / 54 (72.2%), covers 97.4% of PF07043, 61.5 bits

PA14_72370 hypothetical protein from Pseudomonas aeruginosa UCBPP-PA14
PA5482 hypothetical protein from Pseudomonas aeruginosa PAO1
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 61.0 bits

RC1_1636 hypothetical protein from Rhodospirillum centenum SW
Aligns to 6:44 / 54 (72.2%), covers 100.0% of PF07043, 59.8 bits

PP0135 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 6:44 / 53 (73.6%), covers 97.4% of PF07043, 59.5 bits

SMc00796 HYPOTHETICAL TRANSMEMBRANE PROTEIN from Sinorhizobium meliloti 1021
Aligns to 6:41 / 54 (66.7%), covers 89.7% of PF07043, 58.3 bits

XAC0239 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 58.0 bits

bsl5717 bsl5717 from Bradyrhizobium japonicum USDA 110
Aligns to 8:46 / 57 (68.4%), covers 100.0% of PF07043, 57.2 bits

BAB1_1670 hypothetical protein from Brucella melitensis biovar Abortus 2308
Aligns to 21:59 / 69 (56.5%), covers 100.0% of PF07043, 56.4 bits

RS02225 PROBABLE TRANSMEMBRANE PROTEIN from Ralstonia solanacearum GMI1000
Aligns to 23:61 / 72 (54.2%), covers 100.0% of PF07043, 56.1 bits

BMEI0373 Hypothetical Protein from Brucella melitensis 16M
Aligns to 2:40 / 50 (78.0%), covers 100.0% of PF07043, 53.4 bits

STM14_5481 DUF1328 family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 51.5 bits

RL4195 putative transmembrane protein from Rhizobium leguminosarum bv. viciae 3841
Aligns to 19:57 / 70 (55.7%), covers 100.0% of PF07043, 51.0 bits

STM4562 putative inner membrane protein from Salmonella typhimurium LT2
Aligns to 12:50 / 59 (66.1%), covers 100.0% of PF07043, 51.0 bits

Y11_38011 DUF1328 domain-containing protein from Yersinia enterocolitica subsp. palearctica Y11
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 50.7 bits

YtjA / b4568 DUF1328 domain-containing protein YtjA from Escherichia coli K-12 substr. MG1655 (see paper)
AAF13_RS19105 DUF1328 family protein from Escherichia coli O104:H4 str. C227-11
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 50.5 bits

SGRAN_2492 DUF1328 domain-containing protein from Sphingopyxis granuli
Aligns to 6:48 / 57 (75.4%), covers 97.4% of PF07043, 50.1 bits

UTI89_C5146 hypothetical protein from Escherichia coli UTI89
Aligns to 16:54 / 63 (61.9%), covers 100.0% of PF07043, 49.8 bits

KPN_04833 putative amino acid/amine transport protein from Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Aligns to 27:65 / 74 (52.7%), covers 100.0% of PF07043, 49.3 bits

CCNA_00709 hypothetical protein from Caulobacter crescentus NA1000
CC_0673 hypothetical protein from Caulobacter crescentus CB15
Aligns to 6:44 / 60 (65.0%), covers 97.4% of PF07043, 47.8 bits

YPO0432 putative exported protein from Yersinia pestis CO92
Aligns to 6:44 / 53 (73.6%), covers 100.0% of PF07043, 47.3 bits

NE1120 putative orf; Unknown function from Nitrosomonas europaea ATCC 19718
Aligns to 6:44 / 55 (70.9%), covers 100.0% of PF07043, 43.1 bits

ACICU_03627 hypothetical protein from Acinetobacter baumannii ACICU
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 42.2 bits

G8E09_00265 DUF1328 domain-containing protein from Acinetobacter pittii
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 42.0 bits

ACIAD3602 conserved hypothetical protein ; putative menbrane protein from Acinetobacter sp. ADP1
Aligns to 6:44 / 52 (75.0%), covers 100.0% of PF07043, 41.6 bits

VP0082 putative transmembrane protein from Vibrio parahaemolyticus RIMD 2210633
Aligns to 6:51 / 58 (79.3%), covers 97.4% of PF07043, 39.6 bits

Or search for genetic data about PF07043 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory