PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07063 (DUF1338)

PF07063.13 hits 27 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BRA0907 hypothetical protein (NCBI) from Brucella suis 1330
Aligns to 11:412 / 466 (86.3%), covers 99.7% of PF07063, 404.6 bits

SEN1428 hypothetical protein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 9:401 / 447 (87.9%), covers 100.0% of PF07063, 404.1 bits

YdcJ / b1423 DUF1338 domain-containing protein YdcJ from Escherichia coli K-12 substr. MG1655 (see paper)
b1423 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 9:401 / 447 (87.9%), covers 100.0% of PF07063, 403.3 bits

BAB2_0328 conserved hypothetical protein (NCBI) from Brucella melitensis biovar Abortus 2308
BruAb2_0326 hypothetical protein (NCBI) from Brucella abortus biovar 1 str. 9-941
Aligns to 11:412 / 466 (86.3%), covers 99.7% of PF07063, 402.9 bits

XAC3851 conserved hypothetical protein (NCBI ptt file) from Xanthomonas axonopodis pv. citri str. 306
Aligns to 11:410 / 455 (87.9%), covers 100.0% of PF07063, 402.7 bits

XCC3793 conserved hypothetical protein (NCBI ptt file) from Xanthomonas campestris pv. campestris str. ATCC 33913
Aligns to 11:410 / 455 (87.9%), covers 100.0% of PF07063, 402.7 bits

SF1787 orf, conserved hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 301
Aligns to 9:401 / 447 (87.9%), covers 100.0% of PF07063, 402.0 bits

SMc04383 putative hydrolase, required for lysine catabolism from Sinorhizobium meliloti 1021
Aligns to 11:412 / 466 (86.3%), covers 99.7% of PF07063, 401.4 bits

ECs2028 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 9:401 / 447 (87.9%), covers 100.0% of PF07063, 400.9 bits

PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) from Pseudomonas putida KT2440
PP_5260 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 11:412 / 464 (86.6%), covers 99.7% of PF07063, 400.4 bits

SAMCFNEI73_Ch3670 VOC family protein from Sinorhizobium americanum
Aligns to 11:412 / 466 (86.3%), covers 99.7% of PF07063, 394.5 bits

AO356_01105 putative hydrolase, required for lysine catabolism from Pseudomonas fluorescens FW300-N2C3
Aligns to 8:409 / 458 (87.8%), covers 99.7% of PF07063, 393.9 bits

YPO1397 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 11:424 / 478 (86.6%), covers 100.0% of PF07063, 387.9 bits

YPTB1422 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 11:427 / 481 (86.7%), covers 100.0% of PF07063, 387.5 bits

Mb3320 CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Aligns to 11:371 / 415 (87.0%), covers 100.0% of PF07063, 345.3 bits

MAV_4264 hypothetical protein (NCBI) from Mycobacterium avium 104
Aligns to 1:357 / 405 (88.1%), covers 98.5% of PF07063, 316.4 bits

AT1G07040 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 74:362 / 371 (77.9%), covers 99.7% of PF07063, 273.2 bits

Q337M4 Os10g0463800 protein from Oryza sativa subsp. japonica
Aligns to 68:355 / 364 (79.1%), covers 99.4% of PF07063, 268.3 bits

G7K9T0 Plant/T7N9-9 protein from Medicago truncatula
Aligns to 1:280 / 289 (96.9%), covers 96.9% of PF07063, 266.4 bits

Z2297 No description from Escherichia coli O157:H7 EDL933
Aligns to 1:207 / 212 (97.6%), covers 61.7% of PF07063, 241.5 bits

AT1G27030 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 18:305 / 310 (92.9%), covers 99.1% of PF07063, 210.7 bits

BCAM0502 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 44:338 / 342 (86.3%), covers 99.7% of PF07063, 205.5 bits

AT1G27020 hypothetical protein (RefSeq) from Arabidopsis thaliana
O04551 Plant/protein from Arabidopsis thaliana
Aligns to 18:305 / 308 (93.5%), covers 99.4% of PF07063, 197.5 bits

MS6_2336 DUF1338 domain-containing protein from Vibrio cholerae MS6
2 alignments in 4:262 / 263 (98.5%), covering up to 43.5% of PF07063, 172.8 bits

FTN_0962 hypothetical protein (NCBI) from Francisella tularensis subsp. novicida U112
Aligns to 2:262 / 264 (98.9%), covers 98.1% of PF07063, 143.3 bits

Z2296 No description from Escherichia coli O157:H7 EDL933
Aligns to 1:128 / 174 (73.6%), covers 17.9% of PF07063, 69.2 bits

Z2298 No description from Escherichia coli O157:H7 EDL933
Aligns to 9:63 / 65 (84.6%), covers 13.3% of PF07063, 35.9 bits

Or search for genetic data about PF07063 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory