PaperBLAST – Find papers about a protein or its homologs

 

Family Search for PF07063 (DUF1338)

PF07063 hits 32 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

BRA0907 hypothetical protein (NCBI) from Brucella suis 1330
Aligns to 197:412 / 466 (46.4%), covers 99.4% of PF07063, 230.2 bits

BAB2_0328 conserved hypothetical protein (NCBI) from Brucella melitensis biovar Abortus 2308
BruAb2_0326 hypothetical protein (NCBI) from Brucella abortus biovar 1 str. 9-941
Aligns to 197:412 / 466 (46.4%), covers 99.4% of PF07063, 230.2 bits

XCC3793 conserved hypothetical protein (NCBI ptt file) from Xanthomonas campestris pv. campestris str. ATCC 33913
Aligns to 197:410 / 455 (47.0%), covers 99.4% of PF07063, 228.1 bits

FOT62_15570 VOC family protein from Serratia marcescens
Aligns to 197:414 / 468 (46.6%), covers 99.4% of PF07063, 227.8 bits

XAC3851 conserved hypothetical protein (NCBI ptt file) from Xanthomonas axonopodis pv. citri str. 306
Aligns to 197:410 / 455 (47.0%), covers 99.4% of PF07063, 227.8 bits

SMc04383 putative hydrolase, required for lysine catabolism from Sinorhizobium meliloti 1021
Aligns to 197:412 / 466 (46.4%), covers 99.4% of PF07063, 227.7 bits

PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) from Pseudomonas putida KT2440
ydcJ / Q88CC1 2-oxoadipate dioxygenase/decarboxylase (EC 1.13.11.93) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
HGLS_PSEPK / Q88CC1 2-oxoadipate dioxygenase/decarboxylase; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
PP_5260 conserved hypothetical protein (NCBI ptt file) from Pseudomonas putida KT2440
Aligns to 197:412 / 464 (46.6%), covers 99.4% of PF07063, 225.8 bits

6w1hA / Q88CC1 Crystal structure of the hydroxyglutarate synthase in complex with 2- oxoadipate from pseudomonas putida (see paper)
Aligns to 195:410 / 450 (48.0%), covers 99.4% of PF07063, 225.6 bits

AO356_01105 putative hydrolase, required for lysine catabolism from Pseudomonas fluorescens FW300-N2C3
Aligns to 194:409 / 458 (47.2%), covers 99.4% of PF07063, 224.0 bits

ECs2028 hypothetical protein (NCBI ptt file) from Escherichia coli O157:H7 str. Sakai
Aligns to 195:401 / 447 (46.3%), covers 99.4% of PF07063, 222.1 bits

SEN1428 hypothetical protein (RefSeq) from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 195:401 / 447 (46.3%), covers 99.4% of PF07063, 221.5 bits

SAMCFNEI73_Ch3670 VOC family protein from Sinorhizobium americanum
Aligns to 197:412 / 466 (46.4%), covers 98.2% of PF07063, 221.4 bits

YdcJ / b1423 DUF1338 domain-containing protein YdcJ from Escherichia coli K-12 substr. MG1655 (see paper)
HGLS_ECOLI / P76097 2-oxoadipate dioxygenase/decarboxylase; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Escherichia coli (strain K12) (see paper)
b1423 hypothetical protein (NCBI) from Escherichia coli str. K-12 substr. MG1655
Aligns to 195:401 / 447 (46.3%), covers 99.4% of PF07063, 221.1 bits

SF1787 orf, conserved hypothetical protein (NCBI ptt file) from Shigella flexneri 2a str. 301
Aligns to 195:401 / 447 (46.3%), covers 99.4% of PF07063, 221.1 bits

YPO1397 conserved hypothetical protein (NCBI ptt file) from Yersinia pestis CO92
Aligns to 197:424 / 478 (47.7%), covers 99.4% of PF07063, 220.7 bits

YPTB1422 hypothetical protein (NCBI) from Yersinia pseudotuberculosis IP 32953
Aligns to 197:427 / 481 (48.0%), covers 99.4% of PF07063, 220.6 bits

2rjbA / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
Aligns to 194:390 / 418 (47.1%), covers 94.7% of PF07063, 202.3 bits

Mb3320 CONSERVED HYPOTHETICAL PROTEIN (NCBI) from Mycobacterium bovis AF2122/97
Aligns to 196:371 / 415 (42.4%), covers 100.0% of PF07063, 197.5 bits

2rjbD / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
Aligns to 177:356 / 372 (48.4%), covers 98.2% of PF07063, 191.7 bits

MAV_4264 hypothetical protein (NCBI) from Mycobacterium avium 104
Aligns to 182:357 / 405 (43.5%), covers 100.0% of PF07063, 191.1 bits

HGLS_ARATH / Q9LMJ7 2-oxoadipate dioxygenase/decarboxylase, chloroplastic; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G07040 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 223:362 / 371 (37.7%), covers 97.0% of PF07063, 113.6 bits

G7K9T0 2-oxoadipate dioxygenase/decarboxylase from Medicago truncatula
Aligns to 141:280 / 289 (48.4%), covers 97.6% of PF07063, 113.2 bits

6w1kA / Q337M4 Crystal structure of the hydroxyglutarate synthase in complex with 2- oxoadipate from oryza sativa (see paper)
Aligns to 167:306 / 312 (44.9%), covers 97.6% of PF07063, 108.4 bits

HGLS_ORYSJ / Q337M4 2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic; 2-hydroxyglutarate synthase; Protein FLOURY ENDOSPERM 7; EC 1.13.11.93 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
Aligns to 216:355 / 364 (38.5%), covers 97.6% of PF07063, 107.8 bits

F2DXZ9 2-oxoadipate dioxygenase/decarboxylase from Hordeum vulgare subsp. vulgare
Aligns to 213:352 / 361 (38.8%), covers 98.2% of PF07063, 103.1 bits

Z2296 No description from Escherichia coli O157:H7 EDL933
Aligns to 2:128 / 174 (73.0%), covers 47.9% of PF07063, 101.4 bits

BCAM0502 hypothetical protein (RefSeq) from Burkholderia cenocepacia J2315
Aligns to 211:338 / 342 (37.4%), covers 89.9% of PF07063, 100.0 bits

AT1G27030 hypothetical protein (RefSeq) from Arabidopsis thaliana
Aligns to 166:305 / 310 (45.2%), covers 98.2% of PF07063, 92.6 bits

MS6_2336 DUF1338 domain-containing protein from Vibrio cholerae MS6
Aligns to 135:247 / 263 (43.0%), covers 62.1% of PF07063, 84.8 bits

AT1G27020 hypothetical protein (RefSeq) from Arabidopsis thaliana
O04551 2-oxoadipate dioxygenase/decarboxylase from Arabidopsis thaliana
Aligns to 166:305 / 308 (45.5%), covers 88.2% of PF07063, 78.4 bits

Z2297 No description from Escherichia coli O157:H7 EDL933
Aligns to 140:207 / 212 (32.1%), covers 36.1% of PF07063, 75.7 bits

FTN_0962 hypothetical protein (NCBI) from Francisella tularensis subsp. novicida U112
Aligns to 135:244 / 264 (41.7%), covers 61.5% of PF07063, 71.3 bits

Or search for genetic data about PF07063 in the Fitness Browser

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory