Family Search for PF07063 (HGLS)
PF07063 hits 33 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.
SMc04383 putative hydrolase, required for lysine catabolism from Sinorhizobium meliloti 1021
Aligns to 16:411 / 466 (85.0%), covers 100.0% of PF07063, 555.7 bits
- mutant phenotype: PFam PF07063.9 (DUF1338). This gene is specifically important for utilizing lysine, and this phenotype is conserved. It might be the decarboxylating 2-oxoadipate hydrolase of the D-lysine oxidase pathway, which has not been linked to a gene, or the crotonyl-CoA hydratase in the glutaryl-CoA degradation pathway.
XAC3851 conserved hypothetical protein from Xanthomonas axonopodis pv. citri str. 306
Aligns to 16:409 / 455 (86.6%), covers 100.0% of PF07063, 550.8 bits
- Comparative proteomic analysis of Xanthomonas citri ssp. citri periplasmic proteins reveals changes in cellular envelope metabolism during in vitro pathogenicity induction
Artier, Molecular plant pathology 2018 (secret) - Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection
Moreira, BMC microbiology 2017 - “...protease; XAC0193, a phosphohistidine phosphatase; XAC0381, a ketosteroid isomerase; XAC3140, a periplasmic TolA-binding protein; and XAC3851, an uncharacterized mettaloenzyme (YdcJ). All of them were up-regulated in infectious conditions. Thus, only seven proteins remained in the group of hypothetical proteins up-regulated in infectious conditions: XAC1093, 1364, 2246,...”
XCC3793 conserved hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913
Aligns to 16:409 / 455 (86.6%), covers 100.0% of PF07063, 550.6 bits
BRA0907 hypothetical protein from Brucella suis 1330
Aligns to 16:411 / 466 (85.0%), covers 100.0% of PF07063, 549.2 bits
- Molecular targets for rapid identification of Brucella spp
Ratushna, BMC microbiology 2006 - “...731323 .. 732192 BruAb2_0483 (484959 .. 485828) 870 sugar ABC transporter, permease protein, putative 2 BRA0907 888804 .. 890204 BruAb2_0326 (326911 .. 328311) 1401 conserved hypothetical protein 2 BRA1096 1082617 .. 1083330 BruAb2_1035 1037839 .. 1038552 714 transcriptional regulator, putative 2 BRA0553 (532630 .. 534594) BMEII0717...”
- Completion of the genome sequence of Brucella abortus and comparison to the highly similar genomes of Brucella melitensis and Brucella suis
Halling, Journal of bacteriology 2005 - “...174 107 764 105 194 339 240 528 969 7,738 BRA0749-0750 BRA0907 BMEII0466 II II II 581 699 108 a S, B. suis; M, B. melitensis; A, B. abortus. Cell division...”
- The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts
Paulsen, Proceedings of the National Academy of Sciences of the United States of America 2002 - “...BR0391 BR0355 BR0389, BR0390 BR0221 BRA0631-BRA0635 BRA0749, BRA0750 BRA0907 BRA1080 BRA1096 Unique B. melitensis regions 107 764 276 238 845 105 194 339 240...”
BruAb2_0326 hypothetical protein from Brucella abortus biovar 1 str. 9-941
BAB2_0328 conserved hypothetical protein from Brucella melitensis biovar Abortus 2308
Aligns to 16:411 / 466 (85.0%), covers 100.0% of PF07063, 547.4 bits
- Molecular targets for rapid identification of Brucella spp
Ratushna, BMC microbiology 2006 - “...(484959 .. 485828) 870 sugar ABC transporter, permease protein, putative 2 BRA0907 888804 .. 890204 BruAb2_0326 (326911 .. 328311) 1401 conserved hypothetical protein 2 BRA1096 1082617 .. 1083330 BruAb2_1035 1037839 .. 1038552 714 transcriptional regulator, putative 2 BRA0553 (532630 .. 534594) BMEII0717 755374 .. 757398 1965/2025...”
- Identification of VceA and VceC, two members of the VjbR regulon that are translocated into macrophages by the Brucella type IV secretion system
de, Molecular microbiology 2008 - “...box-containing upstream regions of several uncharacterized genes were found to be activated by VjbR, including BAB2_0328, BAB1_1881, BAB1_1066, BAB1_1837, BAB1_1994, BR0951 (ORF BR0951 is not annotated in B. abortus ), BAB1_1652, BRA1111, BAB1_1058, BAB2_0403 and BAB1_0604. BAB2_0880 was predicted in our first generation screen to contain...”
6w1hA / Q88CC1 Crystal structure of the hydroxyglutarate synthase in complex with 2- oxoadipate from pseudomonas putida (see paper)
Aligns to 14:409 / 450 (88.0%), covers 100.0% of PF07063, 547.2 bits
- Ligand: 2-oxoadipic acid (6w1hA)
PP_5260 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) from Pseudomonas putida KT2440
ydcJ / Q88CC1 2-oxoadipate dioxygenase/decarboxylase (EC 1.13.11.93) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
HGLS_PSEPK / Q88CC1 2-oxoadipate dioxygenase/decarboxylase; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see 2 papers)
PP_5260 conserved hypothetical protein from Pseudomonas putida KT2440
Aligns to 16:411 / 464 (85.3%), covers 100.0% of PF07063, 547.1 bits
- mutant phenotype: Specifically important in carbon source L-Lysine; carbon source D-Lysine. This is part of the pathway from D-lysine to 2-oxoglutarate. For biochemical evidence that this enzyme forms 2-hydroxyglutarate, see https://doi.org/10.1101/450254
- function: Catalyzes the decarboxylation and hydroxylation of 2- oxoadipate (2OA) to form D-2-hydroxyglutarate (D-2-HGA) (PubMed:31064836, PubMed:32523014). Is specific for 2-oxoadipate (PubMed:32523014). Is involved in a D-lysine catabolic pathway (PubMed:31064836).
catalytic activity: 2-oxoadipate + O2 = (R)-2-hydroxyglutarate + CO2 (RHEA:71787)
cofactor: Fe(2+)
disruption phenotype: Deletion mutant is unable to grow on either isomer of lysine. - Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism
Thompson, mBio 2019 - “...We describe a route of 2-oxoadipate (2OA) catabolism, which utilizes DUF1338-containing protein P. putida 5260 (PP_5260) in bacteria. Despite its prevalence in many domains of life, DUF1338-containing proteins have had no known biochemical function. We demonstrate that PP_5260 is a metalloenzyme which catalyzes an unusual route...”
- “...(2KG), connecting d -lysine to the TCA cycle. One of these enzymes, P. putida 5260 (PP_5260), contains a DUF1338 domain, representing a family with no previously described biological function. Our work also identified the recently described coenzyme A (CoA)-independent route of l -lysine degradation that results...”
- Massively parallel fitness profiling reveals multiple novel enzymes inPseudomonas putidalysine metabolism
Thompson, 2018 - A Broad Spectrum Racemase in Pseudomonas putida KT2440 Plays a Key Role in Amino Acid Catabolism
Radkov, Frontiers in microbiology 2018 - “...conversion PP_5258 Part of d -Lys catabolism 1795.84 201.07 1,594.77 9 0.02 Cytoplasmic Function unknown PP_5260 CDD: domain of unknown function DUF 1338 245.25 30.65 214.60 8 0.01 Cytoplasmic Amino acid transport and metabolism PP_5257 Part of d -Lys catabolism 516.49 85.62 430.87 6 0.01 Cytoplasmic...”
- Differential proteomics and physiology of Pseudomonas putida KT2440 under filament-inducing conditions
Crabbé, BMC microbiology 2012 - “...biosynthesis protein PP_5232 gi|26991908 0.48 Hypothetical protein PP_5232 PP_5258 gi|26991934 0.27* Aldehyde dehydrogenase family protein PP_5260 gi|26991936 0.24* Hypothetical protein PP_5260 * P-value < 0.05. Role of RecA in P. putida KT2440 filamentation and stress resistance The increased abundance of RecA (PP_1629, 2.35-fold) in 50 rpm...”
FOT62_15570 VOC family protein from Serratia marcescens
Aligns to 16:413 / 468 (85.0%), covers 100.0% of PF07063, 546.3 bits
- Microbial Reduction of Fumonisin B1 by the New Isolate Serratia marcescens 329-2
Keawmanee, Toxins 2021 - “...hchA 3.62 A0A2V4G7I4 Amino acid ABC transporter substrate-binding protein glnH 3.62 A0A5C7CH16 VOC family protein FOT62_15570 3.58 A0A0G8B4P9 Peptidyl-prolyl cis-trans isomerase fkpA 3.58 A0A656VU86 Long-chain fatty acid transport protein AB868_00683 3.55 A0A2S4 857 Histidine ABC transporter substrate-binding protein HisJ hisJ 3.47 A0A656V5R8 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase metE 3.46...”
SAMCFNEI73_Ch3670 VOC family protein from Sinorhizobium americanum
Aligns to 16:411 / 466 (85.0%), covers 100.0% of PF07063, 542.0 bits
AO356_01105 putative hydrolase, required for lysine catabolism from Pseudomonas fluorescens FW300-N2C3
Aligns to 13:408 / 458 (86.5%), covers 100.0% of PF07063, 539.9 bits
- mutant phenotype: PFam PF07063.9 (DUF1338). This gene is specifically important for utilizing lysine, and this phenotype is conserved. It might be the decarboxylating 2-oxoadipate hydrolase of the D-lysine oxidase pathway, which has not been linked to a gene, or the crotonyl-CoA hydratase in the glutaryl-CoA degradation pathway.
SEN1428 hypothetical protein from Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Aligns to 14:400 / 447 (86.6%), covers 100.0% of PF07063, 539.0 bits
YdcJ / b1423 DUF1338 domain-containing protein YdcJ from Escherichia coli K-12 substr. MG1655 (see paper)
HGLS_ECOLI / P76097 2-oxoadipate dioxygenase/decarboxylase; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Escherichia coli (strain K12) (see paper)
b1423 hypothetical protein from Escherichia coli str. K-12 substr. MG1655
Aligns to 14:400 / 447 (86.6%), covers 100.0% of PF07063, 538.6 bits
SF1787 orf, conserved hypothetical protein from Shigella flexneri 2a str. 301
Aligns to 14:400 / 447 (86.6%), covers 100.0% of PF07063, 536.9 bits
ECs2028 hypothetical protein from Escherichia coli O157:H7 str. Sakai
Aligns to 14:400 / 447 (86.6%), covers 100.0% of PF07063, 536.5 bits
YPO1397 conserved hypothetical protein from Yersinia pestis CO92
Aligns to 16:423 / 478 (85.4%), covers 100.0% of PF07063, 527.8 bits
- Whole genome multilocus sequence typing as an epidemiologic tool for Yersinia pestis
Kingry, Diagnostic microbiology and infectious disease 2016 - “...amount of diversity with 4 different alleles observed among the 4 groups of linked isolates. YPO1397 had 3 allele calls among the 4 groups of linked isolates; all other ORFs had only 2 allele calls. Among the mutation types, VNTRs showed the most sequence diversity between...”
- “...2012 YPO1386 ansB L-asparaginase II 1564799 C/T SNP, Non-syn A/V 2 Gibbons et al., 2012 YPO1397 YPO1397 Hypothetical protein 1580108 Gain/Loss VNTR 1/3 YPO1491 ybiT ABC transporter ATB-binding protein 1692374 A/T SNP, Non-syn D/V 1 YPO1638 mnmA tRNA-specific 2-thiouridylase 1864049 A/G SNP, Syn 2 (4452 only)...”
- Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression
Rosso, BMC microbiology 2008 - “...YPTB1387 YPO1361 putative membrane protein 1.593 (0.003) YPTB1389 YPO1363 putative virulence factoR 0.632 (0.043) YPTB1422 YPO1397 conserved hypothetical protein (pseudogene. inframe deletion) 1.803 (0.012) YPTB1432 YPO1408 putative exported protein 0.671 (0.044) YPTB1499 YPO1483 hypothetical protein 1.491 (0.029) YPTB1504 YPO1487 conserved hypothetical protein 2.062 (0.005) YPTB1571 YPO1560...”
- A surface-focused biotinylation procedure identifies the Yersinia pestis catalase KatY as a membrane-associated but non-surface-located protein
Myers-Morales, Applied and environmental microbiology 2007 - “...Caf1M (YPMT1.82) Hypothetical (YPO0524) Hypothetical (YPO1397) CAC92551 CAC92156 CAB53170 CAC91199 CAC91178 CAC89968 CAC90263 CAB55264 CAC89382 CAC90226...”
- “...the periplasmic component of an ABC transport system. YPO1397 encodes a conserved hypothetical protein of unknown function. Loosely bound proteins that had been...”
YPTB1422 hypothetical protein from Yersinia pseudotuberculosis IP 32953
Aligns to 16:426 / 481 (85.4%), covers 100.0% of PF07063, 526.7 bits
2rjbA / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
Aligns to 13:387 / 418 (89.7%), covers 98.4% of PF07063, 510.5 bits
2rjbD / A0A0H2UZX2 Crystal structure of uncharacterized protein ydcj (sf1787) from shigella flexneri which includes domain duf1338. Northeast structural genomics consortium target sfr276
Aligns to 10:354 / 372 (92.7%), covers 99.5% of PF07063, 456.2 bits
Mb3320 CONSERVED HYPOTHETICAL PROTEIN from Mycobacterium bovis AF2122/97
Aligns to 16:370 / 415 (85.5%), covers 100.0% of PF07063, 409.9 bits
MAV_4264 hypothetical protein from Mycobacterium avium 104
Aligns to 2:356 / 405 (87.7%), covers 100.0% of PF07063, 382.3 bits
- Mycobacterium avium Subsp. hominissuis Interactions with Macrophage Killing Mechanisms
Abukhalid, Pathogens (Basel, Switzerland) 2021 - “...these genes were attenuated in the early stages of infection in mice [ 51 ]. MAV_4264, which has high homology with the bacterial regulatory protein TetR domain, was shown to regulate the inhibition of acidification by other genes (MAV_2450, MAV_4292 and MAV_4012) ( Table 1 )...”
- “...] MAV_2043 Cu-Zn-SOD Catalysis, superoxide dismutase Resistance to oxidative stress phagosome acidification. [ 58 ] MAV_4264 Hypothetical protein Unknown function, homology with bacterial regulatory protein TetR Resistance to both oxidative stress and phagosome acidification. [ 59 ] MAV_4644 ADP-ribosyltransferase Interfering with host cathepsin Z protein Resistance...”
- Genetic Involvement of Mycobacterium avium Complex in the Regulation and Manipulation of Innate Immune Functions of Host Cells
Shin, International journal of molecular sciences 2021 - “...Association with susceptibility to oxidative products Inhibition of phagosome acidification MAH 104 [ 85 ] MAV_4264 - Hypothetical protein, homology with bacterial regulatory protein TetR domain -* Regulation of the genes that participate in the inhibition of phagosome acidification (ex, MAV_2450, MAV_4292, MAV_4012) Inhibition of phagosome...”
- “...these genes were attenuated in the early stages of infection in mice [ 85 ]. MAV_4264, which has high homology with the bacterial regulatory protein TetR domain, was shown to regulate the inhibition of acidification by other genes (MAV_2450, MAV_4292, and MAV_4012) [ 85 ]. Thus,...”
- Identification of virulence determinants of Mycobacterium avium that impact on the ability to resist host killing mechanisms
Li, Journal of medical microbiology 2010 - “...MAV_4292 and MAV_4012) were associated with susceptibility to oxidative products. Mutants MAV_2450, MAV_4292, MAV_0385 and MAV_4264 live in macrophage vacuoles with acidic pH (below 6.9). Mutants MAV_4292, MAV_0385 and MAV_4264 were susceptible to nitric oxide in vitro . The study of individual mutants can potentially lead...”
- “...homologous to MAV_4292 and MAV_4012, lead to increased susceptibility to SOD and NO (MAV_4012 and MAV_4264), raising interesting questions about the mechanisms of bacterial resistance to these toxic products of phagocytic cells. Production of superoxide anion is ineffective as a mechanism of killing of the majority...”
Z2297 No description from Escherichia coli O157:H7 EDL933
Aligns to 1:207 / 212 (97.6%), covers 51.8% of PF07063, 296.3 bits
HGLS_ARATH / Q9LMJ7 2-oxoadipate dioxygenase/decarboxylase, chloroplastic; 2-hydroxyglutarate synthase; EC 1.13.11.93 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
AT1G07040 hypothetical protein from Arabidopsis thaliana
Aligns to 79:336 / 371 (69.5%), covers 73.3% of PF07063, 162.9 bits
- function: Catalyzes the decarboxylation and hydroxylation of 2- oxoadipate (2OA) to form D-2-hydroxyglutarate (D-2-HGA) (PubMed:32523014). Is involved in a D-lysine catabolic pathway (PubMed:32523014).
catalytic activity: 2-oxoadipate + O2 = (R)-2-hydroxyglutarate + CO2 (RHEA:71787)
cofactor: Fe(2+)
disruption phenotype: Delayed germination, compromised development, cholortic phenotype with impaired growth, due to lysine accumulation. - An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism
Thompson, Nature communications 2020 - “...predicted N-terminal localization peptide. As expected, the E. coli homolog YdcJ and the plant homologs AT1G07040 and FLO7 catalyzed the conversion of 2OA to that was confirmed by in vitro assays analyzed using high resolution LC-MS (Supplementary Fig. 5a ). In addition, the FLO7 homolog displayed...”
- “...not correlated with 2KGD expression; rather, their transcription is highly correlated with a DUF1338 protein AT1G07040 (Supplementary Table 2 ). In addition, in O. sativa , mutants of the DUF1338 protein FLO7 display a floury starch phenotype that resembles the maize opaque2 phenotype which is known...”
- Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach
Shaar-Moshe, BMC plant biology 2015 - “...family protein 43), loc_os11g03730 (AT3G10740, ASD1), loc_os06g22080 (AT3G51520, diacylglycerol acyltransferase family), loc_os06g49990 (AT3G51130) Unclassified loc_os10g32680 (AT1G07040), loc_os11g37560 (AT3G55760), loc_os01g46600 (PM41), loc_os03g51350, loc_os01g40280 (AT5G35460), loc_os09g20930, loc_os03g45280 (dehydrin), loc_os04g34610 (AT1G43245), loc_os03g48380 (AT1G27150), loc_os08g33640 (AT1G23110), loc_os01g58114 (AT4G27020), loc_os05g33820 (AT1G10740), loc_os02g48630 (AT5G48020), loc_os05g48230 (AT4G13400), loc_os09g04100 (AT4G31830), loc_os01g26920 (AT2G39080) loc_os02g38240 (AT4G24750),...”
- Mining the bitter melon (momordica charantia l.) seed transcriptome by 454 analysis of non-normalized and normalized cDNA populations for conjugated fatty acid metabolism-related genes
Yang, BMC plant biology 2010 - “...0 0 gi|17402469 167 1 At4g14960 TUA6 (tubulin alpha-6 chiain) 46 2 gi|157350920 162 1 At1g07040 similar to unknown protein 12 2 gi|118481513 152 1 At2g36620 RPL24A 0 0 gi|157352507 142 1 At1g61580 ARP2/RPL3B 40 1 gi|157327297 156 2 At1g18540 60 S ribosomal protein L6 (RPL6A)...”
G7K9T0 2-oxoadipate dioxygenase/decarboxylase from Medicago truncatula
Aligns to 1:259 / 289 (89.6%), covers 72.8% of PF07063, 158.6 bits
6w1kA / Q337M4 Crystal structure of the hydroxyglutarate synthase in complex with 2- oxoadipate from oryza sativa (see paper)
Aligns to 24:279 / 312 (82.1%), covers 73.6% of PF07063, 156.9 bits
- Ligand: 2-oxoadipic acid (6w1kA)
HGLS_ORYSJ / Q337M4 2-oxoadipate dioxygenase/decarboxylase, chloroplastic/amyloplastic; 2-hydroxyglutarate synthase; Protein FLOURY ENDOSPERM 7; EC 1.13.11.93 from Oryza sativa subsp. japonica (Rice) (see 2 papers)
Aligns to 73:332 / 364 (71.4%), covers 73.6% of PF07063, 155.7 bits
- function: Catalyzes the decarboxylation and hydroxylation of 2- oxoadipate (2OA) to form D-2-hydroxyglutarate (D-2-HGA) (PubMed:32523014). Is involved in a D-lysine catabolic pathway (PubMed:32523014). Involved in the regulation of starch synthesis and amyloplast development within the peripheral endosperm during the grain-filling stage (PubMed:26608643).
catalytic activity: 2-oxoadipate + O2 = (R)-2-hydroxyglutarate + CO2 (RHEA:71787)
cofactor: Fe(2+)
disruption phenotype: Reduced grain filling rate, reduced grain weight, reduced seed thickness, opaque periphery of grain endosperm and defect in starch accumulation in the periphery of the endosperm during seed development, due to lysine accumulation. - iTRAQ-based proteome profile analysis of superior and inferior Spikelets at early grain filling stage in japonica Rice
You, BMC plant biology 2017 - “...Os06g0214300 protein 2.850.43 1.680.16 ns 156 Os04g0404400 Q7X6I8 OJ000315_02.8 protein 16.737.88 5.111.18 ns 168 Os10g0463800 Q337M4 Os10g0463800 protein 3.600.15 2.590.29 ns Accession: the code of the identified protein in RAP database ( http://rapdb.dna.affrc.go.jp /); [a] and [b]: the code of these two identified proteins in RAP...”
F2DXZ9 2-oxoadipate dioxygenase/decarboxylase from Hordeum vulgare subsp. vulgare
Aligns to 70:333 / 361 (73.1%), covers 76.9% of PF07063, 150.7 bits
Z2296 No description from Escherichia coli O157:H7 EDL933
Aligns to 1:127 / 174 (73.0%), covers 31.6% of PF07063, 137.8 bits
MS6_2336 DUF1338 domain-containing protein from Vibrio cholerae MS6
2 alignments in 11:246 / 263 (89.7%), covering up to 27.2% of PF07063, 113.2 bits
AT1G27030 hypothetical protein from Arabidopsis thaliana
Aligns to 23:280 / 310 (83.2%), covers 73.3% of PF07063, 100.8 bits
FTN_0962 hypothetical protein from Francisella tularensis subsp. novicida U112
Aligns to 5:244 / 264 (90.9%), covers 62.2% of PF07063, 96.9 bits
AT1G27020 hypothetical protein from Arabidopsis thaliana
O04551 2-oxoadipate dioxygenase/decarboxylase from Arabidopsis thaliana
2 alignments in 23:278 / 308 (83.1%), covering up to 33.9% of PF07063, 92.4 bits
- Transcriptomic Analysis Revealed Key Defense Genes and Signaling Pathways Mediated by the Arabidopsis thaliana Gene SAD2 in Response to Infection with Pseudomonas syringae pv. Tomato DC3000
Li, International journal of molecular sciences 2023 - “...highly expressed in OESAD2/Col-0 at 2 dpi, and nine DEGs ( AT3G41979 , AT4G13410 , AT1G27020 , AT4G01390 , AT1G61110 , AT2G04040 , AT1G10586 , AT4G28940 , and AT4G16730 ) were highly expressed in OESAD2/Col-0 at 3 dpi. Another 19 DEGs displayed the second expression pattern,...”
- Transcriptome Analysis of Four Arabidopsis thaliana Mediator Tail Mutants Reveals Overlapping and Unique Functions in Gene Regulation
Dolan, G3 (Bethesda, Md.) 2018 - “...Protein of unknown function (DUF1195) 1.31 1.12 1.77 AT1G21100 O-methyltransferase family protein 1.14 1.21 1.63 AT1G27020 unknown protein 1.56 1.25 1.16 AT1G51820 Leucine-rich repeat protein kinase family protein 1.32 2.05 1.44 AT1G69880 THIOREDOXIN H-TYPE 8 ( TH8 ) 3.24 1.49 3.30 AT1G73330 DROUGHT-REPRESSED 4 ( DR4...”
- BLISTER Regulates Polycomb-Target Genes, Represses Stress-Regulated Genes and Promotes Stress Responses in Arabidopsis thaliana
Kleinmanns, Frontiers in plant science 2017 - “...* 16 AT5G64510 Tunicamycin-induced 1 (TIN1) 7.04 No 17 AT1G21528 Unknown protein 6.87 No 18 AT1G27020 Unknown protein 6.64 Yes 19 AT3G28899 Unknown protein 6.43 No 20 AT5G41761 Unknown protein 6.26 Yes 21 AT5G26270 Unknown protein 6.14 No 22 AT1G42990 basic region/leucine zipper motif 60 (bZIP60)...”
- Spatial dissection of the Arabidopsis thaliana transcriptional response to downy mildew using Fluorescence Activated Cell Sorting
Coker, Frontiers in plant science 2015 - “...AT1G02850 BGLU11 AT3G49210 AT1G06770 DRIP1 AT3G09940 ATMDAR3, AT1G14880 PCR1 AT3G49620 DIN11 AT1G25390 AT3G11340 AT1G35710 AT3G53600 AT1G27020 AT3G14225 GLIP4 AT1G49050 AT4G11890 AT1G30730 AT3G22600 AT1G73805 AT4G12480 pEARLI 1 AT1G35260 MLP165 AT3G25655 IDL1 AT1G74710 EDS16, ATICS1 AT4G12500 AT1G44130 AT3G60120 BGLU27 AT2G25510 AT4G20000 AT1G51800 AT4G11890 AT2G27660 AT4G21850 MSRB9 AT1G53470 MSL4...”
- The Arabidopsis KH-Domain RNA-Binding Protein ESR1 Functions in Components of Jasmonate Signalling, Unlinking Growth Restraint and Resistance to Stress
Thatcher, PloS one 2015 - “...P450, family 71, subfamily A, polypeptide 16 AT4G12470 AZI1 2.2 1.8E-13 azelaic acid induced 1 AT1G27020 2.4 1.9E-13 Unknown AT2G14610 PR1 2.3 2.2E-13 pathogenesis-related gene 1 AT5G20790 2.8 1.2E-12 Unknown AT3G02040 SRG3 2.1 1.2E-12 senescence-related gene 3 AT4G22470 3.7 1.7E-12 protease inhibitor/seed storage/lipid transfer protein (LTP)...”
- Microgravity induces changes in microsome-associated proteins of Arabidopsis seedlings grown on board the international space station
Mazars, PloS one 2014 - “...(Subtilisin-like serine protease 2) Q9STL8 AT3G48380 1.9345 Probable Ufm1-specific protease (UfSP) (EC 3.4.22.-) Unknown O04551 AT1G27020 2.1419 Putative uncharacterized protein At1g27020 (T7N9.8) (Uncharacterized protein) O04616 AT4G01150 2.3716 Uncharacterized protein At4g01150, chloroplastic O23601 1.8203 Putative uncharacterized protein AT4g17600 (Putative uncharacterized protein dl4835w) Q8H0W8 1.9158 Putative uncharacterized protein...”
- ERF5 and ERF6 play redundant roles as positive regulators of JA/Et-mediated defense against Botrytis cinerea in Arabidopsis
Moffat, PloS one 2012 - “...ABC transporter family protein - - 3.7 <0.001 At1g21245 Wall-associated kinase-related - - 3.1 0.009 At1g27020 Unknown protein - - 3.0 <0.001 At1g49960 Xanthine/uracil permease family protein - - 2.0 0.008 At1g53940 GDSL-motif lipase 2 (GLIP2) - - 2.5 0.009 At2g18980 Peroxidase - - 3.8 <0.001...”
- Microgravity induces changes in microsome-associated proteins of Arabidopsis seedlings grown on board the international space station
Mazars, PloS one 2014 - “...proteinase) (Subtilisin-like serine protease 2) Q9STL8 AT3G48380 1.9345 Probable Ufm1-specific protease (UfSP) (EC 3.4.22.-) Unknown O04551 AT1G27020 2.1419 Putative uncharacterized protein At1g27020 (T7N9.8) (Uncharacterized protein) O04616 AT4G01150 2.3716 Uncharacterized protein At4g01150, chloroplastic O23601 1.8203 Putative uncharacterized protein AT4g17600 (Putative uncharacterized protein dl4835w) Q8H0W8 1.9158 Putative uncharacterized...”
BCAM0502 hypothetical protein from Burkholderia cenocepacia J2315
Aligns to 31:337 / 342 (89.8%), covers 66.3% of PF07063, 78.6 bits
Z2298 No description from Escherichia coli O157:H7 EDL933
Aligns to 14:63 / 65 (76.9%), covers 10.4% of PF07063, 39.6 bits
Or search for genetic data about PF07063 in the Fitness Browser
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory