Family Search for PF07098 (DUF1360)

PF07098 hits 4 sequences in PaperBLAST's database above the trusted cutoff. Showing all hits. Or show only hits to curated sequences or try another family.

YJCA_BACSU / O31623 Sporulation protein YjcA from Bacillus subtilis (strain 168) (see paper)
BSU11790 sporulation-specific protein from Bacillus subtilis subsp. subtilis str. 168
Aligns to 10:112 / 118 (87.3%), covers 99.0% of PF07098, 125.7 bits

• function: Involved in sporulation.
• Secondary structural entropy in RNA switch (Riboswitch) identification
  Manzourolajdad, BMC bioinformatics 2015
  • “...nt 1251377 1251576 forward BSU11730 cotO -1930 -35.49 - 0.3200 127.4260025 - 0.4800 702 yjcA BSU11790 0.8401102424 200 nt 3640353 3640552 forward BSU35210 yvkA -19956 -52.60 - 0.3600 121.8539963 - 0.4250 6302 yvyE BSU35510 0.8399478197 200 nt 3686112 3686311 forward BSU35770 tagC -1247 -51.99 - 0.3750...”
  • “...nt 1251277 1251476 forward BSU11730 cotO -1830 -37.50 - 0.3650 127.1539993 - 0.5150 802 yjcA BSU11790 0.8088676929 200 nt 1405212 1405411 forward BSU13390 ykoT -621 -56.26 - 0.4050 120.9140015 - 0.3500 4602 ykoX BSU13430 0.8086636066 200 nt 3268455 3268654 forward BSU31810 yuzE -4132 -52.90 - 0.3900...”
• The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis
  Eichenberger, PLoS biology 2004
  • “...yhjL (BSU10550), yisZ (BSU10910), yitA (BSU10920), yitB (BSU10930), yitC (BSU10940), yitD (BSU10950), yitE (BSU10960), yjcA (BSU11790), yjcM (BSU11910), yjcN (BSU11920), yjcO (BSU11930), yjmC (BSU12320), yjmD (BSU12330), yjmF (BSU12350), yknT (BSU14250), yknU (BSU14320), yknV (BSU14330), ykuD (BSU14040), ykvI (BSU13710), ykvU (BSU13830), ylbJ (BSU15030), ylbO/gerR (BSU15090), yngE (BSU18210),...”

BAS1142 conserved hypothetical protein from Bacillus anthracis str. Sterne
Aligns to 11:113 / 119 (86.6%), covers 99.0% of PF07098, 125.3 bits

• ExsY, CotY, and CotE Effects on Bacillus anthracis Outer Spore Layer Architecture
  Durand-Heredia, Journal of bacteriology 2022 (secret)
• Localization of the CotY and ExsY proteins to the exosporium basal layer of Bacillus anthracis
  Durand-Heredia, MicrobiologyOpen 2022
  • “...promoter is the downstream one. The upstream putative element, which overlaps the start of the bas1142 ORF, has a poor match at the 35 element (Figure 8 ). The start site of transcription for the exsY gene of Bacillusthuringiensis has been mapped to the G nucleotide...”
  • “...or C; and W is A or T. The start codon of the divergently transcribed bas1142 determinant, which lies within the putative upstream exsY promoter element is underlined. The exsY ribosome binding site is underlined and the start codon is indicated in bold font. (b) Brightfield,...”

AKJ10_09485 DUF1360 domain-containing protein from Bacillus velezensis
Aligns to 11:108 / 126 (77.8%), covers 99.0% of PF07098, 109.4 bits

• Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an "Operational Group B. amyloliquefaciens" within the B. subtilis Species Complex
  Fan, Frontiers in microbiology 2017
  • “...786 RS16685 786 AKJ10_09380 Fengycin BGC0001095 yngL RBAM_018410 432 ssp168_2005 393 bAMF_1937 381 RS16575 381 AKJ10_09485 381 fenE RBAM_018420 3804 ssp168_2006 3840 bAMF_1938 3807 RS16570 3804 AKJ10_09490 3804 fenD RBAM_018430 10776 ssp168_2007 10812 bAMF_1939 7677 RS16565 10776 AKJ10_09495 4431 fenC RBAM_018440 7650 ssp168_2008 7668 RS16560 4584...”

RBAM_018410 YngL from Bacillus amyloliquefaciens FZB42
Aligns to 28:125 / 143 (68.5%), covers 99.0% of PF07098, 108.8 bits

• Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis Form an "Operational Group B. amyloliquefaciens" within the B. subtilis Species Complex
  Fan, Frontiers in microbiology 2017
  • “...AKJ10_09375 1203 yxjF RBAM_018200 786 ssp168_4194 786 bAMF_1916 786 RS16685 786 AKJ10_09380 Fengycin BGC0001095 yngL RBAM_018410 432 ssp168_2005 393 bAMF_1937 381 RS16575 381 AKJ10_09485 381 fenE RBAM_018420 3804 ssp168_2006 3840 bAMF_1938 3807 RS16570 3804 AKJ10_09490 3804 fenD RBAM_018430 10776 ssp168_2007 10812 bAMF_1939 7677 RS16565 10776 AKJ10_09495...”

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